Array 1 12529-10059 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWVD01000035.1 Lacticaseibacillus paracasei strain W16 contig00035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 12528 28 100.0 33 ............................ TGATGTTCCGCTCATTGGCTGGTGCATCGACTT 12467 28 100.0 33 ............................ TCATTTGCTTGGCATTAGAGGTAATCTTGGCAT 12406 28 100.0 33 ............................ TGAGCTAGTTAAGGACGACCCAGTGACCATCAA 12345 28 100.0 33 ............................ CACCAATTTTGCCAAGCAAGTACTAGATCATTT 12284 28 100.0 33 ............................ TACCAAGAACGCCCATTGTCAGTGTTCTGTTCT 12223 28 100.0 33 ............................ TTTAACAGCTTTTGTTGCCGCTCATCTTCCAGA 12162 28 100.0 33 ............................ TTGCTCAAGCACGCTTATATGCCGTTTAAAAGG 12101 28 100.0 33 ............................ TATGACGTGGGAGAACATGGGTAAGTCAGCCAA 12040 28 100.0 33 ............................ CAACAGATCAGTCGCTTACAACAGCAGAAGCGA 11979 28 100.0 33 ............................ TACGCGCGCGGAATTGCAGAAGCGGCCTCACAA 11918 28 100.0 33 ............................ CACAGTTTGTAAAATCGTACAAAATAGGCTACT 11857 28 100.0 33 ............................ CAGTAGGTTTATATGGGATTGCTTTTGGGTTAG 11796 28 100.0 33 ............................ CAACCATTGTCGTACTTATCGGTACTGGTTTAA 11735 28 100.0 33 ............................ TCACGTGGAAAAACAGCGACCAGTCGTGACGCT 11674 28 100.0 33 ............................ TCAGACTTAGCCGAATCCACCTTCTTGTCTTTG 11613 28 100.0 33 ............................ TACTAGTCCATATCAGCTGGAGATCAGCGCCTA 11552 28 100.0 33 ............................ CACCTAAAGATGTGGAAGCATGACCATGGAGAC 11491 28 100.0 33 ............................ TGACAGATTACGTGCAGAAAACGATCAATTGAG 11430 28 100.0 33 ............................ CAGTAGTTACTATGCGTCAAACAAGCAGATTTT 11369 28 100.0 33 ............................ TGATTCAGCTTGTGACAAAGCAGAAGAGCTTAG 11308 28 100.0 33 ............................ CAATGGTTTTTGTTAAAGCGTTATGCCTTTGCA 11247 28 100.0 33 ............................ TATCCTCATCACTCATGCCCATCATGCGTTCAA 11186 28 100.0 33 ............................ CTATTTGTGTCCTTGTTGACACCCTCAATATCA 11125 28 100.0 33 ............................ CTACAAAGACAAGTACGCGTTTGCTCGCAAGAT 11064 28 100.0 34 ............................ TACTAAGGGAGACGGCGGTAAGTATGGACATTTG 11002 28 100.0 33 ............................ CACACTTGAACCACCTAGCCCAGAAGAAGCCGA 10941 28 100.0 33 ............................ TGAGATTGTTGAGTGTTTCGATTAGCGCGTCCA 10880 28 100.0 33 ............................ CATTTTGATGCTTATCACTGTCACTGATCAGCT 10819 28 100.0 33 ............................ TGAGTTTCCCGATACTACCTTTGAAACACGGGG 10758 28 100.0 33 ............................ GTTGCTGTGTGTCTGGGTCTAATGTTCGTTGTC 10697 28 100.0 34 ............................ AAATGAGAAATTCTCGGCTGCTATTGAAGTCGAT 10635 28 100.0 33 ............................ CAGTCTTCTGGGGTTGCAAGCAGCGGATCATGG 10574 28 100.0 33 ............................ TGGTCAAGCTCGGCAAGATTTCGCCAGCGTGGG 10513 28 100.0 33 ............................ CAATCGGTGCACGTCCGGCTGTTGGTAAGTCGG 10452 28 100.0 33 ............................ CAAGTACGTCAAGATATTAGTAATCAGACGCAA 10391 28 100.0 33 ............................ CAGTCTTCTGGGGTTGCAAGCAGCGGATCATGG 10330 28 100.0 33 ............................ CAATCGGTGCACGTCCGGCTGTTGGTAAGTCGG 10269 28 100.0 33 ............................ TTGTCGCCATTCTTTGACGGAGTTTGACCCTGA 10208 28 96.4 33 .......G.................... CATGGCTAGCGATGGTATTATTTCTGGGGCTGA 10147 28 96.4 33 .......G.................... TATCAGCCGGAAGCGGTGAAGCTGGCGCGTTTG 10086 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 41 28 99.8 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GAACGAGATGCAATTATTGCCATTGGGGCGGTAAAAGGACCGTCAGTTAACGAAACCGAAAAATTCACTACCTTGGTGAATCCACGAAGGCCGCTTCCATCAACGGTTGCCAAGTTGACGGGATTGTCGGCGGAGGAGTTGGTTGCCAATGGGATCAGTCTGAGCGAGGCAGTGCAGGCCTTACGGGATTTTACCGGCTCGCTCCCTTTAGTCGGATATAATCTGCGTTTCGACATGGGATTTCTTTCGGCAGCGGGTCGTGAAACTGGGTTAACGTCTTTTGGGAATCAGACTTTTGATTTACTACCGCTTGTTAAGAAATCCAGTCGCTTTCTGGATAATTACAAGCTTAGTACAGTGCTGGCACATTATCAGATCGATAACGAGCAACCGCATCACGCGTTGTCTGATGCGACGGCAACAATGGCACTGGCGGACAAACTCATAAAAAAAGGAATCTTAACGATTGGCAAACGTTGATGGGATAGGGATTTTTTAGT # Right flank : CAGTAGCCTCTTGGCTAAAATAGGCTTTTATGGTTCTGGTGCAAATTTTCCTCGCTGACTTGATTTTAGGGTTCTGGTGCAAAGTTTACTCAGGGAGAGTGCATCCTGTATCATGAATTGAAACTGGAGGTTTTCAGATGACTGATCATTTTAAAGGACGGCAATTCAATCAATCAGTGATTACTTTTGCCGTAGGCTACTACTTGCGTTACAACATCAGTTATCGAGATCTAGTTGAAATGATGCGCGACCGTGGTATTTTCGTGCATCACACAACCCTCATGCGTTGGGTACAACATTACTCACCGATTATGCGGGCTCTATGGCGTAAGCGCCATCGGCGCACTTCCAAAAGTTGGCGTATGGATGAGACCTATATCAAGATCAAAGGTCAATGGAATTACCTCTACCGTGCCATTGATGATCAAGGTCTTACGCTTGATTTTCAACTGCGCAAGAAGCGTGACTTTAACTCGGCCTATCATTTTCTCAAACGCTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //