Array 1 965960-967390 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007540.2 Salmonella enterica subsp. enterica serovar Montevideo str. CDC 86-0391 isolate B94-007410 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 965960 29 100.0 32 ............................. CCAAATGGCTAAGTGGGGCGTTGGTGGGCGAA 966021 29 100.0 32 ............................. GCCGCTCCGATACGCATTGCGGCGGGGATAAA 966082 29 100.0 32 ............................. GCAAAATAGTCACCTTGCAGGCTGATGTCAGT 966143 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 966204 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 966265 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 966326 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 966387 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 966448 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 966509 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 966570 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 966631 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 966692 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 966753 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 966814 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 966875 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 966936 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 966997 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 967058 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 967119 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 967180 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 967241 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 967302 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 967363 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 984153-986317 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007540.2 Salmonella enterica subsp. enterica serovar Montevideo str. CDC 86-0391 isolate B94-007410 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 984153 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 984214 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 984275 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 984336 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 984397 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 984458 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 984519 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 984580 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 984641 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 984702 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 984763 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 984824 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 984885 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 984946 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 985007 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 985068 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 985129 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 985190 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 985251 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 985312 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 985373 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 985434 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 985495 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 985556 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 985617 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 985678 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 985739 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 985800 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 985861 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 985922 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 985983 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 986044 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 986105 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 986166 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 986227 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 986288 29 96.6 0 ............T................ | A [986315] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //