Array 1 117931-119279 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPE010000002.1 Pseudomonas cichorii strain LJ1 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 117931 28 100.0 32 ............................ ACCACCCCACGTGATGTCTCAAAAGCCTTTGC 117991 28 100.0 32 ............................ TGCGACAACCCCTGCCCCGAGCAATGTCGTTT 118051 28 100.0 32 ............................ GAACAGGTCCACGTTCACGAGCTGAAGTATCT 118111 28 100.0 32 ............................ AGATTGTCTACGCTCTGCGCCTGAACTTCTGT 118171 28 100.0 32 ............................ AAATCCAATTGGTCGATTCCACGATATGCAGG 118231 28 100.0 32 ............................ GATCGATCGGCAAAGCCCCGCGATGATGAGCA 118291 28 100.0 32 ............................ TAGCGTGTATGCGTTATGCCCGCTCACAGAGC 118351 28 100.0 32 ............................ CAGGTAAGCACAATGCATCAGTTAGCAAGACG 118411 28 100.0 32 ............................ CCTATGAACCCGACGAATTGCGCATTAGGATC 118471 28 100.0 32 ............................ CCTATGAACCCGACGAATTGCGCATTAGGATC 118531 28 100.0 32 ............................ TAAGTGATGCGCAATTATTACCGCTCGGTAAA 118591 28 100.0 32 ............................ AGCATCCATTCGGTGCGGGAAGTGGCCCAGTC 118651 28 100.0 32 ............................ AGGACGTACGCTTTTCCTCGCCTACCATGTAC 118711 28 100.0 32 ............................ TGAAACGCCGCCGTTCGCGCCAGCAAATTCTG 118771 28 100.0 32 ............................ AAGAACATCATCCGGGGCTTAGTCGAGTAGGC 118831 28 100.0 32 ............................ ACCGCGAGCCATGGGCAACACCAGATCAGGTA 118891 28 100.0 33 ............................ GATCTGAATGCGCTTGCCCAGGGCAACATCCAC 118952 28 100.0 32 ............................ ATTGCCCGCGAACGAGAATTTCGCCGCATCCA 119012 28 100.0 32 ............................ TCGGGCCGCTGGCCGCGCCGGTCGTAGAGCCG 119072 28 100.0 32 ............................ CTTGCGAGGACAGGTTTTTGCGCTCCTGATGC 119132 28 96.4 31 ............G............... CTACGGGCGTTAAGACCCGGATAAATCGCAC 119191 28 89.3 31 ...........C.C.......C...... GATCACTTGAGCATTGAGCAAAGCACTGAGC C [119217] 119251 28 89.3 0 ........T......A........A... | A [119263] ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.9 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : AAGGTGGCCAGAGCATCAACCGCTTAAATGATGGGTTTCAGGGTAGTAGAGAGTGGGGGTGTTTGCTGCCGAGAGAGCCGACTGATTGGGTAGGATTTATCCGCGAGACGTCATTGCAGACGATGCATTTTTGAGAGCTGAGTGATTCATCCCGGGCTCACACAACCTTGTGGGAGGGGCCTTGGCCGCGACATCCTTCAGACAAAATATGTCAGGAAATGGAGCTTTTCCAAGCCGTCATGTCGCAATTTCCGGTTTCTAGCGACATGTTATGAGGTCATGTCGCTGGCGACGACATATCAAAAAGTACGGCGCTGTCTTGCTGCGGGTGAGCACCTGTATACGGCGGACAGGAATGAACCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAAAGCTCGATAAAAAAAGGGTTAAAACGGCTGTTGGCGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGCAGAGTGTCTA # Right flank : AAACAAAGCCCTTGTAGCTAGCTCACCTACAAGGGCTTCAATCCATTGCCAAAAGAACATCAAAACCAGGGAACAGTAGCCGTAGCACTCAACCCATAGCTATTGAAGGTCCCATCCTGGGCGCTGCTCTGTATCGGCTCATGCCGGATGAACAGCAGGAACGTCTGACCATTGGTACGGCTGCGCATCTGGACGAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATACGTTCGCGGGCTTGTTCTTCCGTGAGGCCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACCTGCACGCGGCTGACGCGCCGATGCTGTGCGTCAGTGGGGATCGGGCTCAGTTCGCCTACTCGCACATGGTCACGCATGCCCGTCAGCCAGCTCTGGGCCATCAGGGCATCCAGCGCTTGCGCACTGCCGTGCAAGCGCAGGCGGTCGCCCAGGCCGGTAGCCCTGCCGCTGATAGCGGGGAAGCTGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 128946-127957 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPE010000002.1 Pseudomonas cichorii strain LJ1 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 128945 28 100.0 32 ............................ ATGAACGATGACCACTTCTCCTTGAGTCGCTG 128885 28 100.0 32 ............................ TTCAGCTCTTCGCTTTCGAGGACGCTTGGCAG 128825 28 100.0 32 ............................ GATGATGGCTTTGGAACAAGCAGACGAATACG 128765 28 100.0 32 ............................ AGCATACCGATCTGAACCTAGTGCTTGAGCCC 128705 28 100.0 32 ............................ TCCATTCGCCCGCCAATGCCATATGCCGAACG 128645 28 100.0 32 ............................ ACAAACTTGAAGGCATAACCGCCGCCACCGGC 128585 28 100.0 32 ............................ CAGTGTCACTAGGCATGAGGCCGACTGCTTTC 128525 28 100.0 32 ............................ TGAGCGGGGGCTTCAAGCCTGTAGGGTACTCA 128465 28 100.0 31 ............................ GCAACGCTTGCTCAAGCCCTTTCGTCGAAGA 128406 28 96.4 32 ...........................A ATTTCCCGTACCACTGTCTGCATCACCTCCTT 128346 28 96.4 32 ...........................A TAAAAACTGGAGCAGCACATGAGCACAGCAGA 128286 28 96.4 33 ...........................A TGCTGGCAGATCCAAGCGGTGGCTGCGTTCATA 128225 28 96.4 32 ...........................A TTACAAAACTTGGCTGGCCGAGATACGCCGCC 128165 28 92.9 33 ......................T....A AGTGGCGATCCAGCCGGGCATTGCCTGTATGCT 128104 28 89.3 32 ............C.........T....A ATATCGCCATCTTCCCAGTAATAGAAATCCAC 128044 28 85.7 32 ...........CA..A...........A TACGACCCGGTCATTAATGGTCATCTGCTCTC 127984 28 75.0 0 A..A.......AAC..........C..A | ========== ====== ====== ====== ============================ ================================= ================== 17 28 95.8 32 CTTCACTGCCGTGTAGGCAGCTCAGAAT # Left flank : GTCAAGAAAGGGTTCATTCTTGGCCACCGTAGACAGATATTCCCGGGGAGTGCGACAGCGCCGTATTTTTTGATAAATCACTTTGTGCAGGGCAGCTTGCTGGCGACTTCAATATACAGCCGCAGAATATCTGCCGCTTTTCAGATTTTTCGCCAGCAAGCTGCCTCCCACAAGTGTTGTGTATGCCTTAACTGATCGGCATTACTCCGTAGCGACTTCAGTAACGAAGACGGTGCTCAACCGACTCGGATGTACCACCAGTGGGAGGGGGCTTGCCCGCGACAATGCAAGGGACAATATCTACCGATGCGTGCCCGTATCTACAGCGAGCAATAGACGCACAAAAACATTTTCCGGAATGCTGATTCTGACCCTATTTTTTCACCCAATATGCGCCCCTTTAAAATCAATCACTTACATATCTGATGAAAAAAAGGGGTAAAACGGCTGCTGGTGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGGAGAGTGTCTA # Right flank : CACTCAAATCAACCACCCAAAAAACCCATAACCAACTGATCTACATAAATTTAAATCCAAACCTGCAGAAGCACGCCTGCCCACAACAACCCTTCTGTAATCCACTCCCTACAAGAACCGCAGACTCATCTTTCTGACTCACGACCATCCCCAACCTCAAAAAACCTAAAGCACCGCCTTACGCTTTCGGCTATATACATTCCCTCTCCCCGGCCAAGTGCCATTACTGGTTCGATCATGGATGACATCAGTTCTTCGGATCTCAAGACGATCCTGCATTCAAAACGCGCGAATATTTATTATCTGCAGCATTGCCGGGTATTGGTGAATGGCGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACGGGGACTTCGGTCACTCAGGCGGCGATGCGTGAGTTGGCCAAGGCGGGTGTGCTGGTGGGCTTTTGCGGCGGTGGCGG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 129574-129841 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPE010000002.1 Pseudomonas cichorii strain LJ1 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 129574 28 100.0 32 ............................ CGCCCAAGCCCAGCATCGCGCTGGGCCGAGGC 129634 28 100.0 32 ............................ ATCATGCCCAATCGAGCGAACTCGATGCCCCG 129694 28 100.0 32 ............................ CATGAGTGGCGAGATCACAGCCCAGTACTCAC 129754 28 100.0 32 ............................ TACGGCCGAGATCGTTCGCACCGTCATGGGCA 129814 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 CTTCACTGCCGTGTAGGCAGCTCAGAGA # Left flank : GTCAGAATCAGCATTCCGGAAAATGTTTTTGTGCGTCTATTGCTCGCTGTAGATACGGGCACGCATCGGTAGATATTGTCCCTTGCATTGTCGCGGGCAAGCCCCCTCCCACTGGTGGTACATCCGAGTCGGTTGAGCACCGTCTTCGTTACTGAAGTCGCTACGGAGTAATGCCGATCAGTTAAGGCATACACAACACTTGTGGGAGGCAGCTTGCTGGCGAAAAATCTGAAAAGCGGCAGATATTCTGCGGCTGTATATTGAAGTCGCCAGCAAGCTGCCCTGCACAAAGTGATTTATCAAAAAATACGGCGCTGTCGCACTCCCCGGGAATATCTGTCTACGGTGGCCAAGAATGAACCCTTTCTTGACCCTCTTTTTTTCACTATCGGTTCGTCTTTTAAAAATCAATGATTTACAGATATCGATAAAAAAAGGGGTAAACGGCTGCTGGTGCATATTTTTCTTTGAGAACGGAGGGTTATCGAGGAGAGTGTCTA # Right flank : AAGCTTCACCGCCATAGTCGCGGGCAAGCCCCCTCCCACGGGAGTACATCCGATAGAGTTACATCGCTTGAAGCACTGCTTTCGCGACTGAAGTCGCTCCCACACAAGCCAACTCATTCGCGAAAGGCCTTGAAGGCATCCTGCACAAACCTTCTAGACTTCCCATCCCCCATGCGCGATAACACGCTTCTCTATCCCCTTGTTTGCCCATAAGCCTGCCATGACTCAGAGCAACTGGATCAATCTTGCTCAGGACCGCGATACCGGTATCGAGACGCTGCATGCGCATTTCGAGGGGAATGCTCATGCCTATGATCCTCACTGGCATGACAGTTATCTGGTGGGTGTGACGGAGCAGGGGGTTCAGCAGTTTCATTGTCGGCAGCAACGTTATGCCAGCACGCCGGGTCAGGTGTTCATGCTGGAGCCGGGTGAGATTCATGATGGGGATGCGCCCAGCGCCGAGGGTTTCACGTATCGGACGCTGTACCTCGACCCGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 156649-155780 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPE010000002.1 Pseudomonas cichorii strain LJ1 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 156648 28 100.0 32 ............................ CAGGTGAGCCGCAATCGAAGATCGTGCAACGC 156588 28 100.0 32 ............................ ATACGACGTCCGCATTCACAGCGCTGGCAAAT 156528 28 100.0 32 ............................ GATGGTCACGCTGTCTTCTACAGACTGCCGCA 156468 28 100.0 32 ............................ ACAGCGAATGGACGTTTGCACATCACACCTGC 156408 28 100.0 32 ............................ TTTACCCACCAAAGAGAACACCCACCATGGGC 156348 28 100.0 32 ............................ CAGTGACCGGGCGACGACTGCAAAAGCCAATT 156288 28 100.0 32 ............................ CTCCAGGACACAAGCGGCAGACCGGTAATCAC 156228 28 100.0 32 ............................ GGCGCTTCCAGGCTTACCGCTGATGTCTTTAC 156168 28 100.0 32 ............................ ACCGCCAGAACTGGCGGGCTCGGCAGGTGATT 156108 28 96.4 33 .................T.......... CGTTGAACGAGGCAGTCATAAACCAGGTGATGC 156047 28 96.4 32 .................T.......... GACCCCACGTACACATTTTTTCCCGTTTCAGG 155987 28 96.4 32 .................T.......... TGACAGCGAGCAGCGAGCTCTTCGGGATCAGC 155927 28 100.0 32 ............................ TAACGTGTTGGCTTCTGTCACCGAGGCGTCGA 155867 28 96.4 32 ......................C..... CATGTATTCATGTCGTAGAACTCGGCGGGCAG 155807 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.8 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CTGCAAAAAACCTTGTTGACCAATGATATGCGCATCCCTATACTTCGCCGCCATTGAGCCCTGATGGCGGAATTGGTAGACGCGGCGGATTCAAAATCCGTTTTCGAAAGGAGTGGGAGTTCGAGTCTCCCTCGGGGCACCAAACAGCAAGACACCCAAGCGGTTGCAGAGCTTGGGTTTAAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGCCTGGGTTTTGGTGATTGCAGGGGCTGTAGGAGCGAATTCATTCGCGAATCAGCATTCCAGGCAATACATGTCCTTTTAATGTACCGGCCTATCGCGACTGAAGTCGCTCCTACAAGTCCGGCGCCAAACCACGACTTAACGCACCCTCTTTTTGACCCTCTTTTTTCAGACTCCGTCGCCCCCTTTAAAATCAATAACTTACGAGAGCCACAAAAAAGAGGGTAAAACAGCTTCAGGCAGGTGGTTTCTCTTTAAAAACGGAGAGTTATTAGGCAAGGTGTCTA # Right flank : ATCCTCGAAGTGCAGGAAGAGTGCGTTGTTGGATTCACTGCCGCACAGGCGGCCCAACCCTCATGCCAGTCAAATCCTACACCACACTTACACACGCCCCACAACCACCTACTCCCCATCCCCTCACCCAAACTGAATCCCCTCATTTTACCAACCCAGCCCCCAAGCTACCCTTCCCGTCATTCGCTGCCCCAGCAGCGACCGGGTTTGGCGACCCGATCTAAAGATAAATTCCCCCATCGCGAAGCAGTCGATTTATTCTTCTGCGCACTGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGTCTGCCGGGTTTATCTTTTTACCGGTTCGCCAACCCTCACACAGCTGCCTCCATTTGTTTGGCGACAATCCGTGGCAGCTTTTTTCAGCGACCATAAAAAGTGTGCCTCTATGCAAAAGCTTCTATCCGACTCCCCGTGTACATCCTCCTTCCAAGCCACCCTCTTCCTGCGACACAGCCGCATGCTCCGCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : CTTCACTGCCGTGTAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //