Array 1 6824-4341 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXKU010000011.1 Acinetobacter baumannii strain AB4353 NODE_11_length_147338_cov_8.262084_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6823 28 100.0 32 ............................ GGACTCATTGTGCTGGAACCATTCTCGATACT 6763 28 100.0 32 ............................ ACTTCGTCACGGATCTTTTGTGCTAATAATTT 6703 28 100.0 32 ............................ AGTGTCTTCACAATCGCACTGTGCCTTGCTTT 6643 28 100.0 32 ............................ ACAAACCATTTATGATAGTAATGATCCTAAAA 6583 28 100.0 32 ............................ TGAAGCTAAGCAATTTAAGAAATGGGTTACTT 6523 28 100.0 32 ............................ TTTTGCAGTAGCTGCTCCTACAACTCAAGCAA 6463 28 100.0 32 ............................ TTGTCGCGGGTCGCCCATGTTTTCAATGGCCT 6403 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 6343 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 6283 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 6223 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 6163 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 6103 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 6043 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 5983 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 5923 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 5863 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 5803 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 5743 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 5683 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 5623 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 5563 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 5503 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 5443 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 5383 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 5323 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 5263 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 5203 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 5143 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 5083 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 5023 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 4963 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 4903 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 4843 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 4783 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 4723 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 4663 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 4603 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 4543 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 4488 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 4428 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 4367 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 42 28 98.6 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11914-17103 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXKU010000011.1 Acinetobacter baumannii strain AB4353 NODE_11_length_147338_cov_8.262084_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 11914 28 100.0 32 ............................ TCTGTCATGCTGCAAACCCTCCGTTATGTTTA 11974 28 100.0 32 ............................ CTAACGCTTCGCCCCAAATCTTTGCACCATTC 12034 28 100.0 32 ............................ AGTAACATCACCAGTTGTTGGGTTTTGGTTGC 12094 28 100.0 32 ............................ TGTTGCAGGTGGGCTAGACAGTTTGATAATAA 12154 28 100.0 32 ............................ AATTTCCCCAGATCAAGGTCTTTTAGCTTCTC 12214 28 100.0 32 ............................ AACCATTTCGTATTGCGGGATACATAGAATCA 12274 28 100.0 32 ............................ ATAGAGAATCTATTAATCGCTTTGAAGAGTTT 12334 28 100.0 32 ............................ ACCCATCAAATGAATTACGTTTTTTTGTTTAA 12394 28 100.0 32 ............................ GCGATCCTCAGGTGTTTCAAAACCACATTCAC 12454 28 100.0 32 ............................ GTGAGTCTGAGAAAGGCAAGCGCCCTAAAGCA 12514 28 100.0 32 ............................ TCAGCTATCACAAAAGTCGAGCAAGTATTGGC 12574 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 12634 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 12694 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 12754 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 12814 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 12874 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 12934 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 12994 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 13054 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 13114 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 13174 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 13234 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 13294 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 13354 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 13414 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 13474 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 13534 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 13596 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 13656 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 13716 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 13776 28 100.0 32 ............................ ATTATCAGATAAGCCTTTTATGAATGATCGTT 13836 28 100.0 32 ............................ ATTAGCTATTAGCTTTTTGGCAACAACAACAG 13896 28 100.0 32 ............................ AGTTCATGAAAACAGCTTTAAAAAGAAAGCAC 13956 28 100.0 32 ............................ TCCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 14016 28 100.0 32 ............................ TTGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 14076 28 100.0 32 ............................ TGGTACGACAACTACGAAAAGCTGAGCAAAGT 14136 28 100.0 32 ............................ TCAACTTAAATGGATGCTCCCCGCGGTGAATT 14196 28 100.0 32 ............................ TTGATTGCTAGACGGATTTTTAGGCAGATCAT 14256 28 100.0 32 ............................ GAGTTTAATGCGCTATATGGCGACGAGGATTT 14316 28 100.0 32 ............................ CATGCAATCGCGTTGATTACCGCAGCTTCGAA 14376 28 100.0 32 ............................ ATGAGCCGCAACCATACGGTCTATGACTTCCA 14436 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 14496 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 14556 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 14616 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 14676 28 89.3 32 ....T.......AT.............. ATATACAGCACCGCTTAGTGCGACGCGGTCAT 14736 28 89.3 32 ....T.......AT.............. GCCCACAGGTTGAGCATCAACGGCCATCGAGA 14796 28 89.3 32 ....T.......AT.............. ATCATAGAGCTCACTTTGTCGTTGAGCCTGCA 14856 28 89.3 32 ....T.......AT.............. AGAAGGCCCGTAATTTAACTGTAAGCCGTGGT 14916 28 89.3 32 ....T.......AT.............. TCTTCCTGAGTTTTAATCCCATTTGCCTTACA 14976 28 85.7 32 ....T.T.....AT.............. CATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 15036 28 89.3 32 ....T.......AT.............. TTCAGGGAATTATCGTGAAACTTTCATTGACT 15096 28 89.3 32 ....T.......AT.............. TGCACCAGCTGCTGGCTGGTTGAAATCTGCAA 15156 28 89.3 32 ....T.......AT.............. AGAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 15216 28 89.3 32 ....T.......AT.............. TGTTTCAAAAGCTACACCATCAAAACCATTGC 15276 28 89.3 32 ....T.......AT.............. TATTTAAGTAATAAGTTTAATAACGACCTAGT 15336 28 89.3 32 ....T.......AT.............. AACACGTTCTCTATATCGCTGTTTGCGGTCAT 15396 28 89.3 32 ....T.......AT.............. TTCAGTTGGATATGCCTTTGATACCAAGAAAC 15456 28 89.3 32 ....T.......AT.............. GCCTGCAGACACGGATTTACGCAGCTGATCGA 15516 28 85.7 32 ....T.......AT...........C.. TAACCAAACTATGTCATCGATCGGAGATTTCA 15576 28 89.3 32 ....T.......AT.............. TTAAAATAAATGCCTGTGGTTTTTTCTTAACT 15636 28 89.3 32 ....T.......AT.............. AGTTTCCGAAGTTGAATTACACTCGCCAAGTT 15696 28 89.3 32 ....T.......AT.............. TAACACAGTGATTTGATTACCTTGAGCAACCC 15756 28 89.3 32 ....T.......AT.............. ATCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 15816 28 89.3 32 ....T.......AT.............. TCATCCACCTTTGATGAAACGGATCCACGCAA 15876 28 89.3 32 ....T.......AT.............. TCTTGTGTGACGGCCTCCACTCCAGATCCCGC 15936 28 89.3 32 ....T.......AT.............. TTAAGCTTCAAAAATAGCCATTGATTATAAAA 15996 28 89.3 32 ....T.......AT.............. TGACAACTTTCCACGGCAATCAGGGCTTTCCA 16056 28 89.3 32 ....T.......AT.............. TAAAGATGCACGTGGCCTAATGCAAGTTATTC 16116 28 89.3 32 ....T.......AT.............. TTTAAAATTAGGTGCTGAGTTACCACGGCTCA 16176 28 89.3 32 ....T.......AT.............. TAAACCAAGAACTTGAAGATTTTGATGCTTAT 16236 28 89.3 32 ....T.......AT.............. TAAAAATAGTGTGTTAATTATTTATGATGAAA 16296 28 89.3 32 ....T.......AT.............. CGTATACATGCACATCAATACGATATCCCGAT 16356 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 16416 28 89.3 32 ....T.......AT.............. TGCAGCTACTCGACATGTTGGTAGGGCAGATG 16476 28 89.3 32 ....T.......AT.............. CAGTCGGCTGGTGCTAATTGAATAAAATCGTT 16536 28 89.3 32 ....T.......AT.............. AGATTGAGGCGATTTTTATCGCGGACATTGCC 16596 28 89.3 32 ....T.......AT.............. CAGTCCCCGCTTTGAAGCATTCCCATCAGTAC 16656 28 89.3 32 ....T.......AT.............. TCACAGCTATCGTCTGGCTGCCGTCGCGTAGA 16716 28 85.7 32 A...T.......AT.............. TTATTATTAAACGGGAAAAGTATATTCTTGCT 16776 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 16836 28 89.3 32 ....T.......AT.............. ATCATCAATAAGTTGGCCTTGATTTAAATAGT 16896 28 89.3 32 ....T.......AT.............. AGATACAAACGAGTTCGCATCTCGACCAGAAG 16956 28 89.3 32 ....T.......AT.............. ATTATCCAGATAAAACCATATCTACAAAGTGG 17016 28 89.3 32 ....T.......AT.............. TCAACCTGAACACAGACATACATGTTCTATTG 17076 28 78.6 0 ...GC.......AT..........AT.. | ========== ====== ====== ====== ============================ ================================== ================== 87 28 94.7 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : ATTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACAAAAATCCTAAATAATTGATTTTATAATTGCTTTTTCGGCATATAACATGCTGGTATAACTCATGTATAACATTTAATTTTGATTAAGTATGATTAACAACAGTTTCTTTTTTGTTCAAGTCCGACTATAGGAGTTGAACTCATTTTGAAAAATTCTAGGCTCTTCCCACTTTTATTTTAGCTTACTATAAAGGTCAATATAAAAATTATGATAGAAACGCGTTCTCTTTCTCTTAATTTTAGGGCTTACAACTGAGCTGTATGTAACCGAAGTTTCCTCTATTTCTTCCTCAATTAATCCTACAACTTCTAAATCTTTGAAGTCACTAACTAAAAGATTTTCAAATTCCCAATATTTGTTGTAATCAGTGGCATCTTTTGGCAATCCTTCACAAGGTATGGATTGTCCGCGGAGCC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : GTTCTTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //