Array 1 266682-265474 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUMH01000005.1 Clostridioides difficile strain VRECD0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 266681 29 100.0 39 ............................. ATCATAAGAACCTGGAGTGTAGGGCAAATCATAAGAAAC 266613 29 100.0 36 ............................. AAGGCTCAAAAAGATTTTTATAGAAAAATGAAAAAG 266548 29 100.0 37 ............................. ATAGCTCCCAGGCTTGCGCCAATTCCAGCTATCGCAA 266482 29 100.0 36 ............................. ATGTTTGGGCTAATAGATGGTGACGCTGTCAATTAT 266417 29 100.0 37 ............................. ATGTATCTATAATCTCAATTAAATCCTTTAAATTCCT 266351 29 100.0 37 ............................. GAAGTTCAGAACATAATCTAACACTTTTAGGGTTTTT 266285 29 100.0 36 ............................. GACTCTGCCATCCCTGTAACGAACAGTCTTACAGCA 266220 29 100.0 37 ............................. TGGGATATATATTCTCTTTTTATTGGTTTTGATGTAG 266154 29 100.0 37 ............................. CTTTCAGTAGTAGTCCACATTGATTATAAAAAAGCAC 266088 29 100.0 36 ............................. GTTGTTTCTGTTAAACCTTCTTCTATTTCTACTGAC 266023 29 100.0 38 ............................. TGGCATACAATACATAATTTTATGTCTTTTCTACTGAC 265956 29 100.0 38 ............................. ACAAAAATAGTAGATTACCTTTTTCAAGCCGCCTACTT 265889 29 100.0 36 ............................. AAGATTACTGGTAAGGGGCAAATATACTTTATCAAT 265824 29 100.0 34 ............................. TGTTTTTTTCTCTTTACAGGGTTAGGCAGATTCA 265761 29 100.0 36 ............................. TCTAAAAGGTCACATATATTTATTAAATCTGTTGCA 265696 29 100.0 36 ............................. ACTTGTCTAGCTATTCAGTTTTTATTTTATCACCTG 265631 29 82.8 36 ................A.....GA...GT AGAATATTAGCAATATAAACGAGTATTTAGAAACTT 265566 29 79.3 35 ............TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAAACATCA 265502 29 72.4 0 ACC.............A.CA...C....T | ========== ====== ====== ====== ============================= ======================================= ================== 19 29 96.6 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAAATCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGTAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGAAACATAAGGGATTGAAGGTGTATGATAACTATTATCGATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATTAAACAATAAAGACATAAATAAAATAATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAGATAACTATAATGCTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATATAGGTATCGGAGGTAAACTTTTAGATTACGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGAGTACAT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 111585-112605 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUMH01000001.1 Clostridioides difficile strain VRECD0010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 111585 29 100.0 36 ............................. ATTTGAACATTTGTTACAGCATTAGAGATATTAATT 111650 29 100.0 37 ............................. GCAAAGTTCAAAGATTGGCTAAATAGCATCATTTCAA 111716 29 100.0 38 ............................. GAAAGTTCTATTCTCTTTTTTTACGTCTATGTATTTGC 111783 29 100.0 38 ............................. TTATATTTTTCATAAGTAGGAACGAGTATTCTAAGCGG 111850 29 100.0 37 ............................. ATAATCAAAAGCAACATCATAATCACGTATATTATCT 111916 29 100.0 37 ............................. TCTATAGATTATGGTGGCTTATTTAATCCTATTGCAA 111982 29 100.0 36 ............................. TGATGTTCATAACCAACATACTTCGCTTCAATAGAA 112047 29 100.0 37 ............................. AATATAAATAAATATCCTACTCAAAAGATTGTTGCTA 112113 29 100.0 37 ............................. TTTAGTATAGATTCTAATGTATACTATTCAACTAAAA 112179 29 100.0 36 ............................. TAAAAAACCTCCTAATATACAAATTTTTACATAATT 112244 29 100.0 38 ............................. TTTTGTTTTCAAACGTTACTTTGCATGTCTTTGACATG 112311 29 96.6 37 ............T................ AACATAAAATAGATAGGTATAGCTAAATCAGTGTCAA 112377 29 100.0 38 ............................. TTAGTTCCACTATAAAAATATATCATCAAAAAAACCTC 112444 29 100.0 37 ............................. GTTATATATAATCCAAATCAAGAATTATCAGATTATA 112510 29 100.0 38 ............................. TTTATAACCTTTAATTACACCTCCCATATCACCACCAC 112577 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ====================================== ================== 16 29 99.6 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TACTATTATATATAACTGAATATCTAAGTGACATTTAAGAAAAATACGATACTTACTGACATAAAACTGAACATTATTTAAAGATAACCTTGATTATATTTTCAGAAGCTTCTTTATCCATATCATCTAAAATAAGAAAATATCTATTCATAGTTATTTTTATATCAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAACTATTAGAATAGATAATATAGTAAGCATTTACAGATATGCAAGTGTTCTTAAATTGATAAATTATTCCATTTTATTTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATATAGCATTTTTTCCCTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAGTAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGACCTTTGAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAAATTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 397566-397133 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUMH01000001.1 Clostridioides difficile strain VRECD0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================ ================== 397565 29 69.0 176 TGAAA.......T...A..T......T.. TAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGACAAATTGAGGTTTAACAGTTGAAATATAAGGCATTGAGAATATATGATAAGTATTATCAATTGCACTATTGCGCGTTTACTGCAATTTTAAGAGTATTGTATATGTGTAAACATTGGAGATGCTAAGTTTATTTTGGG A [397541] 397359 29 100.0 36 ............................. GAAACTCTGAATCATCTACTTTGACATTATCAATAG 397294 29 100.0 39 ............................. CTGCTACTGCTCCCTAATACTTTAATTTTCATCTTTAAA 397226 29 100.0 36 ............................. ATTTCTAACAGTATATGTGAAATGTATACTTTACTT 397161 29 96.6 0 T............................ | ========== ====== ====== ====== ============================= ================================================================================================================================================================================ ================== 5 29 93.1 72 GTTTTATATTAACTATGTGGTATGTAAAA # Left flank : ACTAAAATATTTTGAAATTCTTCAAGATTTTCTATACTAATTTTTTTTTTACTATCTTTACTTAATAAACTATATGCTGTTTCATAGTCACCAGAGTTCATCTTATCAATATATTTTTTTGCAACTTCACTGGCACTTTCTCTTGGTGAACATCCTGTCATTAATATCACAATTAATAATGTTAAGAGTAAAGTTATGCTTTTAATAATATTCATAATACAATCACCTATAATTAAATTTTTATTAATTATATTCTAGCATCAAATATTGAATAAGTCATCTTATTTAAAATACAATAAATAGTATTTTGCTCAAATTTTCAAATGCTTCTCTGCCCATCTCTTCTAAAACCTGAGAGTATCTATTCATAGTTATTTTTATATCTGTATGACCTAATCTTTCTGAAATAGTTTTTATATTAGTTCCAGAAAGAAACATTAAAGTTGCATTATTATAGAATTTAAACATAATTAAATGTAAAAATACAGTTAAAAATTAAT # Right flank : TTTTTATTACATTAAAAGCAATTCTCCTAAAAACACAAATAATTGTCACAACACACAGTCCTCATATTTTACAAATTGATTCTAAAGAAGAAATAATTGTGTTAGATATGGATGAAAGTGGTAATGTATATAAAAAAGAGTTAGAACTTGGAGAATATGTGGTATTAGGCTGGACCAATGAAGAAATATTAAAAGCTGTTATGGGGGTAGAACATAATTTTTTAAAATTATATCTGAAAGTGATTAGAAATTTTGAAGATGCTGAAAAAGTAAAAAGAATACAACTCTGTTATGTCAACATTTTTGTTAACAGATTTAGATTATAAATACATAAAAGAAATGATGTTAAAGTTTAATTTATGGGATGATGAATTAAGTGAATTAGAAAGTACAGTAAAAGAAATAATGTTAGATTCGGAATGAAATATATATTAAAATAACTAGATACAATTTGGATAGATAATGTTATGATTTATTTAAGAAAATGGCACAGTATTTTA # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-3, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 977629-976809 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUMH01000001.1 Clostridioides difficile strain VRECD0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 977628 29 100.0 37 ............................. TCTTCATATGCAAAAGCTCTTGCCTCAAATAGATTTC 977562 29 100.0 35 ............................. AGTAATCTTAATAATTCCAATCTATCTTGTTCATT 977498 29 100.0 37 ............................. CTAAGCATTGAAATAACTAATGTTCAGAGGTTTTATC 977432 29 100.0 37 ............................. TTTAGTACTGTAAAACCTTGTTTTAAACCATCAGCGC 977366 29 100.0 38 ............................. TTCCTCATCGTCAACAGTAAACATAAAAGACATTCCAG 977299 29 100.0 38 ............................. TTCAGAATATTTAGCTCCTGCGCCTATATCGTCTGAAT 977232 29 100.0 37 ............................. TCATTAATTTCTATATCATATAATTCCTCGACAATAG 977166 29 100.0 37 ............................. AAATATGGGTCTACAAGACACTTCTAACTCTGTAACT 977100 29 100.0 36 ............................. GTGGAGTTTATTGTAGTGTTGGCTACGCTAGTAGAA 977035 29 100.0 37 ............................. ATTTCTTTGTTTATTGCTTCCTTAGAAATTTCATCCA 976969 29 100.0 37 ............................. TGGTCCTCACCTACTCTTTTTTAGCTTTTGGAATTGT 976903 29 100.0 37 ............................. TGAACCCATTTTCAATCTTTTCTTTTGTTTCTCCATT 976837 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 100.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCGACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAGGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCATAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAAAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATGTGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : TGTATCCAAAAAATTACAATAATCATACGAACTGCTAATATAAGCAGTCAATATATGTGTACATTTATCCATTTTATCTCTAAACATATAAATTATCATGCCCCTAAAAAACTTTCATAAAAACAAAAAGAACAATATCTCTTTGGCAACTGGCTGACATAACTCATAATATATTTATATAAGTCTTAGTCCCTATAGCTTTGCGGCACTAGATTTCTCTAGTTTTGCCGATTTAGTTTTATTCTATAACTAAATAATACAATAGAATTAGTTATTATTCAACAAGATTGTTTGAAAATTGAATAAATTTATAGGCATGAACGTAATTTCACGCTTAAAAAACAGACTAAATACGTAGAATATATAGAAAAATTTACCTATAGTTTTTGTGATAAAAAGCTCCTATTATTAATTTAAGCTAGATAAGTTTGAGGAAGTGACATAAATTGAAAGAAGGAATATATTATGTTGAATAAAAAATTGCCAGATGCAGAATTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 67390-66439 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUMH01000003.1 Clostridioides difficile strain VRECD0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 67389 29 100.0 36 ............................. CTGAAGAAAACATTCCTAGACTGGTTTCTGTAGAAG 67324 29 100.0 37 ............................. TTAAAATTATTTCAAATGCTTTGTTTCTATCTTGGTA 67258 29 100.0 36 ............................. GGAAGTACCTTTTTTGGTATTTTAAAAATGGTAATG 67193 29 100.0 36 ............................. AATGTAGGTGCATGGTTTAATTCTACTTTTAGTTTA 67128 29 100.0 38 ............................. TTTTATAAGTCAAAGTAAGTCTATAAACTTCTAGTTTC 67061 29 100.0 37 ............................. GTATTATTAGAAATGGAAAAAGTATTTTTAATTGCAA 66995 29 100.0 37 ............................. TGTTTCTAGCTGTTACATCAGATATTTTCAAGTACTC 66929 29 100.0 37 ............................. TCATTTATTATTCTTTCTGATAATATTCTTACAACTA 66863 29 100.0 37 ............................. TTAAATAATTTTCCATAATCTCTAACTATACTTTCTA 66797 29 100.0 38 ............................. AATATCGGAATTGTTTTTATATCACTAATATTACCTAT 66730 29 100.0 37 ............................. TTATTTTTTATATCAAATCCAACTCTGGTCATTGCTG 66664 29 100.0 35 ............................. CTTAGAAAAGCAGATAAAATAAATCTTTCTCCAAG 66600 29 100.0 37 ............................. GATATTATAAAAGATGGTTGGGTGTTAACAATTCCTT 66534 29 96.6 38 .......................T..... CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAC 66467 29 82.8 0 ........C........CA....A...T. | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 98.6 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGATAACCATAATAAAAATAGTATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGTGAATACAAAAGTTTTTATCTAAACTATGCTTGTTCAGGTAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAAAATGACATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAGCTTTAAGTTATAGAATTTAAATCCATTGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGATAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAGTCAAAAGGTAATATAGAAATCTTATCACCTTTTTTATTATTAATTTTGTCAGTGTTTTATTATAAATAGCTTATATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGTTAATGATGTTATTGCAGTATCCAATCTTATTATTTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTTCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATACCTTATTGTAGCACCTATTACAACTTCCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTTATGATGAGAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 176524-175835 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUMH01000003.1 Clostridioides difficile strain VRECD0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 176523 29 100.0 39 ............................. ATGCTTTCCGCTGTGCTTCTTATAGCATTTTTAGCATTT 176455 29 100.0 38 ............................. AGGGTGAGGCTCTAATCAAAAAACAAAAAATAAATTTA 176388 29 100.0 36 ............................. CCTATAATTGGTACACAAGCTCACAGTTGGGTACAA 176323 29 100.0 36 ............................. TTTACAGGAAATGACAAGTTAGAAACAACTAAGAAT 176258 29 100.0 34 ............................. TCTTTTAATACTTTTATTTTTTCTTCATAACTTA 176195 29 100.0 37 ............................. TATACTGAAGTGCATTAGCAGAATTAGCAGCAGTTTT 176129 29 100.0 38 ............................. AATTCATAAACAATAATTTCTCTCATATTGAAAATATC 176062 29 100.0 38 ............................. TCTGATTTCCCATCATACAATGTTATTGATGAATACAT 175995 29 100.0 37 ............................. GAAACAAATATATCAACATACATATCTTGTTGTATTA 175929 29 100.0 37 ............................. AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 175863 29 72.4 0 ......C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ======================================= ================== 11 29 97.5 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TTAAATATCTAGGGTTTTATTTGACGTGATCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATGAATATAATAAAAAGAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTACATGTTTTAACTGTATAAAACAGTGGGTATAGTTCAGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCAATCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATACTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGTATATGATAAGCTTTATCATTTGCACTACTAATGGTTCACTGCAAATTTAAGAGAGTTGAACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAAATGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTATAAAAATGGGCAGTATCAATAAATATATTGTCTAAATTTTTTTAGGAACTAGTTGACTAGCGATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTAGCCATATAAATAGCTTTATTATTCGTATGCACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAAAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 401697-401210 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUMH01000003.1 Clostridioides difficile strain VRECD0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 401696 29 100.0 37 ............................. CTTTTAGCTGGTCTATTTTCTGCTGTGTTCTCTCTTG 401630 29 100.0 37 ............................. AAAACAAAAATTAAATAAATAAAATATTTAAAAATTC 401564 29 100.0 36 ............................. TCTCACTTCTTAAAACAAGTGTTACTAAGAATAAGA 401499 29 100.0 37 ............................. TTTTTAATCACATTTGGATTTTTACCAATGACTTTTT 401433 29 100.0 36 ............................. AAGATATTTAATTCTTTGACTTACACTCATATATAA 401368 29 100.0 36 ............................. ATATTTATCATTCCAACTACGAGGATTATAAAGCAA 401303 29 100.0 36 ............................. AACAAAAAAGATACATCTGTAACTAATTTTTATACT 401238 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 99.6 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : GCTATTAACTTATGAAATATCTGTAAATGAGTAGATATTTCATAAGTTAATATTTATTGTTTGTATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAATTGTAGCAAGAATAATAATCGAAAGCAACAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGGATGATTTAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTATACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTACTCGTGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : ACAGATATAATATCAAAATAAGGTTAGGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTCAACTCTCTTAAACTATTTCCATATCCTTTAGTAGATACTTTTGTTGTTTTTTAATCTTTAGTAATTTGTTCTTGAGTGAACCGCTTATTTTTTCTAAATTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCATCACATGTATAATACAATTAATTCAGTTTCAATTGTCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTAGATAAACCAAAAATTTTAGCAAATATTATTAACACACGTCCCTTATTGCTCTTTCACCAGACTCTATTCTATTCATAACACTTATATTTATATTTGTTTTTTTAAACAATTCTTTTTGAGACCTACTCATATTTTCCCTAATATATTTAATCCTTTGAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //