Array 1 144754-147302 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAP01000002.1 Porphyromonas sp. COT-108 OH2963 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 144754 37 100.0 35 ..................................... TTTTCATAGCTTTTATGTTTTATTCTTGTTAATGA 144826 37 100.0 40 ..................................... GTAAAAAAACCCTCTAGTTCGTATAATTTTTTCAAATACT 144903 37 100.0 39 ..................................... CCGTTTTGAGGTTCCCCTTCAAAGGCTCAGAGAGCTGTT 144979 37 100.0 38 ..................................... TTAAAAGGTCGGACCCAGCTTGAACCTGGGTTGTATCT 145054 37 100.0 42 ..................................... GAATTTATAACCACTGTTGGCAGTAGCTGTAACCGTCACTTG 145133 37 100.0 38 ..................................... TGTTTGGGGAAAGCCTTCTGAGAGTGGCTCTCGGTTCC 145208 37 100.0 38 ..................................... AGAAAAGTCCTTAAAGAGACGAGATTGTAATATGCCAT 145283 37 100.0 41 ..................................... GCTGCTTTGCTCAAGATATCCTCTCTCCTGTTGTTCATCTA 145361 37 100.0 34 ..................................... CTTTTTCCGTACCACCAAATCGCTTTAAATTTTT 145432 37 100.0 39 ..................................... GATTTCACCCTCTTTTTTGCCTGTAATGGTCAGGGTTGC 145508 37 100.0 34 ..................................... GGAAATATAACGATCATAGTATGTGTTACTATAA 145579 37 100.0 38 ..................................... ACATTTTTTCATTGCCTCCTGCTTGCCAAGAGATGATG 145654 37 100.0 34 ..................................... TGTAATAGAGAATCTGTACTTTGAGCAAATCCGT 145725 37 100.0 36 ..................................... GAATCCTCCTGTGATTGTATTTTCTACCTCAAAGGC 145798 37 100.0 36 ..................................... TTCAGGGACTGGAGTTGGGTTTATAGATACCTTCAG 145871 37 100.0 34 ..................................... GGATAGGGAAGAGGGCTTCCCTTCTTGGATTGTC 145942 37 100.0 36 ..................................... TTTTTGGGGTTGTTAGTTTTAGTTTGAAGTTGACCG 146015 37 100.0 36 ..................................... GAATGCCCTCTTCTCCGCCTTGGTTTCTCAGGCTTA 146088 37 100.0 36 ..................................... GAGAATGTTATTCTCATTCTCTTCATCCATCCTACA 146161 37 100.0 36 ..................................... CTCTAGTTACTAGATAGACTTCAAACTCACTGAACA 146234 37 100.0 36 ..................................... TCTTGGTTGATCAAAAATTCTCCTTGATGTATTGGA 146307 37 100.0 34 ..................................... GTCAATTCGCTCGGTGTGAGCGATGACAAGCTGA 146378 37 100.0 40 ..................................... GAAAGACCCCTTCCCGTTTGGGATTAAGCAGAGAGTTCAA 146455 37 100.0 35 ..................................... GAATTTTTCTTTTTTCTCTTTGTAGACTTTCAAGT 146527 37 100.0 38 ..................................... GCTATATTTGTAAGTTTTTTGATAAGAGGAACATTGTA 146602 37 100.0 38 ..................................... GATGATGGGGTATGGTGTGCCTCTCTTCGGATTGTCCT 146677 37 100.0 39 ..................................... ACTATTCTATTTAATTTTTCAGGACTGCCTGCTCCTTCG 146753 37 100.0 37 ..................................... TAATAATGCCGAGTATCAAAATTTTTATTTTTGTTTT 146827 37 97.3 37 .............................C....... ATTTGGGTAAATCCCCTCTCCGATTCCTTCAAAAAAG 146901 37 100.0 36 ..................................... AAAAAGAAAGGAATATAATCATTATCACAACGATGC 146974 37 100.0 36 ..................................... ACTTCGGACTCCATTCCTACCATCAACCATATTTCG 147047 37 100.0 36 ..................................... CCTAATTCGGGGACTGGAGTTGGTCTTATAGATACC 147120 37 100.0 35 ..................................... TTTTTTATAGGGATCGGCTCCGCTTTCGCAGAGCC 147192 37 100.0 37 ..................................... TCTTTTGTCTCTCTATAATCTTTGAAGATGTAGGTGA 147266 37 81.1 0 ...........C.........T....C....TT.C.T | ========== ====== ====== ====== ===================================== ========================================== ================== 35 37 99.4 37 GTATCTATACATATTCAGTCAGTAAGACTATCAAGAC # Left flank : TCACACCGTATCGGGTAACGGACAGATCGTAGCAGAGCAAGGGGATTCCCTTAAAGAGATGTCGGTTTCTTCTTTCCGAGAACGGAGAAGAAGCCCTCACTCCTTTGCTCCTGTTGTTATAGAGGAAGAGGGTTCTGCTATCGGCATAAGCAGGGATACTATACTGATTCGCAAGGATAACCGGATAGTGAGAGAGCTGCCGGCTCCGAAAGTAAGGGAGATCTCTATAGAGGCAGAAGGTGTTACTCTAAGCGGTAACATGATAAAGTACTGCTCCAAGAACAATATCCTCATTCTTCGGAACGGAGAGCCTTTACTTCTTGAATAGGAATTTTAGATAGCCGGCGGGATATCTTTGTCAATCAAGAAAGTATAATCTTTCTATGAGATATATTGACGACACATGCGCAGTTATATATCGGTATTTTCGAAATTATTTTGCTTGTTTATAATCAGAGAGTTGCGAATTTACTTTTTTGTATATCGTTGATAATCAAATT # Right flank : TCAGATTGATAAGTAAGAAAGTTGAGATAAAAGGGTTCAGAAGAATGATTGAAAGGGGATAAAAGATGGGGTGAACGTGTAAAGAGAGGGAGATGAGGGCTTGAATGAGAGAAAGCAAGGCTTGAATGGTACAGATCGCGGTTTGATTTTTAGAAATCAAGCCGCGATTTCTTTTTCTAAATCTGTTCAATCAAAGATTTAGACGTGATCAGAGAAAGTTTTTAAGCCGTATATCGTGTTTTGGGAAAGGGGAGAGGGACAGGTAGATGGCAGTCTGTTGGTAAAGATATGAGGGATTGGAGAGAGAGGAGTGCATTTTGATTTTTGCTTCCGGAAGTCGGTTTTTAGTCGTATTTTTGTAGTAGAATCAAAAAAACAGAGAGAAAGATGCAAAAACCATCCATACCCAAAGGAACAAGGGACTTTCTTCCTCACGAAATGGAGCGGAGAAACTATATATTCGAGACCATAAAGAGCGTGTTTCACAGCTTCGGCTTCCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTATACATATTCAGTCAGTAAGACTATCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 777-362 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAP01000014.1 Porphyromonas sp. COT-108 OH2963 contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================== ================== 776 37 100.0 26 ..................................... CATCGTTGGGCTGCTACTCTAACAGT 713 37 97.3 26 .............................G....... AAACGTTGTCCTGCGAGTCTAACAAG 650 37 94.6 26 .............................T..C.... CTTATTTGGACTGCGAAAAGAACTCC 587 37 97.3 26 ....................................G AACATTTGTCCTGCAGCCATAACTCC 524 37 100.0 26 ..................................... GAACGTTGTCCTGCTCCCATAACAAG 461 37 86.5 26 T.............................AAG...G AACAGTTGGAGTGCTACTCTAACAGG 398 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================== ================== 7 37 96.5 26 CTCACCTCGCTGGATGTGAGCAAGAACACCGCTTTGA # Left flank : TGACACAATTCTTTTGCTCGAAGAACCCGAATCTAAGCTCCCTGAAGATCTCGAGCAGCATAAATGATGAGTTGTGGATCAACCACTGCAAGCTGAGTGCGGAGACGCTGAACGAGATATTCCGAACACTTCCCGATGTAAAAGGGCTGACCGAAGGCGAGAGAAAGATAGCCGCTATCCAAGGTAATCCGGGCACGGCAGCGTGCAACAAGAAGATAGCCACAGACAAAGGCTGGGAATTGGATGTCGAAGATACTCCTCCGCCTGCCGGCAACAGCATGACGATGACGACAACGAAAGCCGTCGGCGAGAAGATAAAGATTTTGATCAATGCCGAGCCGGCAGACCGTCCGAATGTCTGGATAGACCTGAACAACAACAAGGTCAAAGATGCAGGCGAGAGCGTGACCAGCTTTAACTTCAATAAAGAGTACAAGCTCGGCTCTCAGACCATTACGGTGTATGGAAAGGTAACCGCGTTGGGCTGCTACTATGGCAGT # Right flank : AGACGATTCTCCTGTGAGGGTAACCGGAGTCTAAGCTCCTTGAAGATCTCAAGCAGCATAAATGATAAGTTGTGGGTCCGCTACTGTAAGCTGAGTGCGGAGACACTGAATACCATATTCCGCACGCTTCCCGATGTAAAAGGGCAGACCGAAGGCGAGAAGAAGATCTGGATAGCAGACAATCCGGGTACGGATGCGTGCAACAAGAAGATAGCCGAAGACAAAGGGTGGACGGTTAATATTGATTATGATTGAGGGGAATTTCCCTCACCCCGAAGTGGCGGGGCGTAAAATATTGTAGACAAATTCGGGCAGTGCCGGTGCGATAAGTGCCGGCACTGCTTTTTTTGTGCCGAGACGGA # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.24, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACCTCGCTGGATGTGAGCAAGAACACCGCTTTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 1506-1283 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAP01000014.1 Porphyromonas sp. COT-108 OH2963 contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================= ================== 1505 34 100.0 29 .................................. AGGCTTTGGTACGGATGTTCTGCACCGAT 1442 34 100.0 29 .................................. CCGCTTTGGTAGTGTTGGGCTGCGCCTCT 1379 34 94.1 29 .....C..........................T. TAGCTTTGAAAGTGTTGTCCTGCGGCTCT 1316 34 97.1 0 .....C............................ | ========== ====== ====== ====== ================================== ============================= ================== 4 34 97.8 29 AACTCTCTCACCTCGCTGGATGTGAGCAAGAACA # Left flank : TAGCTTTGACACAATTCTCCTGCGAAAAGAACCCGAATCTAAGCTCCTTGAAGATCTCGAGCAGCATAAAGGACGAGTTATGGATCAGAAAGTGTAAGCTGAGCGCGGAGACACTGAACGAGATATTCCGCACGCTTCCCGATGTAAAAGGGCAGACAGAAGGGAAGAAAGAGCTATATATCAAAGGTAATCCGGGTACGGCAGCGTGCAACAAGAAGATAGCCAAGGACAAAGGCTGGAAATTGGATGTCGAAGATACTCCTCCTCCGCCTGCCGGCAACAGCATGACGATGACGACAACGAAAGCCGTCGGCGAGAAGATAATGCTTAAGATCTATGCCAAACCGGCAGACCGTCCGAATGTCTGGATAGACCTGAACAACAACAAGGTCAAAGATGCAGGCGAGAGCGTAACCGTATTTGGCTCCTATCAAGAGTACACACTCGGTGCACAGACCGTTACGGTGTATGGAAAGGTAACCGGGTTCGACTGCGAAGAG # Right flank : CTGCTTTGACACAATTCTTTTGCTCGAAGAACCCGAATCTAAGCTCCCTGAAGATCTCGAGCAGCATAAATGATGAGTTGTGGATCAACCACTGCAAGCTGAGTGCGGAGACGCTGAACGAGATATTCCGAACACTTCCCGATGTAAAAGGGCTGACCGAAGGCGAGAGAAAGATAGCCGCTATCCAAGGTAATCCGGGCACGGCAGCGTGCAACAAGAAGATAGCCACAGACAAAGGCTGGGAATTGGATGTCGAAGATACTCCTCCGCCTGCCGGCAACAGCATGACGATGACGACAACGAAAGCCGTCGGCGAGAAGATAAAGATTTTGATCAATGCCGAGCCGGCAGACCGTCCGAATGTCTGGATAGACCTGAACAACAACAAGGTCAAAGATGCAGGCGAGAGCGTGACCAGCTTTAACTTCAATAAAGAGTACAAGCTCGGCTCTCAGACCATTACGGTGTATGGAAAGGTAACCGCGTTGGGCTGCTACTAT # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACTCTCTCACCTCGCTGGATGTGAGCAAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 27710-39931 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAP01000009.1 Porphyromonas sp. COT-108 OH2963 contig_9, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 27710 30 100.0 37 .............................. ATAGAAACGGAGTCCGTTCTTTGTCAGCAGATTTACA 27777 30 100.0 37 .............................. GCGATTGGCTATCAGTTTCTTCAAGATGAGGCTAATG 27844 30 100.0 36 .............................. AAGGATGATTATACTGATTTTGCAAATGAAACATTC 27910 30 100.0 37 .............................. TTGGTTGGATGTTGTTCCAGGCGACAAAATTAGGTGT 27977 30 100.0 36 .............................. GACTATAAAGATGTTTTTGAGCCTAAAGATTTCAAG 28043 30 100.0 36 .............................. CTTGGTAATCAAGCTGGAAAGAGTTTATCTGTAATC 28109 30 100.0 36 .............................. AATGCAGAAGGGTTTGTTAACATTGACCTATCTCTT 28175 30 100.0 36 .............................. CTTACGCTTAGAGACGATGAAGTGCGTCTCACAACG 28241 30 100.0 36 .............................. GCTTGTTGATGGTATCAGACTCCGCACTGCTGGGGT 28307 30 100.0 36 .............................. ATTATATTGATAGAGTGTAAACACTGGAAGCAAGAT 28373 30 100.0 37 .............................. TACTCATGACATAGAAAATACTTGAGTTCTCCATATC 28440 30 100.0 36 .............................. TGCTGTAACGTTACGAGAGTCTTCGACGGCAGTGCG 28506 30 100.0 37 .............................. GGAGAATAACAGGCAAAGAGTGGAGAGAGCTTAAGGC 28573 30 100.0 36 .............................. GTGTCCTCGTTGCGATCTCCGGATCCGTCCTTGGTG 28639 30 100.0 35 .............................. GAGAAAGAAGAACTTCCGGTTCATGAGCAGGATAC 28704 30 100.0 36 .............................. CTTCACGTTGCGCCCCAGCTCCTGCACCCTCTTAGC 28770 30 100.0 36 .............................. AAACGATGGGCGACGGCGCGGATTCGGTTCTCGAAC 28836 30 100.0 37 .............................. AGAATGCTTTCTGATACGAGTTTTGATGCTTCGTTCA 28903 30 100.0 36 .............................. TGAGTACACAGCGGAATGGATTCCTCAAATATCTAA 28969 30 100.0 36 .............................. ATGGGAAGAACGATAACCGGAGAGCTTATTAGTGAA 29035 30 100.0 36 .............................. AGTCTATCATACCGCTTGAGTCGGTTGCCGGCTATT 29101 30 100.0 35 .............................. CGGCTAAGGACGCAACGCTTAAGGCGTTTGACAAC 29166 30 100.0 36 .............................. ATCCGACAACGAGCGGTATCACGTTCATGCGAGGAG 29232 30 100.0 36 .............................. GACATACACAAATACAAAACAAGAGAGGAGAGCTGA 29298 30 100.0 36 .............................. AATATATATGTGCAATATTCTCTACAACTTGTTTGT 29364 30 100.0 36 .............................. GACATACTCCATATGATAACCATCATGTTCACTTTT 29430 30 100.0 36 .............................. GGTTCAAGATATGTTGATAAGTTTAATCTTATTTTT 29496 30 100.0 35 .............................. AACGCAGACCGCGCAGCACTCAAGGCAGAGATAGA 29561 30 100.0 36 .............................. TAGCTTCGTCCAGCCCGTAGCCGTCCACGACGACCG 29627 30 100.0 38 .............................. AGACATTGCTGCTATCGGATAACGAAAAGCAAATAATC 29695 30 100.0 36 .............................. TGTCTCTTGAGATCGAGAAGGACAAGAACTCCTCTA 29761 30 100.0 35 .............................. GCACAAAGAGCTTTGAGCTCAATCCTAAAATTTTG 29826 30 100.0 38 .............................. AAGCTCCGGGCGACTTGGGACGGGTGTTCGAGGGTCTC 29894 30 100.0 36 .............................. CCTGAAAAGCAAGAGAACACTTTGCCTTTGTTCGTT 29960 30 100.0 37 .............................. TATCTCCGCAACACAGACCCGCTCGCGTTGTAGCGTA 30027 30 100.0 36 .............................. TAGAACTGGAACAGCCCGCGAGCGCGGTCGTCCTCG 30093 30 100.0 35 .............................. TATCCGTTAGCCATTTTATGGATTCGATACCCACC 30158 30 100.0 37 .............................. GTAAAATACAAAGATGTGTACACAAGACGGTAATCTT 30225 30 100.0 36 .............................. AGAGTCAGCAAGAGATGCAGACGCTATTTAATTTCC 30291 30 100.0 37 .............................. GTTGCGACCAACTGCTGCATCTCTCTTTTGACTTCTG 30358 30 100.0 35 .............................. ATATAGAAACTTTAACACTCAAGCGCCACAAATAT 30423 30 100.0 37 .............................. CTTATCAATTCTGCGTCAACAATAATTATTACGAGAC 30490 30 100.0 36 .............................. ATACAGAAATTATGATGTTGGGTTATCGTGATACAC 30556 30 100.0 36 .............................. TCAGTTCACCGTTTCTTGATTCTTCAAGCTCTTTTA 30622 30 100.0 36 .............................. CCGAGATGGCTAAGCCGTTCGGGAAAAGACCTGCAA 30688 30 100.0 35 .............................. CCTTAAGAACCACCTCAAATAGGATATATACTTAG 30753 30 100.0 36 .............................. TCTCAAAGGATTTTCTCATAGCTTCATTTGTTGTGG 30819 30 100.0 36 .............................. CACCCTGCTGAGGTGGGGGTATTGGGCAATTATGCT 30885 30 100.0 38 .............................. TGAAATCATAATCTGAGGGGAAAGAAGATGCCTTAATT 30953 30 100.0 36 .............................. TGTAAGGGGGGAGAAATGAAATATACATCCTCTCTC 31019 30 100.0 36 .............................. CCAGTAGCCGTCTAAAGGCTCTTCCACCTTGAACCA 31085 30 100.0 36 .............................. ATACTTTGGAGAGTTTTCCCAAGACCCGGTTCATCG 31151 30 100.0 35 .............................. TGCAAGTATCTTGTCTCCGTGATAGCTGTTGCCCC 31216 30 100.0 37 .............................. TCGTATGAATGCGTACGAGTCTTGAAGTAGTCTTTCC 31283 30 100.0 36 .............................. GAATATAAACATCGTAGTGATCGTTTGCTTTGCTTT 31349 30 100.0 37 .............................. ATGAAGAGTTATCAAGTCGAAAATGTTCAGTTGAATA 31416 30 100.0 37 .............................. ACCATACCATGTACAACGGACGATCACAGCAAAAACT 31483 30 100.0 36 .............................. AGAAAGTTGAGGGACATACACTCGACTCTATGCTGA 31549 30 100.0 37 .............................. TATTAAAATTAAACGTTGTTTGTGTTGTTTGATTATC 31616 30 100.0 36 .............................. GTTGTTACAAGAGAATAGCGACTCTTTACAACCACT 31682 30 100.0 36 .............................. GCTATCGAGCCTCTATGGCACGATGCGGTTCTGGGC 31748 30 100.0 37 .............................. CCTTCAGCAGCAATCGGGTCTGCGAAATAGATCTGCT 31815 30 100.0 35 .............................. ACTTTAATTATATCTAAATCCTTATCAGGATTATA 31880 30 100.0 36 .............................. CTAAGGTACGATTGATAGGGGGATGCGATAGTCGTT 31946 30 100.0 35 .............................. CCCCTCTGTCGCGAGCTTCAACAATTCTGTCTGTT 32011 30 100.0 37 .............................. TTCTCTACGAGAGAGATAGCGGCAGCCAGATTGATCA 32078 30 100.0 36 .............................. TCTCCTTCTCCGCCCCTATGACGATCGACATAGGGC 32144 30 100.0 37 .............................. TTTCTTTTTTATTGTTTCAGGGTTACGGCAGTCTTCG 32211 30 100.0 36 .............................. GCTGGGGGTGCTTGACGATATGCGTCCCATCCCACT 32277 30 100.0 36 .............................. CTCAGGGCGCTTGTCTGATAGTGGTACGAGGGTTGG 32343 30 100.0 38 .............................. CGCTCGTAGTCTCGTCGCCCGGCAACGTCTCAGCAAGC 32411 30 100.0 37 .............................. CGAGATGTGGCATAATAATGAGTTGCCCGTTTTCGCT 32478 30 100.0 37 .............................. TAGGGGAGGAGAAGGAGAGAGTCAGCACACTCGCAGA 32545 30 100.0 35 .............................. TGAAAGCTGAATTCGGGAGTCTCGTTATCTGCAAG 32610 30 100.0 37 .............................. ATCTGATGCAGAGGTGCAAACCCCTAACGGGCGCGTT 32677 30 100.0 35 .............................. ATACACGTCTCGGACGTTACCGCTTCCCATTTCCC 32742 30 100.0 36 .............................. GTGATAAACGGAATTCAGTAGGAATTTTGTTTATAT 32808 30 100.0 35 .............................. AAAGTCCGTCTGTTTCTGCATCGACGGACAGGGTT 32873 30 100.0 38 .............................. TTCCCGAAGCATTGAACTATAACGACTATCGCATCCCC 32941 30 100.0 36 .............................. TTATGTATGCCTTTTTAAGCACTTCTTCGCTAACCC 33007 30 100.0 35 .............................. ATGCTCATTGCTTTATCTCTTTCTTTGCTCTCTTA 33072 30 100.0 36 .............................. TGAATTTGAACAAGTCCGTTTGGGTTCAAGACGACT 33138 30 100.0 35 .............................. ACACACCCCTCCCTTTCGTTGTGTATCAGCGCAGC 33203 30 100.0 35 .............................. TGACTCGCTGGACAGAGCTAACGCAGGAGGCAGGG 33268 30 100.0 37 .............................. AAATACAGATACCCGATAAATGTGGTTAGCTCTGCAA 33335 30 100.0 38 .............................. TCTGTCCCAGTAGAGCGTCTTAAAGATGTCTTCCCACT 33403 30 100.0 38 .............................. CCCTTATTGTATAACTGCATATGGTACACCTATCTATC 33471 30 100.0 36 .............................. ATCGAGTGGGATATTTTATAGCGATACCGCTGTTGG 33537 30 100.0 35 .............................. CTCTTATGCACCACTGCACGGTGGAGGAGATAACC 33602 30 100.0 35 .............................. GATCACCCTGTCCCCCTCGGAGGTTACGTTCTGCT 33667 30 100.0 34 .............................. CTCACTCGGAGGCAAGTGCTCGTCCCACCATGGG 33731 30 100.0 36 .............................. AGATAAAATACCTTTTGGAAATATCGCAGATTACGA 33797 30 100.0 37 .............................. CCACGCGGATGGATCGAATGCTTTTATTGCCTGTATA 33864 30 100.0 37 .............................. TGATAGGTGTAAATTGTAGGTGTCATTTTGTTGTGCT 33931 30 100.0 35 .............................. GAATTTGTATATACAGAAATAATTAACTCATAAAC 33996 30 100.0 35 .............................. TCCTTTGTGATTTCGCAAAGCTATCAGGACAGTTG 34061 30 100.0 35 .............................. GCATCAAGTATCAAGGTAGAGCAAGTAAGAACAGC 34126 30 100.0 37 .............................. CAGAACCACCTGCAGAACTTAGACCTCGACCGCGAGA 34193 30 100.0 37 .............................. CGCGGATATTGGGGAAGCATCGTGGGACCATAAACAA 34260 30 100.0 38 .............................. CTCCACAGACCCCGCCTCGCTCAAACTGTGTAACGCCT 34328 30 100.0 34 .............................. CCATTCTCTATTATAACTAAGATTGTACGGTTTT 34392 30 100.0 37 .............................. CAACTGCAAGGGGCTTCGGACGCTATTTGTCGGGGCA 34459 30 100.0 34 .............................. AAACTTAAATCTTATATCGTACTCCCGCAGTAGG 34523 30 100.0 35 .............................. TTTCTCCGCTATTGAGCCTTGCAAGTATCTTGTCT 34588 30 100.0 38 .............................. GTAGCCGTCCACGACGACCGAGATAAGAGGCGTGGGAT 34656 30 100.0 37 .............................. AAAATTTGCAACAGGGGGTATAGTAGGGGGCAGCAGC 34723 30 100.0 37 .............................. CTCGCGACACTTGAAAGGCTCTGTGTATCGTACTCAT 34790 30 100.0 38 .............................. ACCTTAAAGGGCGCATCGTCGGGGTTTGGCGCACCAAT 34858 30 100.0 36 .............................. ACTATGGATGTCATAGTAGACAAACACTACAATGGC 34924 30 100.0 36 .............................. TCGCATTAAATTTTTGTCTTGTGCAAAAGTCTGAAA 34990 30 100.0 37 .............................. ATGAACATTCCAAAACATCTGATGACGGTTTTTAACG 35057 30 100.0 35 .............................. TACAAAACAAAAAACACCACCGCAATGCCAAATGT 35122 30 100.0 38 .............................. TTGTTTGAGGTGTATAAAGCATTGCTGCTTCTTGTTAG 35190 30 100.0 37 .............................. CACGTGGTTCGTAGATGGGTTGGTTTCTGGCATCTAT 35257 30 100.0 37 .............................. GAGCTTTCGCAAGGGAGCTGAAGATGCTCTTCACGTT 35324 30 100.0 36 .............................. GGAGAGGTCAAGAAATGGTGCGAGCATTATGATGCT 35390 30 100.0 37 .............................. GAATTGACCCCTATCACGATCGAGGAGATGGTGGACG 35457 30 100.0 36 .............................. GCTTTCCTTTCAGTCCAAGATATGCTCTGAGAGCAT 35523 30 100.0 37 .............................. GCGCATCTCCGTGAATATTTCTCCTTCCGAAATCGGG 35590 30 100.0 37 .............................. CACAGAGGAGGAGATAGACCAAATATGGGCGGAAGCC 35657 30 100.0 38 .............................. GCTTCGGACGGAAATTTCACGGATGCTTATATCCGTAG 35725 30 100.0 35 .............................. CATCAAGGAAGCGCAAGGTTTGCGTGTAGAAGAAA 35790 30 100.0 37 .............................. GCGATAGCTCTCGCGTAAGGATCCTCCACGCCCCACG 35857 30 100.0 37 .............................. GTCGCCTGTCGAGATAGACTGGAAAAAGGCATCTACG 35924 30 100.0 37 .............................. AGGACTGACCCGCTGAGCGTTGTATCTCAAAGCGCTG 35991 30 100.0 37 .............................. AACGCAGACAACATATATAACAAACATGAAGACGAAG 36058 30 100.0 38 .............................. TATGTGTTTATGCTCTCGTCGTGCAGTACGACGCTCTT 36126 30 100.0 37 .............................. ATGCATCAAGACGACCGTCTCTGATTGCTGCGTCTGT 36193 30 100.0 37 .............................. CACAAAATTGCCCCTTCGTTGCAAATATCTCGCTTGT 36260 30 100.0 36 .............................. AACAGAAAAAAGAGTGGGCGAAGCTCCTTTTTACGA 36326 30 100.0 37 .............................. GTTTTTTGTGACTGAAGGGATACCCGAAGCGTTCGGG 36393 30 100.0 37 .............................. CTATTGCGCAAAACGAAGCCTCTCTCACCGTCCACTT 36460 30 100.0 37 .............................. CGAGATTCAAGAAGGGGCAGAAGATAGCTGTTCAGCA 36527 30 100.0 37 .............................. GAGTCGTCAACGACTACGGTATACAGAGGACACTTGG 36594 30 100.0 35 .............................. TTGCAAGTATCAAGCACATAAACCTTCCCCCACTC 36659 30 100.0 38 .............................. GGGACGGGTGTTCGAGGGGCTCTCGCAGAGCGTCGACA 36727 30 100.0 35 .............................. CCTGTACGGGGAGGTCGAGATAGCCGCCGTGGTGG 36792 30 100.0 36 .............................. TTGTGATGCTGTCTGCTTGCGGTGAGACAGAGCTGG 36858 30 100.0 38 .............................. TTTTGAGTGTGGATGTTACGGTGCATGTTTCAGCGAAA 36926 30 100.0 37 .............................. TCTGTTCGACATTATCAGTTGTTTTTGAAACGTCTTC 36993 30 100.0 37 .............................. CTTTCAATTCTTAAGTGGATTGGAGTTTTGTATGAAG 37060 30 100.0 36 .............................. TTTGGTTATAATGAGAGGTATGCTGAACTTAAGTCT 37126 30 100.0 36 .............................. AAAATAATGAAAAAGACCAAAAACGAAATATTCAAC 37192 30 100.0 37 .............................. TATACTCCCCAGCTTATATTCTGTTTTGCAATGGACC 37259 30 100.0 36 .............................. AAGGCACGAATAAGATTATCACGTTTATAGATAGAA 37325 30 100.0 36 .............................. ACCTGCGAGGATGCCTGTCTCGAACTTGATTGTAGC 37391 30 100.0 36 .............................. TTTTGAACTCGCTGCAGATTCGAGACAGAGCGGAAT 37457 30 100.0 35 .............................. TCCCAGGTCGCCGGGGGCTTTGGCAAGGGAGCTGA 37522 30 100.0 38 .............................. CGTCTACAAAGCGCATCCAGATCGGATATTATACGATC 37590 30 100.0 36 .............................. TCTTCTTCTGCGTCAGACCAAAGATGCCTCCTGCGA 37656 30 100.0 35 .............................. AAGTCCGTCTGTTTCAGCGTCGACGGACAAGATTA 37721 30 100.0 37 .............................. CTTTTGTTTTTATCTTGTTGATATTCACCCCCATCCT 37788 30 100.0 35 .............................. GGGGTGCTCGATAGGAAGCACCGTACCGACGTATC 37853 30 100.0 35 .............................. CCCGAAAAATTTAAGGATGAGTTATTTAAGCGTGT 37918 30 100.0 37 .............................. AAGAGATGAGAAAAAGTAGAGGACTCAGGAATAACAA 37985 30 100.0 37 .............................. GTTGGAGGTCCCCTTCGCAAAGGACATCATCACCTTG 38052 30 100.0 36 .............................. GGGCGAACGAACGGACAAATAGTGTTCGACTACAAA 38118 30 100.0 36 .............................. AAGGCGTGCAGGACAACCAGCGTCCTGCAGCCGACG 38184 30 100.0 38 .............................. AGTCTAATGGAACTTACGAAGTGTCTAAAGGCTTCCTA 38252 30 100.0 37 .............................. ATGTAATTTCCCGCGAAAAGGTCGTTAGTGTACGACA 38319 30 100.0 37 .............................. TTGATGAACTCGATATTTCCCTTCAAGCCGGTAGAGA 38386 30 100.0 36 .............................. TGCTATCTCCGTCTATTGATACAACAACAGAGGATT 38452 30 100.0 35 .............................. GCGATTGGCTACCAGTTTATTCAAGATGAGTCTAA 38517 30 100.0 37 .............................. AATTATTCGCGTCCGCAGCGAAGACTTGCATCTTGCT 38584 30 100.0 36 .............................. CGTTGCCGTCCGCATCTGTAAAGATGAGATTGGCGT 38650 30 100.0 36 .............................. ACTTTATAACGGGCACAATCACTCTCACTGATGACT 38716 30 100.0 35 .............................. CCTCGAAAACAAACTCATCCTGATAGACCCAACAG 38781 30 100.0 36 .............................. AATAGTTGCCCGGTACGCCTCGCATCACTTCTCCCA 38847 30 100.0 36 .............................. TCCGGAATGTTCCGTTTTCGCCTCTCGTCATTATTG 38913 30 100.0 37 .............................. ACGGTCACAAAGTGGACGGTGAGAGAGGCTTCTTTCT 38980 30 100.0 35 .............................. ACAATGCAGAGTCTGTCTATTCCGCTCTGTCTCGC 39045 30 100.0 36 .............................. TCCTTTATATATGTCGTTTTGACTTGAACATAGAAA 39111 30 100.0 34 .............................. TACCCATACCAGGAAGAGGGGATAAATAAAGCCT 39175 30 100.0 37 .............................. ACCCTCTTGGGAATCAAGCAGGGAAATCGTTGTCGGT 39242 30 100.0 37 .............................. GCGATTGGTTACCAGTTCATTCAAGATGAGTCTAATG 39309 30 100.0 36 .............................. GAAGAGCTTACTCGCAATGTTTATTTTTTTACTCCT 39375 30 100.0 36 .............................. GCACAATCACTCTCACTGATGACTATTCGATTGACC 39441 30 100.0 35 .............................. TTGGTACCAGCTTGAATCTTCTTTCGTTATGCACG 39506 30 100.0 36 .............................. TAGCAAACCGGCTAAAAGAGAACAATCAGATCAAGT 39572 30 100.0 36 .............................. ATTTTCTCAAACCTTGGTATGCAGGAAGTCTCTAAT 39638 30 100.0 35 .............................. CAAGACAATCATTTGTTTCATTTGCAGTCTATTTT 39703 30 100.0 36 .............................. CAAACGATGACGAGGCTATTTTGCACGCTATGCAGG 39769 30 100.0 37 .............................. GAATATCCTCCTTTTTATGTCGCTTTCGAGGATATAT 39836 30 100.0 36 .............................. ATTACATGCGATAATACTCTCAGGTCTTGGTGTAAA 39902 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 185 30 100.0 36 CTATCAATCGTACCTTAGTGGAATTAAAAC # Left flank : CTCTTAAGGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCGACGGTTCGAATCCGTCATTCTCCACAAAAAAGAAGAGAGTCGTAATGTTATCTGGCATTGCGACTCTCTTTTTATACCCTCTTTCTACTCCTAAACTCATTAAGTTTCTGTTTAAGCATTTAATTTTATTATCTTAGGAAAGGATATTCAAATACGAGCCCACATACCCAATTCTTGATTCCCTTTATTAAGTGTCTGAAAATAAATCAGATAGTTGGAATAAAACTCTCCCTTTGTCGTCTGTCTCTACATTTGACCTGCATTTATTTCCCAAATTCTCTCAGAAATAATTCCATAAAATCTGATTATCAAATTATTAGAGTTGTTGTCGAACTCCCACTCTTTTTCTATTATTATAGAACGACAACTTTTCCCTAAAATTTATCCCCTCTTTCTCTTCTCTATCCCTTTGTTTGCATCACTTTTTTCATGTAATTTTACGG # Right flank : CGCTCTACTAAAAATAGAGCGTTATCATAATATACGACTATCAATCGTACCTTAGTATCTTCGCTGTTGTTTGTTAGCGTATTTGCTTTGATTGTTTCAAGCTTCTCTTCTACTCGACAAACTAATGTATTCTCTTCATCTTCTACTTCGACATAGAAGATATTGTAGTCTTGTATCTTGTTCAAAAAGCGTTCATATTCTTCTCGTTGCTCTTCTGTTAGACTTGCGTCGAAATCTTGTTCAAATTCTTCGTTAAAAAGAAATCTGAAGAAATTATGATCTGATTGAGCTTCAAGTTCTATGTACTCTCTGAAAGAAATTTCGTGAGTATTTACTTGTTGTTCGTAACTCTCTCTCAGAACTTCAATCTTGCTGCTGTTAATAGTTATCATTGCTGTAATTGTTTTTAGGTTTATACTTGAGTTTTATCTTTGCACTGCAAAGGTAATGATAAAAATATTACAAACAAACAAAAAGTAATGTTTAACATATACTTTAAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCAATCGTACCTTAGTGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //