Array 1 391741-393104 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020372.1 Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 391741 35 100.0 36 ................................... CCCAAGCACCACATTGAATACCCATGCCAGCACTCC 391812 35 100.0 36 ................................... TCCATCGGCGAAAGTAAAACCGTCTGCTGCGCCGTT 391883 35 100.0 34 ................................... CCAGGAACCATCTTTGTAGACGAAAACATAAGGT 391952 35 100.0 35 ................................... TAGGAGGGAGTGCAAAGTTACCAATTCGTAGACTT 392022 35 100.0 35 ................................... AGGGTATCCTCACCGTCCAGGAGCTGCCGAAGTTG 392092 35 100.0 34 ................................... CTTTCGCCAGGATATTGAGACTCTCCTCAAGATC 392161 35 100.0 35 ................................... AGCATCTGGAAGGACGTTATTCCGATCCCGCACCA 392231 35 100.0 37 ................................... ATCAGGGCGGCGATGGTTCTCAGGACGGGGTTGCTGC 392303 35 100.0 36 ................................... AGCGAAAGGGCACTCCACGCCGACAAGGCGAAAAAC 392374 35 100.0 36 ................................... TTTTCCGGATTTCCGCAGGCCTTGGCGATTACAAGG 392445 35 100.0 35 ................................... AATCGCTGTTGCGTCCGTCCACGAACGTGCGCCCC 392515 35 100.0 31 ................................... AATCTGATACTCGGAAGGATTCCCCGCTGCC 392581 35 100.0 35 ................................... TTTTCACTCATGATCGTCTCCGAACAGGTTGGGTA 392651 35 100.0 37 ................................... GAGACGTTGAACAGCTGGTTGATAACATCGGAATTGA 392723 35 100.0 33 ................................... GGACACTGTGACCACCCCGGCCGCCACCATTAC 392791 35 100.0 34 ................................... CATAGCAACCTCTATAATCTCACCTAGCTTAGGG 392860 35 100.0 37 ................................... TGTCGCTCACGACACGCTTGATGTCAAAACCGAACAC 392932 35 100.0 35 ................................... TTTCCGAAATTCTCCGATTGGGCAACATCAGGAAG 393002 35 100.0 33 ................................... CGTGACGGGCTCCCAGCCAAGCCGGTCCCAACA 393070 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 20 35 100.0 35 GTAGCGCTACTCCGAGCCGCAAAGGCTATTGAAAC # Left flank : CGGGACCTGGTGGTGATCCTGTGAGCGGGGGACTGGACCCGGCCCCCCGGTCGCGCTTGCACAAGGGGGCCTGGTGGCCCTGGTCATAGTTCCGGCCGGCCGGAGTCCAAGGCTTCAGCCTTGGATGGGCACGCCAAGGCTGAAGCCTTGGACTCCAACTGCGCATCGCCGGCCGCAACGATGAACGAGGCCGGCCTGGTGACGCACGACAGACCGCGCATCGCGCGCCGGCGGTCAGGCCCTCGCCGGTGATCCGGGAACCTCCCGGGCCGGCCGGCGCGGGTGTCGGCCGCCGACCGCAAGTCCAGCAGAACCAGCACACTACGGAAAGGACCTCAGGACGACTCCGGTCAGAGGTTCCCGGCTCTTTAACAATCAGCATCTTAGCGCCTGCACCCAGGCCCCGGCGGACGCCGGGACCGCCCGCCCGGCCGCGACTTCCGCAGGTTCCCGATTCCGGCTTGCAAGGCGCGGGGCGGACTGGCAAAATGAAGTCCGGA # Right flank : CTTCATCTTGCAAACCCTTGACTCTCGAGCCGTCGGGTGCGCGGTGCGCACGGTGGCGCCGCCCGGGGCACTCACCACCGCACGCGGGCGCGACCTCTCAAGGTGCGCGCGGCGCACCCTACGCCCAATGGGCTGCACAATTGCGCCTGGTGGTACTCGGGGGCCGCGATCATCGCGCCGACACTGGGAGCGCCGCACCCCAGTGCGGCCCGGGCTATCCGTAACACGCCACGCCGCGGTCGCACGCGAGGCCGCGCCGCACTGGGGTGCGGCGCTCCCAGGGGGCGGCGCGCATCCAGGTCAGGAGGCGCGCGGCCGTGGCGACAAGCAATTCGACTGTCACCTTGCAAAGCCACACAGGGCGCATTGCCGCTCTGATTAATCGGCTATTTTTCAGCCAGGAGCTCAGCCCGCGGCGCAGCGGCGTGCTAAACTGATGAGAAGACTAGTCATTAGTGGGGATGCCCGTGCAAACTTGGCCTGTTCAGAACGCGAAGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCTACTCCGAGCCGCAAAGGCTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA // Array 1 1881640-1879131 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020370.1 Candidatus Thiodictyon syntrophicum strain Cad16T chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1881639 36 100.0 36 .................................... AGCGAGGGGCAGTTCTGGTATCTGGTCTCGCGCAAT 1881567 36 100.0 37 .................................... TCGGCGAGTTGGCACAGGCGGTCATAGCTCTTGCCCA 1881494 36 100.0 37 .................................... CGGTTAGTATGTTGCTGGATCTGGTGGATACCGGGCG 1881421 36 100.0 39 .................................... CCCGCCTGCTCGCCGTGGATGCTCGCCAGCGCGTCATAG 1881346 36 100.0 38 .................................... CACGGCGCACGCGGTCTGCGCGCCGCCGACCGCCTCGA 1881272 36 100.0 37 .................................... GGCCGGCTTGCCCGCCATATGCTTATCGCTGACGGAT 1881199 36 100.0 36 .................................... CCTGGAAGCCGAAGGAGAAATCCTTCGCCTCGAAGG 1881127 36 100.0 37 .................................... CCGACTGGGCCCAATGGGGCCTGGCCGGCGCCGTCGG 1881054 36 100.0 38 .................................... GAGCCCGCGGCCGTGGCCGTGGCATCGGTAGGTCCTGG 1880980 36 100.0 36 .................................... GTTCCCGCTCGATCCCGGCCCGCGGGTGTGGTCGGC 1880908 36 100.0 37 .................................... GTCGGCGCGCCTGACTGGCCACTGGCAGCCGCACTGG 1880835 36 100.0 37 .................................... ATAATGATCGGCGCGGGAGAACTGCTATCGCCGCGCC 1880762 36 100.0 35 .................................... CTTGGGGGTGGCGTTGTGCTGATCAAAATCTTCGG 1880691 36 100.0 37 .................................... AGCAACCGCGCCAGCCCGGGATACTGCCAGGACGGCG 1880618 36 100.0 36 .................................... TTCGGCGTCGGTGAGGGCCATAAGACCTCCTAGGAG 1880546 36 100.0 36 .................................... GTTTCGGCATCGACCGATGATGACGCGGAGGGCACC 1880474 36 100.0 36 .................................... GGTGCTGAGGCGGTCGCGCTGGCTGGTGGGGGTGTC 1880402 36 100.0 37 .................................... CCCACCGACATCGTCTTCTGCCACTTGGCCGCGAGCG 1880329 36 100.0 37 .................................... TTCCCCTGACAGATAGTAGGCGGCCGTGCGCTCGACG 1880256 36 100.0 37 .................................... TTCGGCAGCGCAGACACGAAGGTCACCCGCCCGCGAT 1880183 36 100.0 35 .................................... TCTTGTAGCATCAACACCATCGCAATCTCTCCGAG 1880112 36 100.0 36 .................................... CAACACATCGTCATGGCGGATCAGGACCGTGGTGCG 1880040 36 100.0 36 .................................... GGCGCGGCTGGCTGTTATGTTGCCTACAACGATGCG 1879968 36 100.0 36 .................................... TGGGTCCCCTACGATTCCACCCCGACCCTCTACGAC 1879896 36 100.0 36 .................................... GCCGGGGGCGATCCGGTCAGCAGGTCCAGCGCCTGG 1879824 36 100.0 37 .................................... TTGGGAACCGCTGTCGTGGTTCGTGGATCGTCTCAAG 1879751 36 100.0 37 .................................... GCTGCCACTCGCGGCGGCGAGCAGTTCGAGCGACATG 1879678 36 100.0 38 .................................... TATGGCGATCCGCCTGAGGGCCTGCCGCGGTGTCTCGC 1879604 36 100.0 36 .................................... GAGTGGCGCCCCGGGCTTCAGAGCGCGGCGGAGCGT 1879532 36 100.0 38 .................................... CGGGGCACAGACCATGGGCGGACGCGGGGCAGCGAGTG 1879458 36 100.0 36 .................................... CCGTCCGCCCATCCGGGTATACCTGCGACCGCACCG 1879386 36 100.0 37 .................................... CGAGTTCGGCGCGGGGTTTCGCTTTCGGTTTCTTGGT 1879313 36 100.0 36 .................................... CGGCCATTGCGAGCAATTGGAACGCGATCAATGGAA 1879241 36 100.0 39 .................................... CTGACGATGATGACGACCGCCGAGGACTCTACTGATGCC 1879166 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 35 36 100.0 37 GTTTCCGCGGCGAATTCGCCGCGGCCTCATTGAAGC # Left flank : CGAATAGTGATGGCCGACCGGCGGGGACAGCGCAAGCTGTGGTGGCTCATCCACTGGTTCGTCAGCCGCCGGCGCCGCGGCCTCTTCGGCGCCCGTTCGCCCACGCTCCGCCTTTAGCGCACGCGCCTTCCACTGCGCGCGGCTGTGCTCCAGATCCCGAATCTTGACCTCCGCGGCCCGCAGGCGCTGCTGCCGCTCCAACGCTTTCGCCTTCCAGGCATCACGTGACCGCTGGAACAGGTTGGCCAGACGGCTCACTGGGCTCTTGAATGCGTTCATCACGTCGTGCGCGCTCCGGCAAGGCGGTCAGATCACCGCGCCAGTAGGCTGGCCAACCGTTCGCCGTTTGTCAAGGGCTGGGCATGAGCTAGTGTCGCACCGTCATCGTACCCACCCGAGCACAGAACCGACAGCCGGGCCTTCCCGGCAACACGCTTCTTGCATGGGCTTTTCAGCGCCTTTTTGGGTCAGATTGAACATCCTACCTCCCGCGAGATCGC # Right flank : GCCGCCTACGGATCGCCGGGACCGAGGTGGCGAGTAACCGTTTAGCCCCCCCTGTTCTTAGCCCCCTCGCGGACGGCGTGACGTAGTTTCGGCCAGCCACGCCCGGTCCGCACAGCGGACCCTACGGGGAGGCTGCGCGCCCGTAGGGTCCGCTGTGCGGACCAGCGACCGCGCGGCCAGCGGGATGGCCGGGAGTCGGATGAATGCCTCGCCGACGATCATAAGCCTACGCGACAAAGCTCGACGGTCCTGGCAAACTATGGCCCAAGCTTCTATACGAGAGTGCGCCAGCGCCGCCACGCCCCCGCCATGCACCTGAGCGATCACGACCTCAGACAATTCGACGACGCCTACCTGCAGACGCTCACGTCGGCGCAGGCGCGGGTGCTGTTGGGCAAGGCGCTGGCGGACCTGAAGGCGGCGCGCGAGCGGCTGGGGCAGAACCCCTCCAACAGTTCGCGGCCACCGAGCACGCGGCTGCCGTGGGAGGGCACGGGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGCGGCGAATTCGCCGCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.90,-14.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 1883646-1894325 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020370.1 Candidatus Thiodictyon syntrophicum strain Cad16T chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1883646 36 100.0 36 .................................... AACCAACCACGCCGCAAACGCCTGAGAGAACGTAAA 1883718 36 100.0 36 .................................... AGCCGAACTTCAAAAGCCGCGCACCAACGATAACCG 1883790 36 100.0 37 .................................... GCGCATCACGCCCACCGCCGTTGATTTGAGAGGGTCA 1883863 36 100.0 38 .................................... ATGCCAAGCATCCCCAGGTGCCCCATCTCCAATTCCGC 1883937 36 100.0 36 .................................... GTCGTTTTCTGTCGGTTTCAGATCCTTCTGTGTCCG 1884009 36 100.0 35 .................................... ATGATGCAGGGCTGCAGGGTGTCCTGCATCGCCTC 1884080 36 100.0 38 .................................... CGCATCGCCCGGTTGCGGTGTCTGGTCGATTGCGCCGG 1884154 36 100.0 36 .................................... TGCAGTGGGATGGGCCGCCGCCCCGGTGGGCCGCAT 1884226 36 100.0 36 .................................... GGCGCCGTTGCCGGTGGCATCGCCCTTGGCCCTGGC 1884298 36 100.0 36 .................................... GAGCCGGTACGCACAGACCTGTGGGGTCGGTGCGAG 1884370 36 100.0 38 .................................... CCGGACATCTGGACACCACTACCAGGCCAGCACCGGAC 1884444 36 100.0 36 .................................... TTGCTCCCGCCGTGACCGCTCGCCCTGGACGACATC 1884516 36 100.0 35 .................................... CTGCCCGCCGGCACCATCATCCCTTTCGCCGGTGC 1884587 36 100.0 35 .................................... AAGAGCATCTGGGACTCGCTGACCGGCACCATCAC 1884658 36 100.0 37 .................................... CGGAGGGCTCGACCGCCTGGGTCGCGGGCGCCGTCTG 1884731 36 100.0 38 .................................... CCGAGAAGCGCCAGATGCAAGACGGCATCCGGATGCTG 1884805 36 100.0 37 .................................... GCGCCTCACACAGGGCCGCCAGCCCCGCATAGCCCCT 1884878 36 100.0 36 .................................... GCCCGCGGCGTGCGCCGCCCGGTCCGCATCGGACAT 1884950 36 100.0 37 .................................... CCAGCGCCATGCCCCGGCGTGTCATCGAGCCGAAGGT 1885023 36 100.0 36 .................................... GTGGGGCGACCTGACCGCCTTGAGCGACGGCATCGC 1885095 36 100.0 37 .................................... GACCAAATAGTTGAAGTCGAATCAGCCTTTAATTCTT 1885168 36 100.0 37 .................................... GTGGGCACTGCGGCGGGCTACTTCGCGCCAAGCCGCG 1885241 36 100.0 37 .................................... ACCCGACGGACACTCGCACGCACCCGGGACCCCCGAC 1885314 36 100.0 39 .................................... CTTTGTGCAACAGCTCGTTGCACAAATTCCCTGGGGCCA 1885389 36 100.0 37 .................................... GACGCTGGGGGCGGCGCCGGTCGCCGCTCCGGGCGCG 1885462 36 100.0 37 .................................... GCGAAAGGCCGCGATCCTCGCCGGCCTGGCGGCCGGG 1885535 36 100.0 38 .................................... ACCGGCTACGGCAAGACGACGGCGACCACCTGGTTCGT 1885609 36 100.0 37 .................................... CGGAATACACCGTCGAGGATCTCCTGGCAGCCCTGGA 1885682 36 100.0 37 .................................... AGCGACCTCGGTATAGAACACGTCTTCGCGTTTGACC 1885755 36 100.0 38 .................................... CGCAGGCGACGCTGGACACCATCGCCGGCTGCTACCGG 1885829 36 100.0 37 .................................... GATCGCCACCCTCACCGAGCGGGCGGCCGTTGTCGGT 1885902 36 100.0 39 .................................... CGAGCCGCGCGAGTGGACGCGAGCGACGACCCGACCGGA 1885977 36 100.0 36 .................................... CACCCGCCCGGTCGACGGCCTCGCCAAGCTGCTGCT 1886049 36 100.0 38 .................................... CTGCGCGACCTGAGCATTTACCGGGCGTTCAACGGGCG 1886123 36 100.0 38 .................................... ATAAAGTGACTCGCGGTGCGTTGTGGGTCGGTATCGAT 1886197 36 100.0 39 .................................... CGGCGGAGATGTCTTGACCCCACTGCATCAGGCTCATGA 1886272 36 100.0 35 .................................... CCGACCGCGCGTTCCGGCGGTCGCGCAAGAGCGGT 1886343 36 100.0 37 .................................... CTTGTCGTGTGAAGGTTTGCCCGGTTGGTTCGTCGTT 1886416 36 100.0 37 .................................... CTCAGAAAGCGCGGAATACTCAACGACCACACGAGCA 1886489 36 100.0 37 .................................... GCGGCAGGCGCGGATTGTTGTGACTAATCTCGCGCTT 1886562 36 100.0 37 .................................... TGGAGACGCTCACCGAATCACTGCTGCGCCGGGACGA 1886635 36 100.0 36 .................................... CGCGGGCTCTGCAGACTGCTGGAACTCACTGCGGTA 1886707 36 100.0 37 .................................... CGCTCAGCCAGTTGGCCGAAGCGCTCCGGCCGATCGA 1886780 36 100.0 36 .................................... TGTTCAACGGGCGGCCGCCGCGAACACGGGGTTATC 1886852 36 100.0 35 .................................... GTGAACATGCGCCGCGCCGCCCGCTTTGGACGATG 1886923 36 100.0 36 .................................... GTGCTGATCATCGCCAAGGCCTACATAGAGGCCGGG 1886995 36 100.0 35 .................................... CCCGCGCCAGTCCTCGAAATGCCCATGCTCCGAAA 1887066 36 100.0 37 .................................... CTGTTACCTGGCGCTCGACCATGGGCTCTATTCGGGC 1887139 36 100.0 36 .................................... CTGCTGGCGCCAGCGGCCCCGGCCGACCTGGCCGGC 1887211 36 100.0 38 .................................... GATGCCGGACCCCGACACCCTCCTGCAGCAGGCCGGGG 1887285 36 100.0 38 .................................... CTCAGCACGTCGTCGATCGTCAACGACGCCGTGCTGAA 1887359 36 100.0 35 .................................... GACCCAAGCCGGCCGGGCAACCTCTGTGAGGTCTT 1887430 36 100.0 37 .................................... GCCCCATCACCAGCGAGGACCCCACCCCATGACAGAC 1887503 36 100.0 35 .................................... CCGCGGAGAGAGCTTACCTCGACGGGCGCACGATC 1887574 36 100.0 37 .................................... CTACATGTACGTCTGGGCCGATGCCGAGGGCACCGAC 1887647 36 97.2 38 ..................T................. ACCCCGACGGGTTTGGACTTGATCAGATAGCGCGCCAG 1887721 36 100.0 38 .................................... TACGCAACTACACAGGTACATCAATGACACAGGACGTA 1887795 36 100.0 37 .................................... GATCCCGAATCTGCTGGTGCTCGGCCGGGGTGAGCGG 1887868 36 100.0 36 .................................... GCCCGCCCCACGGACCGGCAGCTACAAGGCCCGCTG 1887940 36 100.0 36 .................................... GCGGGTGTCGCTGTTGGAACACATGGCCCAAGAAGG 1888012 36 100.0 37 .................................... CAAGCAATTGGATGATACTACGGATGGAGGTTGGTTG 1888085 36 100.0 36 .................................... GAACTCGAAAGCTGGTTCGAGTAGTGGACCCCAAAG 1888157 36 100.0 37 .................................... CACAGCGGGGGCCGAAGGCGCGACCGCGCCGCGGCCC 1888230 36 100.0 37 .................................... GCCGGGGCGGGCGCGCAGGCGCTGGACGTCCTCGATG 1888303 36 100.0 38 .................................... GACCGCCCGGCGGTCGACAGCGTCAACCGCTATGCGCA 1888377 36 100.0 37 .................................... ACGAGCAACCGGAGGACATCATGTTGCTGAGGGGACA 1888450 36 100.0 36 .................................... GGTATGAAAAAGAGATTGACCCAACGGGTATGGTTA 1888522 36 100.0 38 .................................... GTCCAGGCCGGGGCATCGCGAGCACCCTGGTTGTTCCC 1888596 36 100.0 37 .................................... AGTCATTTGGCGCCACACAGGCTGAGGCTTCGCACCT 1888669 36 100.0 37 .................................... ACCGCATAGAGGATCGCGTCACGCCGCCCGCCATCGT 1888742 36 100.0 37 .................................... AGCGGCAATGCGCGTATGGCAACACGATAACAGCGCA 1888815 36 100.0 38 .................................... GCTTCCGGCCGCAAACGGACCCTTCACGACCGACCCCG 1888889 36 100.0 36 .................................... CCGCGGTCGGTTCGGTGGGCTCGCTGGGGTGCTGGC 1888961 36 100.0 36 .................................... AGTGGGGCCGGATGAACCTGTTACCTCGGGGGGCAC 1889033 36 100.0 38 .................................... CTGTACACCGTCACCGGCTTGCCCAGGTCCGCCGGGTC 1889107 36 97.2 36 ........................T........... GACGACGCGCCCGGCACCGGACGCTTTGACGGCGAA 1889179 36 100.0 38 .................................... CGCAGGGGCGGCGGGGGTACATAGTCGCCGCGGGTCCA 1889253 36 100.0 38 .................................... CATCCCCGACGCCCACACCCGCGGCCCGCCTTGCACGT 1889327 36 100.0 37 .................................... TCCGAGGGACATCCGCATCAACCTGTATTCCTGGGCC 1889400 36 100.0 41 .................................... AAGACCGATGCGGACGAACTCAAGCAGGTCAATGACAAGCT 1889477 36 100.0 37 .................................... AACGGCGCCAAATCCACCCGGGGCTAACCCCACCACC 1889550 36 100.0 37 .................................... GCGGCGCACAGGCTACGCACAGGCTGCCTTTCCGCGG 1889623 36 100.0 37 .................................... ACCTCGCGGCACGCCGCGGCCTCGCACAGTGACCCGG 1889696 36 100.0 37 .................................... AGCGCGACGACGCGGAGCCGATCCTGCCGCTGCTGGC 1889769 36 100.0 38 .................................... CTGCCACCTCCCAGGACCCGACGCCAGAGCCCGAGAGG 1889843 36 100.0 37 .................................... CGGCGAGCAGCGTCGCGTCCTCCATGTCCAACCCCTC 1889916 36 100.0 36 .................................... TGGGCTCTATTCGGGCCAAGTCAAGGGCTATTCGTT 1889988 36 100.0 39 .................................... GCGCTGGAACCGTGTGGAACTGATAGAGGAACCCGTCAG 1890063 36 100.0 37 .................................... GTCGTCAAGGCGCGTGATAGCGCCCCCGACACCGCGG 1890136 36 100.0 37 .................................... GGCGTCATGGCGCACGCGAAATGCGCGCGCCGAAATG 1890209 36 100.0 36 .................................... CTCGTAGACATGGGCGGGCTCCCATCCGGTATCGCT 1890281 36 100.0 38 .................................... CCCCGAGCCCCGCATAGCGCGCCATCAGTGCCCCCCCC 1890355 36 100.0 36 .................................... CAGGTAACCCCAGTCTTCGACGAAGCCAGCGGGAAG 1890427 36 100.0 37 .................................... TCCAAATGGTCTGGGACAGCGGCGACGAGAGCTTCGA 1890500 36 100.0 35 .................................... AATTCAGGGTGGAAACAAGGTTGAGCAAATAGCGA 1890571 36 100.0 37 .................................... GGTCAGGGGTCATATCGAGGACCTTGTAGAGGTCATC 1890644 36 100.0 37 .................................... CGGAGCCCAGCGCCCCCGCCGGGGCGGGGCTCGATGA 1890717 36 100.0 38 .................................... TTGACGCTCAGCGGGACGGTGGGGGCGTTGGGGTCCGT 1890791 36 100.0 36 .................................... GGGGAGCAGACCGAGCTACCCCTCGACGACATCTCC 1890863 36 100.0 36 .................................... CACCCCAAATCTATAGAGCGAGCACATGACCGACAC 1890935 36 100.0 37 .................................... GCCCCTGACCAAGACCACGGAGACCCACGATGCCGAC 1891008 36 100.0 37 .................................... ACGGACTTCTGAGCCGTCTATTCTGCACACGGCTCGG 1891081 36 100.0 37 .................................... GGCACCTGCGCTCGGCCAAGTCGCAACGCGAATCCGC 1891154 36 100.0 37 .................................... TGGCGACTGCGACGTCCTGGGCGAAGGTGTACGCGGA 1891227 36 100.0 38 .................................... GAGTGGACGGCATGGGGCGGGGCCTTGATCGATGGGTT 1891301 36 100.0 39 .................................... CTCGATTGCGGGGCGCGCGCGCCACTGGGGGGCGCCGGT 1891376 36 100.0 37 .................................... CAGCGGAACAGCGCGCGGCGCAACGGCTTGCCAACTT 1891449 36 100.0 36 .................................... AGTGACCATTGGGGCGCAGACCGTCCGATTTCCCGA 1891521 36 100.0 36 .................................... GCTGAGCCCGCAAATAAAGGGCATCACGCAGTGGTT 1891593 36 100.0 37 .................................... CCGCGCACCCGGGCGGCGAGGGCTGGGGCTGTAAATG 1891666 36 100.0 36 .................................... CAGGTCGAGCAGGCCGGCTTGGGCCGCGGCCGCGGC 1891738 36 100.0 37 .................................... TTGAGGTCGAGACGGTAGAAGTACCTGCGACGGCGAG 1891811 36 100.0 37 .................................... CCAGCCCCGGGGCGTCGGACGCTGGAGCGCGCAGCAT 1891884 36 100.0 38 .................................... CCCAGCACGAAAGGGCCGATGCAGACTTTGACGCAATC 1891958 36 100.0 36 .................................... AGGGCTTGCCGCACCTGTCCAAGATCACCCAACACA 1892030 36 100.0 38 .................................... ACCCCCGAGGCATTGCAGGAGATCCCCAGGACCGCGAG 1892104 36 100.0 37 .................................... CAGATGACATCGAGGAATACAGGTACAACGGCGCGCT 1892177 36 100.0 37 .................................... GTGGTGGAATAGCGATGATGTGTGCGACAGGATAGAG 1892250 36 100.0 38 .................................... CACCAGGTCGCGGACCCTGCCGCCCGGCCGGACGCCTC 1892324 36 100.0 37 .................................... TTTTTTTGTTAATTTTAATGATTTAGGAGTTAATTAT 1892397 36 100.0 36 .................................... AGCCTTTTGTTTCTCGTGTCAGGGCTGAAGCGGTTG 1892469 36 100.0 37 .................................... GCCGTTAGGGGTCTGGCAGGTGTCCCCAGTCGAAGTC 1892542 36 100.0 37 .................................... GTTGATGGCGAATGCAAACGGAAATGTCTGTCAGGAC 1892615 36 100.0 36 .................................... GGTTTGAACGCGGGTGGATAACATCGGCAGATCTCC 1892687 36 100.0 38 .................................... ATACGCGACAATACGCGCGGGTCCGCTTTTAGCGCAGA 1892761 36 100.0 37 .................................... CTTGCTCCAAGCTTCTAGTGCCCCCGCTGAGTCCAAC 1892834 36 100.0 38 .................................... AACCTTACGGGAAGCTTTACCCGTATCACTCCCGCCGC 1892908 36 100.0 39 .................................... GACGCTAAGAAGATACTGTTCTATACCCAGGCTGAAATA 1892983 36 100.0 37 .................................... ATCGCCTTTTCCAGCCAGCCGACTAAGCCCTGGGTCT 1893056 36 100.0 37 .................................... CGTGCGCCTGAAGGTCGGCAGCACCGAACTGCCGATT 1893129 36 100.0 36 .................................... GACCCGGCCGTGGCCGACCGCGTGGGGGCCTATCTG 1893201 36 100.0 36 .................................... AGTCGCAGCGGGCTGAGCGCCGCGGCGCTGCTGCTG 1893273 36 100.0 37 .................................... CACCGAAGCGGAATGGGATCTGTTTGCCCTGATGACG 1893346 36 100.0 37 .................................... GAACCGGCCGAGAAAGTAGCAGGTGGAAGTATGGCAG 1893419 36 100.0 37 .................................... CTTAGGCCCCTACACGGCGGCGGACCTGCTCTGGTGG 1893492 36 100.0 36 .................................... GTCCGCCGCCGTGTAGTTGCCCAAGTCCTGTATCGG 1893564 36 100.0 36 .................................... AGTCGCAGCGGGCTGAGCGCCGCGGCGCTGCTGCTC 1893636 36 100.0 36 .................................... GTCGGCGTGGCTGTCGCTGGCCTCGTCGGTGGCCTC 1893708 36 100.0 35 .................................... TCCGGGTCCGGCAGGGCCGCGATGGTGGCGGCGCG 1893779 36 100.0 37 .................................... GACCCACCCCGTCATCACCGCGACCCGGATCGAACAA 1893852 36 100.0 37 .................................... GGATCGGCTTTGATGCTCATGTCGCTGCTCCGTGGGG 1893925 36 100.0 37 .................................... TCATGCAAGACATATACATAACCAATGGGGACTGGTT 1893998 36 100.0 37 .................................... TGTAGCGCAGATAAGCCGCCGCCCACGCCAGGAGCCC 1894071 36 100.0 38 .................................... CAGCAGGACGGGGCGCCCCTGTTCCAGGGCCAGCCAGG 1894145 36 100.0 36 .................................... GAGGGGGCAACCTCCCAGGCACCCGGTTCCTAGATG 1894217 36 100.0 37 .................................... GGCCGTCCTCGGGTTCTCCTCCTTCATAGTCGCTCAA 1894290 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 147 36 100.0 37 GCTTCAATGAGGCCGCGGCGAATTCGCCGCGGAAAC # Left flank : TTCAGTCGCACCTCAAATCCAAGGGCCTCCAGCGGGGCTCCCAGGAATCACTCCAGGCCACGCTGCCACCGCAGTCAACGCTCACCCCACGCACGGCGGCCTTTACCCAACAGATGCTCGCGAAGGTGGCAGTGGAAGCCGCCAAGATCCCGACTGATAATGTCTGGCTGGCATCCTCCGATATCATCGAATCGGTCTTCGGGAAATACAAATGCTTCACCGCCAGGGGGCCACTCAAGGAGATCGGCAAGCTGCTGCTTGCGATTCCTGCCTTCATCGCCGACCTGGCGACTCCGTTGATTCGGGAGGCGATGGAATCGGTGCGTACGATTGATGTCGAGCACTGGGCGCAAGCGCATATCGGTGCGTCGATGCTGGCCCGGCGTCGGCATGCTCTCATTGATTCGTTATCAAACACTAAAACTGTATGAAGATAATTTGTGAAATAGGTCCGATATTGAACACCCTACGCGGGAGGTCATCGTGGGCGATGACGCGGA # Right flank : CGGCCCGCGCTGGAGCCCGCGGCTGGCGCGGGCGGCGGGGCGCTTTGCGAGGGCTCCCCGCGCGGAGGCCGGTCTGGCATTCGGGTCATCATGCATGGCAGCATAATTGTAACCCAGTTTGCTGATTTTTAAAGAGCGGATTTTTGCGAGCGCTCCCGGGGTTTGGCGCACCACTGGAGCGCTCGCGGGGCGACGGCGGGGTCAGACGATCACGGCTTCGTGTTCGATGGTGACGAACTCGGCTTTGCCAAGGCTGACGACCCGGGGGATGACATTATCAGCGACGCCCAGGTCGAGCAAGACGATGTGGTCTTCGTCGTGGTTGATGATGCCGTCCAGGAGGGCGATCAGTTCGGCATGTTGCCGGGCGGTGAGCCGACACTGGAAGACGGAGAGTTGGACCCACTCGCCGTAGCCTTTCATGAGTTTGAAAATGCGGCGCCAGCGGCCCTGGTCGGAGATGTCGTAGGCGACGATGTAGAGACGTTGGTCCATGGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCGCGGCGAATTCGCCGCGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.90,-14.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 3 4626522-4629249 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020370.1 Candidatus Thiodictyon syntrophicum strain Cad16T chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4626522 37 100.0 36 ..................................... AAAAAAACGCTGAGCTTGCCGAACATCTCAGGTCGG 4626595 37 100.0 36 ..................................... ACCGTGGCCATTGTGCCAGTCGCCTTGCCTTACCGG 4626668 37 100.0 38 ..................................... AGAGGACTACGGTGAGGAGTCTGACTTCTTCAAGGGGG 4626743 37 100.0 37 ..................................... CCCACCTCGCTGAAGAACCGGAACATGGAGATGTTGG 4626817 37 100.0 38 ..................................... AAAGGACCTAGCATGACCACCACCGACACCACCCGCGG 4626892 37 100.0 36 ..................................... ACGGCAACCCAGGTGCAGGCAGGCACCACTTTGCGG 4626965 37 100.0 37 ..................................... ACCCGGTGCAGCTCCTGACCGGCAATCCTTAGACGGG 4627039 37 100.0 36 ..................................... TTTAGGATCAAAGATGAAATTTCGCTTGCCGGTTGG 4627112 37 100.0 38 ..................................... GCTTTGGATACCCTCAGCAAGCCAGCGTTCGATCTGGG 4627187 37 100.0 36 ..................................... ACTTGTCCATTGTGATATCTGTTCTTGCCTTTCGGG 4627260 37 100.0 38 ..................................... TTAATATGCCGCTCATCAATCAGACCACGCGCGCGCAG 4627335 37 100.0 38 ..................................... AGTGTCGGAAGAACCATCAGCCCACGCGCCCGGAGCGG 4627410 37 100.0 38 ..................................... ACCAGATAATCACCGCTTAAGCGGACCTCATCGCGCGG 4627485 37 100.0 36 ..................................... CTGCGACCGTTCCACAGCACCACCCAACGACCACGG 4627558 37 100.0 37 ..................................... GACATAATAGGGCTATCCGGCCGCCCCTCTTGGCGGG 4627632 37 100.0 35 ..................................... CGCACTGGGCTGTTGATCGATCCGCAGGAGGCGCT 4627704 37 100.0 36 ..................................... ATTCTGGCGGCTCTATCGATACCCCGGACGCAGCAG 4627777 37 100.0 34 ..................................... ATGCTCCGATCGGCTGCAGGCGCACTTCGAGGCG 4627848 37 100.0 35 ..................................... GGATCAGTCCACGCGGGGGCCGACGAGGTAGGGTC 4627920 37 100.0 34 ..................................... GCCTCACCGTGCCGACCGGCGGGCCTGACCATCT 4627991 37 100.0 35 ..................................... GCCTCACCGTGCCGACCGGCGGGCCTGACCATCTG 4628063 37 100.0 35 ..................................... GCGACTGCCTTCAGGGCATCGGCCGCCCGCTGCCC 4628135 37 100.0 35 ..................................... TTATGACTCAAATTGTTTATGAGATTATTCCGATA 4628207 37 100.0 35 ..................................... ACCGCGGACGGCGGCACGATGGAGTTGGTCGGGGC 4628279 37 100.0 34 ..................................... CCGCTGAGCGTCAACGGCACCCTCGTTGCGCCGA 4628350 37 100.0 35 ..................................... CGGTCGGCCCCGGGATGAGCGACCGGCTACGGCGC 4628422 37 100.0 36 ..................................... ATGGTATGGCTCTCTCTCTCTCTATGCTATGGATGG 4628495 37 100.0 35 ..................................... GACCGCCCCGGCCCGCGCCAGGGCGATCAGGGCCG 4628567 37 100.0 35 ..................................... TCCATCATGAATAGGCTGCTCATTGGGTTGCCTCG 4628639 37 100.0 36 ..................................... CGGTAGCCTGTCCGTTTCAATCGCAGTTTGAATATG 4628712 37 100.0 35 ..................................... AGTTCGCAGGTACGCGCGATGTATGACCGCGGTAA 4628784 37 100.0 34 ..................................... ATTTACTGTCCGATATCCAGGACGTGCGCGAACG 4628855 37 100.0 35 ..................................... CGGCTGGGACCCGACGCCTACCCCCGGAACCGACC 4628927 37 100.0 35 ..................................... TCCGGCCACGGCCTCTTGCTTGGTCGCGCCCTCGA 4628999 37 100.0 35 ..................................... CTCCTGTCCCGCGACCCAATCCCAGGGCAGCAGGC 4629071 37 100.0 34 ..................................... ATGACCTGCCTCCGCTGTGGGCCGCCGGACAAAC 4629142 37 100.0 34 ..................................... GGTCGGCGCAGTATGACACCGAGCTGGCAATCGA 4629213 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 38 37 100.0 36 GCATCGCCCGGCCAATTGGCCGGGCGCGGATTGAAAC # Left flank : CTCGCAAAATAGACCAGGGAATCGCGCCATGCTCGTCATCGCCACCTACGACGTCTCCACCGAAAGCCGCGAGGGCCGCCGCCGACTGCGCCGCGCGGCCAAGGTCTGTCTGCGATTTGGCCAGCGGGTCCAGAAATCGGTCTTCGAGTGCCAGGTCGACCAAATGCAGTTTGAAGAGTTGGAGCGCGACCTCCTCGCCGAGATCGACCTGGCGGAGGACAACCTGCGATTCTACCGGCTGACCGAACCCCACGAACTGAGGGTCAAGCAATACGGCGTCTTCCGCTCCCTCGACTTCGAGGGCCCGCTGGTCGTGTAGCGCGCGAACCCCAAGCGACTGCCCAAACCCGGGGGGGTTCGCGCGACTTGTAACCCTATGTTCTTTAACAACTCGGAACACCGATCCCACCCTGAAGCACCGATGCGACTTGCGCCAGCGTCCCAGTTCGCGCAAGCTTGCTCGGTTCCGCTGCGCAATCAACCGGTTGCCGCCGCGGGGG # Right flank : CGACTACGAAGACGGCATGATCGCCGAGCGCGACACCGAACCGGCGTCGCGCTGTAAGCAAGCCGGGGCGCGCTAGCCGGGCGGGATCGACGCCGCCGCTTTGCCGCCCCCCGCCAGCGCCTCCCGGCTCTGCTGGTCCAGCGTCACCATGAGGTCCGCGCGGCGGAACGGCATGGTGATGCCCTGCGCGGCAAAGCGCCGACCGATCTCCAGCAGGATGCTGGAGCGAGGCCCCCGGCCCAACTCATCACCCCCGCTGATGTCGATGTAATAGGTGATATCGATTTGGATGGCCCACTCGCCGTAGTCCGCCAGATAGACCGCGGGGGCCGGCTGTTTGAGCACCAGGGGCTCGTCGGCCAGGACCTGCGCGATGATCCGCATGGCCAGTTCCACGTCGTCCCCGAAGCCGATGCCGATGCGGTGCAACTGGCGCAGCACGGCGTCGCTGCGCGTCCAGTTGGTGAACTTGCCGCTGATCACGGCCGAGTTCGGGATGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCCGGCCAATTGGCCGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATCGCCCGGCCCAACGGCCGGGCGCGGATTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-19.70,-19.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 5078034-5085199 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020370.1 Candidatus Thiodictyon syntrophicum strain Cad16T chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 5078034 36 100.0 36 .................................... GTCGACGCGGATATCCGACACGGCGAGCTCGACCAC 5078106 36 100.0 38 .................................... CGGGAGGTCGCGTGATGGGCGGTAAGCGTGGCGGTGGG 5078180 36 100.0 37 .................................... CCAGTCTTTCGCTTCCGTTTTGGTCCGGAAGCTGCGC 5078253 36 100.0 38 .................................... CATTCGGGCACCGCCGCGATGGACGCGCGGGCGGCCTC 5078327 36 100.0 38 .................................... TTCTCCCAGGCGATATGCCGCGCATGATGCCGCCGCTG 5078401 36 100.0 36 .................................... CTGCACGCCCACCGGGTTGGTCCATGTGCCGACAGC 5078473 36 100.0 38 .................................... GTTATTTGCTGCGCACGGATGAATACGGGCGAAGCACT 5078547 36 100.0 37 .................................... CATCATTTAGCCGCTTCGTCACAAAATCCCCACCCGG 5078620 36 100.0 36 .................................... TCGGTAGCGATGGCTCGTCTGTGCTAACCGATCGGG 5078692 36 100.0 37 .................................... TCCCCGGACTTTAGCAACCCCCACCCAAGCGGCGCAG 5078765 36 100.0 38 .................................... TGCACCCGCGCCGCGCCGCCCTCGGCGCTGGTCATGGT 5078839 36 100.0 37 .................................... CTGGCGACTGCGGCCGATGGGTCGGTGCTGTTGGACC 5078912 36 100.0 37 .................................... TCTGGGGCGGTTGGGTGAGTGCCTGAACGGTCAAGAT 5078985 36 100.0 35 .................................... CCTTACTATTTCGATTGGTTGACGACTCAGCGGGT 5079056 36 100.0 36 .................................... GAATCTATTGCGCGCGGTTCCTATGGGGGCCAAGGG 5079128 36 100.0 37 .................................... CTTGTTTGACGAGGCCCGCGACTACGTGTCCACCTTC 5079201 36 100.0 37 .................................... ACGAAGTCGGTGGCGTCGGCGATGGTGATGGTGAGCC 5079274 36 100.0 36 .................................... GTTGCTCGCCGTCGCAGGGACTTCCGCAGTCTCGAC 5079346 36 100.0 36 .................................... CGCCTCGGTCGCCGCGCGCTACCGCGGTCGCGTCGT 5079418 36 100.0 40 .................................... CTCGTGGATGAAATAGCAGGACGCTCAAACCGAGCCTTTT 5079494 36 100.0 35 .................................... CTTGATCGAGTGAAGCCTTCGGAGATCCTTTGGTT 5079565 36 100.0 36 .................................... CACGAGACCGACCGGCACCGCCGTGCTATTCCCTGG 5079637 36 100.0 34 .................................... GATCAGGTATTGGGACCGCGCCGCCACCATCCCG 5079707 36 100.0 37 .................................... GGGTGCTAGAGTGTGCTTACTATGCGCAGCCACCCAA 5079780 36 100.0 37 .................................... AGCACTTCGCCGCTTCACCCGCCTCGATCAGCGCGGA 5079853 36 100.0 37 .................................... ATCGCCACCCTGGCCCTGACCCGGGCCGCTCCGTGAG 5079926 36 100.0 36 .................................... CCGGTCAGCGTTGCGTTACCGGCGGCGAGCGCCGCG 5079998 36 100.0 36 .................................... GCGCCGGCGCACTGCGCAAAGGAGGATAAGTCCATG 5080070 36 100.0 39 .................................... CGGACCCCGGCCCGGCGCTGCTGGAGATCGGCGAAGAAC 5080145 36 100.0 35 .................................... TTCACGATCGGCGCGGCCGGCACCGTGTCGACCAC 5080216 36 100.0 36 .................................... GCGACCGGCGCGTCCGACCATCCCACCATGGCGGTG 5080288 36 100.0 36 .................................... CGTTTATCGGGTGAGTGGTGATTTATGAGCGTGCTA 5080360 36 100.0 37 .................................... CTGGCCTGGCACGGGCAGCAGGTCAAGGTGGGGGTGG 5080433 36 100.0 38 .................................... ACCCCGCGACAGACGCGGCTGCCGAACTGGCCCCGCTT 5080507 36 100.0 35 .................................... AGGACGATCCAGGGTTGGCCGGGGGATGTCTGGCT 5080578 36 100.0 38 .................................... GTTGGGGGGCAGTGCACGGGCTGCGCGGTGGGCTCGGC 5080652 36 100.0 39 .................................... AAGAACTCACGGGCGCCGAAGAATGACGGCAACCGCGGT 5080727 36 100.0 39 .................................... GTCCCGTTGCAGGTGGTGGAGATCGGCGCGGCCGACCGG 5080802 36 100.0 35 .................................... TTCGGTGCGGATAAGGCGGCGGCGGAACTGGCGGC 5080873 36 100.0 37 .................................... ACGCCAATCGTGACCGGATGCCGATTGCGCACGGGGT 5080946 36 100.0 38 .................................... TCCCAGGTCCCCGGCTGGACCGCTGGAGATCGGATGAA 5081020 36 100.0 35 .................................... TTCCTCGCTGAAGGCGTAGAGTAATGCGCGATCAT 5081091 36 100.0 37 .................................... GGCCGGCGGGTATCCGGCAAAGCGATATTCCCAAAGA 5081164 36 100.0 37 .................................... CCGGTCACCGGCGCACGCGCGGCGACCACATGACCCT 5081237 36 100.0 37 .................................... CGCAACGATGGTGGTCGACTGGGGTCGACCTAGCGCG 5081310 36 100.0 36 .................................... GGCCTTCTCGAGTACCCGATGGGTGATGATCAAGAA 5081382 36 100.0 36 .................................... TCACGTTCGACGGTCCGCCCATCCAGATACGCACGT 5081454 36 100.0 37 .................................... AACTGGCCTTTAAGGGCTTTTCGTGGCAATAAGTGAT 5081527 36 100.0 37 .................................... ATGCGCCGCGGCTTCCTTGTCGAAGACCGCCATCAGC 5081600 36 100.0 37 .................................... CCGGCGCCAACGCTTGATTATGCCAAGCGTGTTGCGG 5081673 36 100.0 36 .................................... AATCGGCGTCCCGGGAGCGAACTGGGAAATCAGCAG 5081745 36 100.0 37 .................................... GCTATGAGTGGATCGAGTGGGCGCTGACCGCGCCCGG 5081818 36 100.0 37 .................................... CTGCCCATCGACGAGGCCGGCCAGGTCGACCTGCCGT 5081891 36 100.0 38 .................................... GATCGGCATCCTGGTCGGCGCGCTGCATGTCTACGAGG 5081965 36 100.0 37 .................................... GAGCGGCGCACCTGGCCGTCGATGACCACCGCCATGG 5082038 36 100.0 38 .................................... CGTCACAGGCTTATCGCCCCCCTGACACCGCCCATCAA 5082112 36 100.0 36 .................................... GCTGACGTGCCCGCGGGCCTCGCGGCCATCGTCGCG 5082184 36 97.2 36 ......................A............. GTCCCGCAGCGGGTATTCGTGGGTCGCGATGCGGCG 5082256 36 91.7 37 ................T.G..A.............. GAGGTCGCGGCCGGTGGATTCTCGAAGGTGGCGAAGG 5082329 36 100.0 35 .................................... GGGGCCTTCCGCGGGCAGGTGCTCGACGGGGCGCT 5082400 36 100.0 37 .................................... TAGGTGAAGGCGGGAAATAGCTCGAGTTGCCCATGGT 5082473 36 100.0 37 .................................... TCCTGCAGTACGGACTGGCAGGCGTCGGCCTCGCCAG 5082546 36 100.0 38 .................................... CAGTGCGGTCAGGGCTGCCAGGATGGCCGTCTCGTCGG 5082620 36 100.0 37 .................................... CGCCGCGCCGGAGGCCGCCGCCGCCCTGGCCGCCCGC 5082693 36 100.0 36 .................................... TCCTCGAAGCGCGCGGTGAACTCCGTGATCGTCATC 5082765 36 100.0 35 .................................... CAGGCTGGCGGGCTCGGGCACGCCGAAGGCGTCCG 5082836 36 100.0 38 .................................... ATCTACTTCCGGGCCTACACCCGCCCCAATCCGATGCA 5082910 36 100.0 35 .................................... TGGGTTCGGTGCTGACGATGCGTCCGGTGTGTGAT 5082981 36 100.0 37 .................................... GTCAGGCCGCCCAGCGTGCCGGCCACCGCCACGGTCA 5083054 36 100.0 37 .................................... ACCGCCCTCGGCCTGCTGATCCGCGACGGTGCCTACT 5083127 36 100.0 37 .................................... GCGGCCGTCTGACCCGCCGCTGCCGGTGCTGTACGCC 5083200 36 100.0 38 .................................... GGTGCCGCCCGGGGCTGAGGGTAATCTGCTCAGGTGGC 5083274 36 100.0 37 .................................... ACCTCCGCAATTAAATCCCGCGTCGCCCCCGGCGCAT 5083347 36 100.0 38 .................................... CGGGGCCGCACACTGCACGCATTGGTTATCGCTACCCT 5083421 36 100.0 37 .................................... TGTCGTTAATCCCTTTAGCTTCTCGAATTGCGCAAAC 5083494 36 100.0 35 .................................... GCCGACCGCACCGCATTCCTCAAGGAAAAGGTAGA 5083565 36 100.0 36 .................................... ACCGCGTACCGCTCGATTTCCCGCTCAATCCAGGGC 5083637 36 100.0 37 .................................... CCGCTTTCGCTTAGTCCGAACAGCGAGATTAGGAGTT 5083710 36 100.0 36 .................................... GCCGCCATCGACACGGGACCAACCGATGTGGTGAGG 5083782 36 100.0 38 .................................... GCTGCGCACGGTCGGCGCGAAAAAGATTGCAGCGCCGG 5083856 36 100.0 36 .................................... GACGGCGACCGACATTTGATCCTTGGCCTGGGTCCG 5083928 36 100.0 36 .................................... GAGGCGGGCGGTGAGGATCTGGTCGCGGCGGGCTTG 5084000 36 100.0 36 .................................... TGCACGTACTGATTAGCGATGCTTTCGCGCGTCAGG 5084072 36 100.0 37 .................................... GTCGCAATCTCCGGGTGGTGATCCTCGATCCAGGCAG 5084145 36 100.0 35 .................................... GGCGAAGGCTTCCGCCAGGGCGCGCTCCTGCTCCG 5084216 36 100.0 36 .................................... ATGGCCAGCGTGAGGGCCTCGCCAGCGATGGCGGTC 5084288 36 100.0 37 .................................... GACAGGTTGGACGGGACCAACAACGGCGCGGGTTGTG 5084361 36 100.0 38 .................................... ACAACTACGGGAGGGGATACTAGCGGGTGTGTTGAACT 5084435 36 100.0 36 .................................... GTCCTCAGACTGGTTGGACGAAGCAACGCGAAGACC 5084507 36 100.0 37 .................................... TCCAGGGCGGCGAGCAGGCGCTTCAGGGTCGCGTCGT 5084580 36 100.0 37 .................................... ATTTGCAGCGGGGTCGCGGACAGCGGCGCGCTGCTGT 5084653 36 100.0 37 .................................... AAACGGGGTTCTGGGTTAGGGACGAAGATAGTCCGTC 5084726 36 100.0 37 .................................... GGAGATCATGGCCGTTTCCAAAGCGCGTATCTCGGCG 5084799 36 100.0 36 .................................... AAGGTGAAGTGCTCAAGGTCGGTCAGGACGCTCAGG 5084871 36 100.0 36 .................................... CATACGCTCGGCCAACTCCAGATAGTCCCGGGCGTT 5084943 36 100.0 38 .................................... CGACCCCTTGACCTCGCACCCATAGGCCATGATGTAGG 5085017 36 100.0 37 .................................... ATTAGATGATCCAAGCTCCGGGAACTCCCGAAGCAAC 5085090 36 100.0 38 .................................... GCGGGCGCCGCCTTGGCTTCGTTCGTGAAGTATGGCAG 5085164 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 99 36 99.9 37 GTTTCCGCGGCGAATTCGCCGCGGCCTCATTGAAGC # Left flank : CGAGTTGTTCAACGACTGGGACACCTTCTGGGTGGTACTCGACCATCCGGAGTTGCCGTTGACCAACAACGAAGCCGAGCGCGCCCTGCGCCACTGGGTCATCGCCCGCCGCATCGGCATGGGGACCCGCACCGCGCAGGGCACCCGCGCCTTCGCCCACCTGGCCAGCGTCATCGAGACCTGTCGCAAACGCGCCGTCTCGCCCTGGCCGTATCTGGCCGAGGTAGTCCGCCAGCGCCGCCAAGGGCTTCAGGCCCCGCCGTTGCCCTTACCTGCCATCTGACCGATCGCCGCGACCGGCCGTGATCATAATTGCGGCCCGGCCGCGGCTGGCACGCGTCGCAGCCGGGGTCGCTCCTACGGCGTCGGAGCGGTTCCCGGCCGCGACGGGCCGCCGCAAGGGCTGATGGCCGGATTTATGATCAAGGCCGCCGCGACCCGCCGGGACTCCTTGGCACCCAGCACCCAGGGGGGGCTAAACGGTTACGGTGGCGATCGAA # Right flank : CAACGGGGTTTAAACGGGGTCCCAGGCCGCGGTGTCGGTCGGGGTGCGGGGTGCGGGGTGCTGAACCCTGAACCCTGAACCCTAACCCACGGCCGACTCCAACGCCCGCGTCAGGATCGCCAGCACCTCGGACTGCGCCGCCGGCAGCAGCCCGCCGTCCTGGATCGGCAGATACGGCCGCGGCGGGATATCCCCCCACGGAATCGGCGCCCCGCGGCGGGTCCGGCCCGCGTACCCCTGCGGCATCCCGAACTGCTGCGCCGCCGCGTATACCTTAGATGCGCCCACCCACGCCTTGGTCGCATCCCCCCCATGAGTGATGCTCCCCGCCAGCCCCCCCGACACCTGCAGGATCGGCGCCGCACTCCCGCGCCGCGCCACCGTCACTGGCCGCAGCGCCGCCCACCCCGGCCCGGACGCCTGGAAGGCATCCTCCGTCAGGTTCCCCAGCGTCCGCCCGATGTCCTCCATCACCGGTGCCATGTTCCCCAACTGCGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGCGGCGAATTCGCCGCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.60,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //