Array 1 430999-433016 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIV01000001.1 Rhodothermus marinus SG0.5JP17-171 Rhoma_Contig849_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 430999 30 100.0 37 .............................. TCTGCAAAGGGAGGATGAGGACATCGAACTCGAGGAG 431066 30 100.0 36 .............................. GCGGGCCGGTGCCCCGACGCTCTTGCGCAGCAGTTG 431132 30 100.0 36 .............................. GCTCGGGCCTGAAGTCGGTACAGGTGAACGTGTCCT 431198 30 100.0 35 .............................. TGCTGAGATGGGGCTGGCGAAGCATCTGGCGAATG 431263 30 100.0 36 .............................. TCGTCACGCCCCGCTGAAGGTGCGGAGAGCTGGCCT 431329 30 100.0 36 .............................. GGTGTACAAGCGTGAGGGATCGATCGTCGAGGAATA 431395 30 100.0 37 .............................. ACGCTTCATGCTCGATCCAGACTTCGAGCATCGACCT 431462 30 100.0 36 .............................. GAAGCTAAATAATGCAAAGTTAGCTCGTAAATATCG 431528 30 100.0 38 .............................. GCGGCGGGTTCGATGTGGACGGCGTGATTGCCGCCGGA 431596 30 100.0 37 .............................. TTGTACTCCTCGCCCCAGCGGTCCAGAACCCGGTTGG 431663 30 100.0 37 .............................. GTTCAAACCGGTAGTAATCGTTCTTCACCATTTCTTC 431730 30 100.0 36 .............................. AAGAAGTTGTGACGATGACTGAGTGAGCCAAATTGC 431796 30 100.0 37 .............................. GTGTTTTTCCGACTATGACAGCGATGCGATCGTGCGG 431863 30 100.0 36 .............................. CTGTTTCAGCACGTAATTGAAAAGCGGCACGTCCTG 431929 30 100.0 36 .............................. GAAGGAGCAGTTGCAGATAGTCCACGACAATCAGAC 431995 30 100.0 36 .............................. CTTCGCCAGCGCCGCTCCAGCACGCGCCAGATGGCA 432061 30 100.0 36 .............................. CGGGGAATGCAATCGTTCCGCAGGTCGGGGCAGTTT 432127 30 100.0 36 .............................. ACTGGGAAAAGCAAGGGCGGCCCGGCGGCCGCTTTC 432193 30 100.0 33 .............................. TTGCAAAACGCAACGTTTGGCGTATATTAAAGC 432256 30 100.0 35 .............................. TCTTTGACGAAGGCCTATCGAAGTACTGCGTCCTT 432321 30 100.0 38 .............................. ACTTCGAAAGCGAACGCGTGAAATATGATATATAGCAA 432389 30 100.0 35 .............................. ATCTTCGATCTTATCGACGAGACGGCGCCGGTGAA 432454 30 100.0 37 .............................. TCCTTGTATACGAGGACTGGGGCGCCGTCTGGTCCGA 432521 30 100.0 36 .............................. GACGTTCTACCGGCACCAAACGCTCTACCGAAGGAC 432587 30 100.0 39 .............................. GTCTATATGCACCGTGCAGATCACAGTCAAAGGCAGCAT 432656 30 100.0 35 .............................. CCTAAAGCCCCTTTCCTGGGCTACCTTTTCTAACT 432721 30 100.0 37 .............................. CATCAGGCACGATTGGCGGTTGGAGCATTACGACCAA 432788 30 100.0 35 .............................. ATCTTCGCTGACCATGTGATGGATGAACTTCCAGG 432853 30 100.0 37 .............................. AAACGAGTGTGGCTGTACGCAACCGGATGCGGGCGCT 432920 30 100.0 37 .............................. TCAGATCTCGGTGACGAATGGGAATGGCTCGCTCATG 432987 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 31 30 100.0 36 GTTTTAATCGCACCTTTTTGGTATTGAAAT # Left flank : AGGGCCGCAGCGCCTGCAGGGTGCGCACGTGATGAGCACCGACCTGCGCGGCAGCGTTTCGCTGGTGCTGGCGGGTCTGGTGGCCGAAGGCGAAACGCACGTGTTGCGCGTCTACCACCTCGACCGCGGCTACGAAAACCTCGAAGGCAAGCTGTCGGCCGCCGGCATTGCCATCCGCCGCGAAAGCTACGACGAGTTTGCTACCCCTGCCTCCGAATCAGCCGAAGAAAGCTGAATCGTCCCAACCTGTTGTTATACAATCACCTGTATCCAGAACGGCATCGTCGTCTCCACCCCGTTGAAGCCCTGTCCGAGCCGACCAGCAATGTCCCGACAAAAATTGATCGACACATCATACTGATAAACAAAAGTTTATGCAAAGTCGTCGACCCCCGGGGTTTCAGGGGTAACCGGAGGTCGACGACGCCAGGGGCTTGACATTCCCGATCAAATCGCTTATAATTTCTCCAAGAAGGCGGTTCTGCTCTTTGAAAGGCCGG # Right flank : TTTTATAGATTCACACAAGCAACTCTAAAGCTCTTCGCTTCTTTCGACTTGCAATTGCGCGGGGAGGCATTGTAGTATGCGGGGCGAACCTGATCGTCTGGAACCATGCCCCCTGCTGTTGCCACACGGGCGCGGCGGGCCCGCCAGATCGCCGAAGTGCTGCTCCGCCACGGCCTGGGCTATCTTGTGAGTATCTTCGGCCTGGAGCGCTTCGTGCCTTTGCATCGGGGTCTGCTGGGCCATCCGCGCCGCCCCGAACCCTATGCCGCGCCCGAGCACCTGCGCATGGCGCTCGAAGAGCTGGGCGCCGCCTGGATCAAGCTCGGCCAGTTTCTGGCCACCCGCGCCGACCTGCTTCCCCCTTCCTACCAGCGCGAACTGGCCCGTCTGCAGGATGCCGCCGCCCCCGTCCCGGGCGCGCAAATCCAGGCCGTCATCGAGGCCGAACTGGGACGCCCGGTCTCCGAGCTGTTCGCCCGCTTCGAGCCCGAACCACTGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGCACCTTTTTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 535516-531960 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIV01000001.1 Rhodothermus marinus SG0.5JP17-171 Rhoma_Contig849_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 535515 30 100.0 35 .............................. TGAAGCACGCAAAACTCCTTCTGTTGCTGGCCGCC 535450 30 100.0 37 .............................. TTGACAATGCCGATGTGGGCGCGCTGGCCTACATCAG 535383 30 100.0 36 .............................. GCAGGAACACCATGCTGCGGAGTGAGCGGATATTGG 535317 30 100.0 38 .............................. ACAGGAAGGCAAGCTGACTGTCGCGATCCTGCAGGCCT 535249 30 100.0 37 .............................. GGAGCACAGTTTTGTGCAAGCACCCGGCATATACTTC 535182 30 100.0 39 .............................. GGCGTACCGCTGTCGCCGATCCTGTTGCGTGAGCGCATC 535113 30 100.0 36 .............................. TGTACGACAAACGGAACTTGGCCCTCACGGCGAGCG 535047 30 100.0 37 .............................. GACGGCGGCAAAGAAAGAATGACATTGCCGCCCTCAT 534980 30 100.0 36 .............................. GGGTAGAGGCGCTCGTCCTCGTCCAGGACATAGACG 534914 30 100.0 36 .............................. GTACAGATATTTCAGAGTCCACGATCCACAGATAAT 534848 30 100.0 36 .............................. ATTGAAGAGCATCGGCGAGATGCCGTACGTGTCGGC 534782 30 100.0 37 .............................. CGTGTATGCCTACGAGGAGCTGAACTCGTACTGGCAG 534715 30 100.0 35 .............................. CTCCGAAAGAAGTTACTTCCTCAGTACAAAGAGCA 534650 30 100.0 37 .............................. CTGGCCCTCGATCTGTACGCTTGGCTTTCGTATCGGG 534583 30 100.0 37 .............................. AATAGCTGGTACGGGGAACTGAACTTGGCGAGGATGC 534516 30 100.0 38 .............................. TACAGCTCCGACTGCAGCACGGCCGACAACCGCGCCCG 534448 30 100.0 35 .............................. CTTGGAAAAAGTCTCGGTGGGTGATCGGCGCGTAA 534383 30 100.0 38 .............................. CCTGAAAGCGCAAGGCCAGCTTCGCTACTGGCGCAACA 534315 30 100.0 35 .............................. TTGCATAACCTAAAAAATGAACGCTATCCTTTAGC 534250 30 100.0 37 .............................. GGAAATACTGTTTGTTCAACTTTCTGGCAAATTGCTC 534183 30 100.0 35 .............................. GCGGTAATTACATCTGGATCGATAATGGCTTTTAC 534118 30 100.0 39 .............................. TATATTTCAACAACCACCCCTCTTTCTGAAGGGAATCCA 534049 30 100.0 35 .............................. GATAGGGTGGCAACACCTCGCGGTAATCCTGCGGG 533984 30 100.0 37 .............................. GTTGCCCGAGCCGGGCTGTTTCTTTTCACTCGTTGTG 533917 30 100.0 36 .............................. GCGCGTAATGCCGGGCTGGGTGTACATGTCTCCCGA 533851 30 100.0 37 .............................. TTCGCCTTCCGTATGCCGCACCAGACAACGGCTTGCG 533784 30 100.0 37 .............................. TGCAGCGCCTCTACGGCTGGTCGTGGCGCAAAGCGCG 533717 30 100.0 37 .............................. ACGTCGCCGCCATCCTGGCCGCCTACCGGACGATCAA 533650 30 100.0 37 .............................. GGCGAAAACTATCGTCATCTGGGGTGGCGCTTCCCGC 533583 30 100.0 37 .............................. TTACGTTCAACGTCACGCGAAAATCCACGGTCTTCCA 533516 30 100.0 36 .............................. AATCATGGCGTTGGATTACGCGCAGCGCGTCGTCGC 533450 30 100.0 38 .............................. CTGGACCGAGACGCCGACCGACCAGCGATTGAAGGCCG 533382 30 100.0 38 .............................. GTGACGGGCGCCATCGAATGGCTTGCCCAGGATGGCGT 533314 30 100.0 35 .............................. ACCGCCCGCGCGTGGCGATCAGGTGCTCGGCCTCC 533249 30 100.0 37 .............................. CGAAAAATACGATAGCTTTCATGATGCCCTCCTTCGG 533182 30 100.0 34 .............................. ATTGGATTTTGTCGGCCAGCGGTCCTTCGGTAGA 533118 30 100.0 36 .............................. GCCAAAGCCCAAGGTCGACTGTCTAAAATCGCAGAG 533052 30 100.0 38 .............................. GGCAGAGACGATGAAAAAGGCCGTGGACTACGAGTTCA 532984 30 100.0 35 .............................. GAAGTGACCGAGAGCCGGATCGTCACCACTCTCAA 532919 30 100.0 38 .............................. ATCTTCGATCTTATCGACGAGACGGCGCCGGTGAACTG 532851 30 100.0 37 .............................. CTCTGCGGCTGGTAGGGGACAGGCAGCGCCACACGCT 532784 30 100.0 35 .............................. ATCTGAAAAGCACGGGCAATCTGCTGGTCGACGTA 532719 30 100.0 38 .............................. TCGGAACGCGGGCGTAATCGACCACCTCAGCCCCGACC 532651 30 100.0 36 .............................. CGAAGCGGTAGCCGCGCCCGCTGGCGATCACCTCGG 532585 30 100.0 35 .............................. TATGTTGGCCTCCGACTGGCCCACGAGCGACCCTT 532520 30 100.0 35 .............................. AGGTCGCGAACAAGCTCTTGCGCAATGATGGTCGC 532455 30 100.0 37 .............................. AGCTGCTTTGCAGCAGCTAGGACGATGGACGACACAA 532388 30 100.0 36 .............................. ATCAGGTGGAGGATTCGATCGAGGGGTGGTGCTCGG 532322 30 100.0 36 .............................. TGATCGATGCGACGCGCAAGGGCCACCCGCTGCACA 532256 30 96.7 37 ..................A........... GCAGGGACGCGCGGCGCTCAAGTACCAGCGAAGGCCG 532189 30 96.7 38 ..................A........... ACGACTTGGCACGCCTGCGGGGCGCCAGGCTGGTAACG 532121 30 96.7 36 ..................A........... GGGGTTGATTATGATATTGAAAGAAATGACGATTCC 532055 30 96.7 36 ..................A........... GATCCTGCAGGTGTCCAGCGTAGCAGGTTCCGTACT 531989 30 96.7 0 ..................A........... | ========== ====== ====== ====== ============================== ======================================= ================== 54 30 99.7 37 GTTTTAATCGCACCTTTTTGGTATTGAAAT # Left flank : TTCAGTACCCAGCACCAGACGCCGGCTGTAACGGACGTCGCGCAGCTCGTAAAAGATGACCACGTCTTCGTCGGGGTTCATGAGCCGGCCGGCTTCGTGCTGCAGGCGCTGAAACTGCGCTTCGGTCAACTCGCCCTCGAAGACGGAGCGCTGCACCCAGGTCAGATAGCGCCGGAAGAGCTTAAGCATTTTGGCGACGCGCCGCACGTTGACATCGTAAACGGCAATGTAGTACGGCATCGTAACCTCCTGTAATTACGTGAGAAGTGCCCTGACTGGCGTCGTCGACCCCAAGATAACGAACTGAATTCGGCAACGCAAATGATAGGTAAAAGAAAATCTGTTGTTTTATTTCTTTTATTTTTAGCAGTTTAATAAAAGTTGTCGGACCCCCGGGGTTTCAGGGGTAACCGGAGGTCGACGACTCCGGGGACTTGACATTCCGGATCAAATCGCTTATAATACCCTCCAGAAGCCGGTTCTGCTCTTTGAAAGGCCGG # Right flank : AAAGCCACGGATTGGCTAATCTTGAAAAAGTTGGAGCGATAGGGGCGAAGGGGTTACAATAGGGCCCCAATGGTGTCTTTTAAATAAAGCGACCGCTGCTGAAGTAGTACCGACCTCTGCTGTATGTATCATCAGGAGCGTGAAACGCTGTATCTGGGAGCTCTCCTGCACGATCTGGGGAAATTCAGGCAACGAGCCCATGACGAGCGTACCAAACATGCGCTCATCTCTGTAGCGATCATTGATCGGCTAATAGGCACGCGAACAGATGCAGAGCAAATCAAAACGCTTGTTTCCTATCATCATCGGGAAGACCTGAGCCAAAGCGGGCTGCAAGGACGTTTGCGTAAGCTGGCCGAAATTGTCTGTGAAGCCGACTCGCTGGCCAGTGGCGAACGTAATCCCGATATAGAGCAGGCGCAGCGACCGCTTGAGAGTATCTTCAGCCACGTCCGGCTCGAACAATCGGCAGGCGCATCACCTCAGGTCGCCTGGCAACC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGCACCTTTTTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.40,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 3 3110862-3111554 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIV01000001.1 Rhodothermus marinus SG0.5JP17-171 Rhoma_Contig849_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3110862 30 100.0 38 .............................. GATCCTGCATGGCTTCAGGCGTCCAAGCGGCACGCAGC 3110930 30 100.0 37 .............................. GTGGCCAACGATGCGACGGGGAGTCGTTACGCTTACA 3110997 30 100.0 36 .............................. TGTTCACTAAAACTTCACATCATTTTCACAAAAACT 3111063 30 100.0 38 .............................. CTCGGCACGTCTGAGCCAGCTAGGACCTGCCGTCCAAG 3111131 30 100.0 38 .............................. ACGTAAGCGTGTCGAACACCGGGATGTGTATGTGCCAG 3111199 30 100.0 36 .............................. CTTGCTTCATGGAGTCGCTTGATCATGAGCACGTCG 3111265 30 100.0 36 .............................. CTTGTGGACGACGGAATGCGTTCCCGTAGCGTAAAC 3111331 30 100.0 38 .............................. TTGCGTGCATGACAACCTCCATTGTTTGTTGTTGTTGC 3111399 30 100.0 37 .............................. CACGCGCAAGGCGCTCGAACCCGAGTGGGAGGCGTCC 3111466 30 96.7 29 .............................C TTGAGGCGCCATGAAGGCCATCATATTTT Deletion [3111525] 3111525 30 93.3 0 ...........................G.G | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.1 36 GTTTTAATCGCACCTTTTTGGTATTGAAAT # Left flank : AAGTTTCCAGCATGATAAACAAATATCGACAGGCGTGTCAAGTGGGGCGGGGGTGAAGGATCGGTAAAGCCGCACCGTGTGGCGCCGGCCGACGTGCAGGTAGGAGTGGTCGGGATCCGATCTGAATCGAGGGTCGGGAACGCGTTGTCTGGCGTGCGCTGGTCCGGGAAACTCAGGACCGTTAATGGAACGGTGGTTTTACAGGATGGTCAAGACACAGGAAACGTGAGTTGTGCGAGCATAAATGCCGTAATTTCATAAGGTAATGCCGTAAGCAGGGTCGTCGTCCACGGAGATAACGAAAAGCATTCGGCGAAGAAGGTGGGGTAAATTCAAGAAGATTGTCTGTATGATTTTGTTTTAAAATGGTTTGTCTGAAGTCGTCGGCCCTCCGGGGTTTCGGGGGTAACCGGAGCTCGACGACACAGGGGGCTTGACATTCCCGATCAAATCGCTTATAATGCCCTCCAGAACCCGGTTCTGCTCTTTGAAAGGCCGGG # Right flank : GAGCGGCAAAACAAAAGCCCCGTGAGCTTGAGGCTCCGGGGCTTTTCGGTCAGCTCTTCGGGACGTTTGCTGTGGACGCGGGCAGCTACTCCAGTCCCAGCACTTCCGGTCCCTGGATGAAGACGATGTCCACCGGGATGCCGGCCTGCTGGATGCGGGCCAGATCGGCGCGGAGCGTGTCGTCCATCTGACCGTAGCGTTCGATGAAGGCGGCCGTGGCCGCATAGTCGCCGTCGCCCTGCAGGCGGAGAATCTGTTCCGAGAGCGCCGCGACGGCCGCCTGCATGCGCTCGGGCACGACCCGGTAGGTGCCGGTGGCCGCGTCGCGCGTGAAGGCGCCCTGCTCCTTGAAGAAGTTGAATCGGATGAGGTTGGCGCGGCCGTGGGCACTGGCCGCCCCGAAACGGATCGAGCGGAAAATACCGGCCAGGAAGGTCACGTAGTGGTCCATCGGATCGGCCTCCCACTCGCCGCGGTCGATCAGCCAGGTGACCATGTAG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGCACCTTTTTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 556-102 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIV01000002.1 Rhodothermus marinus SG0.5JP17-171 Rhoma_Contig848_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 555 28 100.0 33 ............................ CAGGTGCGCCCCTACGCGGAGGTGATCAAGAAG 494 28 100.0 33 ............................ CCAGAATCAGAAAACGCAGCATCTGAGGCGATG 433 28 100.0 33 ............................ CACGACCGGTGAGCACGTCGAGGATCCGAAGCG 372 28 100.0 33 ............................ TCAAGAAGGTGTTGCCATAATGAAACCGCGATA 311 28 100.0 33 ............................ CTGTCCACCTTCTGCGGCCGAAAAAGACGGCGG 250 28 100.0 33 ............................ CTTTGCGCTGATCTTTACGGCCCGCGTGCTTTT 189 28 100.0 33 ............................ TTACACGCATGGAGGCGTAGCCGCCCGGCGGGA 128 26 92.9 0 ..................--........ | T [126] ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.1 33 GGGTCATCCCTGCGCGCGCGGGAGTCGG # Left flank : ACATGGCTTGTGCGCAACTGTGACGTGATCGTTGTAGAATCGCTCAGTATCAAAGGAATGCTCAGAAGCGGTCGTTTTTCGCGTCACATTGCCGATGCGGCATGGGGAACTTTTTTCCAGATGCTCCAGTACAAGTGTGAGCGGTATGGGCGCACCCTGCTCAGGGTAGAGCGTTCTTATCCGAGCAGCAAGAAGTGCAGCCGTTGCGGTAAGATTCGAAAGGCATTGTCACTATCGGAACGCACGTATCGGTGTGATCAGTGCGGACTGAAGATAGATCGTGACGAGAACGCTGCGTTGAACTTGATGAAACTCGGGTTGGCTCACCTTACGAGCCCTACCGCCAGACTGGCGGGAAGTGACGCCGGAGGAGATACGATCGCGGGTGGTGCCGCCGCCTGCACGTAGACGGTTGCGGCATTGGAGCGATCGGCCCCGGAATCCGTGCTTTGCAGGGAGAGCCCCGCGCGCCGACCGCTGGTGTGCACACCTTGCGCAGC # Right flank : GTATAGCCCGCCCCGATCAGCTCCGGATGGCCATCACCGTCTAGGTCGCCGGTGGTGATGCCCAGGTTCGTCGGGCCCTCCAGCAGCGGAAAGATGAGCTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTCATCCCTGCGCGCGCGGGAGTCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 59943-61092 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIV01000002.1 Rhodothermus marinus SG0.5JP17-171 Rhoma_Contig848_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 59943 37 100.0 42 ..................................... TAGTGTACGACGCATATTCCCCGACGGCTCGGAACTGATTGT 60022 37 100.0 37 ..................................... TGCCAGTAGAAGGCAAACCCGAACGGGGCGTCCTGAG 60096 37 100.0 44 ..................................... ATCCTTTGCCACGTCTACAAATTCCCGCTCGTTACCTTCTTCAT 60177 37 100.0 46 ..................................... CACTCCCGCTCCGCGACTCGTTGCGCCGCCCGCAGGGACGACGCAA 60260 37 100.0 36 ..................................... TCTTTGATCTTCTTCATGGCTCCCACCGTAGTTTTG 60333 37 100.0 45 ..................................... ATGACCCGGCCGCCGACGACGATGTTGCCGTCCTTGTCGATTTGG 60415 37 100.0 45 ..................................... TCTGAATACTTAAGATTACAAACTTGCCCGCCCTGAAGCGCGCCA 60497 37 100.0 39 ..................................... GCGCTCTCGAAGCAGACGGGTAAGAACCCGCTTGATGCC 60573 37 100.0 46 ..................................... TTTTCTTCACACAAACACGTTAAAGCACGTCACGATCCCGTTCGCC 60656 37 100.0 43 ..................................... CCGTACATGAACAGCACGATGGACACCGCCGACTGCTCATCCC 60736 37 100.0 47 ..................................... CGTCGAAGCGCTGGGGTGACGTCCGCCTGGCATACAGTCTCTTTGCC 60820 37 100.0 41 ..................................... CGAGAAAGTACTCGCCGCGTGCGATCTCGAATCGTGATGTA 60898 37 100.0 40 ..................................... GGGCTCGTCGGTTATGACGTCGCTGTTCAGGTTAGGAATA 60975 37 100.0 44 ..................................... TACAGACCATAAGCCTGCCCGCCGATCTCGATGAGCCAGTTCTT 61056 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 15 37 100.0 43 GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Left flank : TCCGGCGTGTCAGCCCCGGGGGTAATCATTGCCCGGCCGGAACTGTTTCGGGCTACGCAACCGCCGGATCGTGGGCGGTCTGACTCCCGGCGACGATGTGGGGATTGAAGCGCCGAGCGGGGTTTTGCGGACACACGAATCTGACCGTTGCCCGGCGTGCAGGCTTTGAGCAGCCCCGTTGCCTGCGGTGCTCAGCCGCTCCTCTGATGCTGTTCCGGTGTATGCCCGGGGCGTCAGACCATCGACTGCAGACATGGGTGGTTGACGGTCACTATCGGAGCCGTATTGTTCAGCTGGTAGTAAGGGTGCCGGCTCTTGACATTCCGCTGAGAAACACTTATGCTCCTGAAAGCGAGCAGCTGAATGGAGGGGGGTGTGACACGGAATTGTCACAGGGGTTTGAAAGCAAATTTCGTTCCGTTTTTTGGCGTTCTGCGCGCGCAAAAATCGGCCCGTTTGGCCGCAAAAAGGCCGGTTTGGAGTGGCCCCGTAACAATGGG # Right flank : CGCCACCCGGAATAGCTCCTGCTATAAGACCTCGGGGATTGAATGCTGGAGACAAATTTTGACCTGACCTTTCTGGCGTTTCTTTTTGCTAGCAGGGGCCCTGGCAGCTGGTGCTCGGTCGTGAGCTGTTGATTTTGCCTCCCGTTATTGTTTCTTTTCGGTTATAAAGGCTTTTTCCGCGGTCAACTGAAGGAGTTCTATTCTGAAATGGACCGCTACTGGTATTCGGCAGCGGCGCGTCTCGGGTTGTGGGACACTCTGCCCGAAGCGCAACAGGGGCTGGTCAATAACCTCTACAGACGACTTCGATTCTATGCCCACGCGGTCCTGGAGGGCTACGAAGCATTTGCTTTCGACAAGACGGAGTCCGAGTCTCTGAGTTCGCTTCTGGCCGTTATCGACAAACTGACGATTCGAGGGTGCCCGACGCTGGTTGATCTCGACCTGGAGACGGCCTTACTCGAAGGCCCCTGCCGCCAATTCGTCGATGCAGTCCCGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 3 71318-71516 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIV01000002.1 Rhodothermus marinus SG0.5JP17-171 Rhoma_Contig848_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 71318 37 100.0 47 ..................................... GCCCATTCGGCCTCGGCAACGCCAACACGCTGACGATCACGACCCGA 71402 37 100.0 41 ..................................... TGATATGTCTCTTCTTCACGACATCTGGTATCCGTGCTTTC 71480 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 3 37 100.0 44 GTCCGAAAACTTGACCCGATGAAAAGGGGATTACGAC # Left flank : CCCTGGCATCGACCGGGTATCGAGGGGCCGTCGAGGTCGAAACGGTCTATCGCCTATTGGAGGCGCTTGGAGACCCGGTGGGCCGTCTGTTTGCGAAACGCCGCACGTCATTGCTTGAAGCGCTGGAGCAGAGCCGTCATTCGCGTCTGATAGGGGGTAATTTTTCGATTGACGAACAGACTTATGGGGTTGTGCGCAGCCGACTTGAAGGGTTCCTCCATGAGGCGGCCCGGTTAACGGACCAGACGCTTCAGGCTCCACAACTACCACGTTCGGAAGTGCTGGACTGGGTGGGCCTCGAGTGAGTCGCTACGTCTTGACATTCCGGCACAGAACACTTATGATTCAGGAAAGAGGTATCTGAACGGCGGAGGTGTGACACGGAATTGTCACGGGGGTTTGAGAGCAAATTTCGTTCCGTTTTTTGGCGTTCTGCACGCGAAAAAATCGGCCCGTTTGGCCGCAAAAAGGCCGGTTCTGAGTGGCCCCGTAACAATGGG # Right flank : CTTTACACCGCCATGATCGGACATTATTTTCTGAATAAAAAGCAGGAATAGCCATGCGACGGATCGCGCTGCTTTTCGGTCTGCTGCTTGCGCTGCCGCTTCGTGCGCAGCCCACGTTCGATCTGCTGGGCGGCCTCGGCCCGGCGCGGCTCGGTGCCGGTCAAAACCGCTCGGCCATGCACGGGTGGTTCGCCGCGGGCGGACACCTTCCTTCGGGCGTCGGAGGCTTTCTCGTGGTCGACCTGCTGCAGGCCACGGCACCCGAACAGTCCGGCATTATCTGGGAGGGAGGCTACGCACTTTCCGGAGTGGCAACCGTCGTTGCCTATCGCATGACGTCCCGTCGCCTGCTGTTCGGCACGCTGGCAGGCCCGGGTCTGTGGCAGCTGTCGATCGACGCTTCGGTCTCAGGCGTCAACACGGCCGTAAAGGACCACACGGCAATCGGCTTTCTGCTGGGCGGCTATGGTCTGGTGCGCCTGGGCGGCACGTTTACGGCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAAACTTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 4 72172-72359 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIV01000002.1 Rhodothermus marinus SG0.5JP17-171 Rhoma_Contig848_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 72172 37 97.3 36 .......A............................. CATGTTCGCTGGCCCATTGCTCCAGCGAGGCCAACA 72245 37 100.0 41 ..................................... TCTGTATATGGGTTGTAGTAGAGCGTTCCGCTGACCAGGCG 72323 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 3 37 99.1 39 GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Left flank : CCGGTCAAAACCGCTCGGCCATGCACGGGTGGTTCGCCGCGGGCGGACACCTTCCTTCGGGCGTCGGAGGCTTTCTCGTGGTCGACCTGCTGCAGGCCACGGCACCCGAACAGTCCGGCATTATCTGGGAGGGAGGCTACGCACTTTCCGGAGTGGCAACCGTCGTTGCCTATCGCATGACGTCCCGTCGCCTGCTGTTCGGCACGCTGGCAGGCCCGGGTCTGTGGCAGCTGTCGATCGACGCTTCGGTCTCAGGCGTCAACACGGCCGTAAAGGACCACACGGCAATCGGCTTTCTGCTGGGCGGCTATGGTCTGGTGCGCCTGGGCGGCACGTTTACGGCCGGATTACTTTTCACGAGGCGCTGGACCGCAACGGAACCCTCTTCGGTGGGCTGCTTCGTCGAATGCCTCTCCCGCACGATCGGCAATGGACATGCGGGCGGCAGCGGCCTGTCGGTCGTGATCGGCGCCACGATCCGCTGATCACCGCCACACGCG # Right flank : CAAACGGGTGGGATATAAGCGCAAGGGGTGGCCTGCTTTCTTCTTCGGAGTCAGCAGCTGTTCAGGAAAGGCTTCGCAGCATTCAATGGGCTAAACGACTCATGCGCCTGTTCTGATTGGGTCGGATCTTCAGACTTATGCGGCAATAAGGCTTTCAGAAAAGGCTTTCATGGAGCGTTTCTGGTTTTTGTTCGCGATCGGATCCCTTGCATTTCTGATCTACCGCTATAATCAAATATGCCGAAAAAATCCAGGACTAAACCGTCAAGTTTATGCTTTTACATTAGCTTTATTTTTAATAGTTTTTATTGTAGCAAATATTTATGAATATATATGCGCGGCTCCCCTTTTTGTTATCTACTTGATTTTTCTTCTGAAAACTTTTTTCGATCATGATAAAATCCTGGCTCTTTCTGCATTGATTACTGTCGTTGCTTCTTTCAATCTTATGTTAGAAAATATTTCTGTATTCAGTTCATTTTTTCTTCTTGCATGGCTTG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 5 78918-79505 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIV01000002.1 Rhodothermus marinus SG0.5JP17-171 Rhoma_Contig848_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 78918 37 100.0 46 ..................................... ACGATATTCCACCTTGAGCGGCCACCCGAGCTTGTCACGGGCTTCG 79001 37 100.0 43 ..................................... GCTGGATATCATTGCAGATGAATGCACGATTCCCAACGAAAAC 79081 37 100.0 47 ..................................... TGGACTGGCGCCACTTCAGGTTCTCCATTCGTGGAAGAATGGAGACG 79165 37 100.0 41 ..................................... GCACAGCGTGGCAGACAAGCTGCAGCACACACGGGGGTCCC 79243 37 100.0 39 ..................................... TCAAGCTTGAGTCGCTAGACCAGTCGAAGATCGATTTCA 79319 37 100.0 38 ..................................... TTCTCCGCCCGCAAATTCCCATCCTCTGAACCCCTCCA 79394 37 100.0 38 ..................................... TCTTTCACTTTATCCCACACCTTCTCGGGAGCGTTTAC 79469 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 8 37 100.0 42 GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Left flank : GGCTGAGGTGAAGGCTTACCCCCGGGTGTTCGATCTGGAAGTGAGTTGTCTGGTCGAGGTGGAAGCGGAGCGGATCTATGATGAGGTAGACCGCATCTGCGAGACGATCAAAGACTGGGCAAGTTCGCATCTGAACGGGCGCAGGCCCTGCGCCTCGATCAAATGGGACGTCCCTCGAATGTTAAAGGGGCGAATGCGTGTTCGTTATGAAGAGGCCCGGGAGTTCATGAGCCGGCGACGTGAGCACATCTGCGCCCAGGTTCAGCAACACTGCAACTGACGTCGGAGGGGTGGTCGAAGCCGGCCACCCCTCCCCTTGACATTTCGTGAGAAATCACTTATGATCCCAGAAGTGGGCCATTGGACGAGGGGGGTGTGACACGGAATTGTCACAGGGGTTTGAGAGCAAATTTCGTTCCGTTTTTTGGCGTTCTGTGCGCGCAAAAATCGGCCCGTTTGGCCGCAAAAAGGCCGGTTCGCATGGGCCCCGTAACAATGGG # Right flank : CTACGCCAGCACAGGTTGTAGACAAGGCTCGAATTGTAGAAGAAGTCCGACCCATGAAGTAGGGGTCGAAAAAAGCACTTCTTGTGGGAAATTTTTCTCTTCATCGATGGGATAAACCACTCATGCGTTGATGTGCGGCTGTTCGCATCTTTCTCGGACAGGACGATCCGGTCGTAGTGATTCACGAGATGGAAGCCGGGCAGATCTACGACGCCGAAGTGCCGGAAGGCCCCTGCTGGCCGGTGGCATGGGTGTACGAGTTTGCCTACTGCCTGCGGCGGGGCTACTACGCCTGGGTTGAAGGGCCCGGAGAGCCTGTTGCGCTGGATACCGGAGAAGGCGTGTGGCTGGCCTCGGACGCCTGGGGTGGGCCGGTGCGGTGGGTACAGGACGGTGCCGGTTGTCCCGTTCCCCTGCTACGGGTGCCCCGGGCATGCGCCGACGATTCCGACAGACGCCCCGAACATCTGATGCTGGCGGCCCTTGCCGATCTGGTGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 6 92889-93913 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIV01000002.1 Rhodothermus marinus SG0.5JP17-171 Rhoma_Contig848_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 92889 37 100.0 38 ..................................... GCCGCTGGGAGTCTCCTGGAAACCAAGCTCATTGATCC 92964 37 100.0 40 ..................................... ATAGCACTCTCCGGGCCGGTGTCGGGACTCACCACGTCGC 93041 37 100.0 40 ..................................... CTGTTGGCTCTGTTGGTCCATCCCAGCACCTCATCCTTGA 93118 37 100.0 43 ..................................... TGGGATCTCGTACGGGAGCACGTCGAACCTTTCTTTCAAGTCG 93198 37 100.0 41 ..................................... TGCTGGCTACAGCTCAACGACAATGCCTGCTGAGCGCTTGC 93276 37 100.0 39 ..................................... GCTCAAGCTTTTCGAGCACGTCCATCATCTCTTCGATGA 93352 37 100.0 34 ..................................... GGGAATGAGCGCCATAAGCAGCGTGCGATCGTCG 93423 37 100.0 36 ..................................... GGCCTCTTCGCCGAGGTAGCGCTGGCACCAGTCCAG 93496 37 100.0 40 ..................................... CTCGTAGAGCGCATCCTCGTCCATCTCACGCCCGTCGATG 93573 37 100.0 39 ..................................... GTCATAGTACTTATTTACCCACCCCTCGTCTGGCTCATC 93649 37 100.0 41 ..................................... GGCCTCCCAGTCCGGAATGCGCTGCTGCCCCTGAGGATCCT 93727 37 100.0 36 ..................................... GCATACGCGCCTGTTCGTTGAGCACAAGCTTTTCAA 93800 37 100.0 40 ..................................... ACCGTGCATATTGACCGGGCTCGGGACGATCTGGGTGCCA 93877 37 94.6 0 ..................................A.T | ========== ====== ====== ====== ===================================== =========================================== ================== 14 37 99.6 39 GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Left flank : GAAGGCTACAATGACTGTGCGCCACAGGATGAATCCTATCGGCCGCGTTTTTCCAGGCGCCAGTGGCCTCGCCCGAGCCGGATATAGGGACGGCCGGATGGCGTGCGGCCGATGCGCAACCCCCGGGTGCCGACGCTCAGGCCGATGCCTCGATGGCTGATGGTCAGCCGAACGGGTCCCAGGCGAAACGTCTTGTACAGATGCAGCGGCATGGCGTAAAGCAGCTGGTTGGAATGAATGCACCGGATGAACGTGCAAATACCGACCGGGATGCTTTCCAGAATTTCCGAAAAAGGGGAAGAACTTCGGCGAACGGGGGGCTTGACATTCTGATCAAAAACACGTATGCTTCGACGTGTTCAGCAGGGAAGGGGTGTGACACGGAATTGTCACAGGGGTTTGGAAGCAAATTTCGTTCCGTTTTTTGGCGTTCTGCGCACGCAAAAATCGGCCCGTTTGACCGCAAAAAGGCCGGTTCTGAGTGGCCCCGTAACAATGGG # Right flank : TCCGCTTTAGACGAGACAATCGACAGGAAAGAGGCTTTTCGGGGGCAGCAGGACACGGTCTTGACAGGGACGTGTCGTCTTGCTTTTCTTCCCTGAAGCATCCGTAAAGCTTCTGGAGCCTACCGCATGCCTGCAGCGCGTCGTGGCGGTCCGGTTCTGATGGCCACCCTGGGCGAGCAGCCGCAGGTGGTCACGCTTACGCTGGACCTGCTGGCGGCACGACGCGTGACGTTCGACGAGCTGGTGCTTTTCCATACCGAGCCGCACTATCCGGCCCTTCAGCGTGCGCTCCAGCGTCTGGAAACCGAACTGGCGCAGTGGCCCGCCTATCGCGAGCTTACGGTACGGCGCGTGCTCTTCCGGGATGAGGCGGGCCGACCGCTGACCGATGTGCGCGCCGATGCGGAGGCACGGCAGGTGTATCGCATCCTGTTTCGAGAGGTGCTGGAAGTCAAACGGCAGCGGCGCCCGTTGCATTTTCTGATCGCCGGAGGCCGTAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 7 101356-101922 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIV01000002.1 Rhodothermus marinus SG0.5JP17-171 Rhoma_Contig848_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================== ================== 101356 38 100.0 36 ...................................... TCAAGCGCATTGTAAAAGAAACCATCCTTAAACAAC 101430 38 100.0 36 ...................................... GCGAATGCCCGGTGAAAGGCGATCGGCCGATCCATC 101504 38 97.4 40 .....................................T CTCATTCAAAAACGGCTGATAAATCGCGCTGTTCATAGCA 101582 38 100.0 34 ...................................... GATTTCACGGAGCGACCGCATGGCATCTCCGTTT 101654 38 100.0 40 ...................................... AGACGACCGCACCGTTAACCAGTTTGCTTCCGCCGTATTC 101732 38 100.0 38 ...................................... GATATCCGTCGGCCAGCCAGCCCCGGATTACTTTCTCC 101808 38 100.0 39 ...................................... CCGTGTCTCTGGAGTTTGTCCCGGATACGCCCGATCACC 101885 38 97.4 0 .....................................G | ========== ====== ====== ====== ====================================== ======================================== ================== 8 38 99.3 38 GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGACC # Left flank : AGTTGGAGTGGCCCTGGTCGGCAACCGAAGCGGCGGCTACTACCGAAGAGGAGGCCGCCGAGGATGAATCGGACCTGTGGGTGGATCAGATCGGTCCCAATAGTCAGGATATTATCGCCGAGGTGGTGGATAACAGTCGTGCACCGTTTACGATTCGCATTTTTGTGCGCGGACTTGAAAATGAAAGATTCCCCTGTGGAGGGGCCAGCCATAGAGCGATCGAGGTGGGGCAGCGTATTCGGGTCAAGGTGTCTCAGTGGAACAAAAAAGCCGGACGTCCCACCATGTTTTCCGTACAGAGCATCCGGGTTTAGCCTGACAGTACGTTGCTTTCTTGAAACTGATACCATATAATAAAGTAGAGAGCGAAGAGGTGTGACACGGAATTGTCACAGGGGTTTAAAGGCAAATTTCGTTCCGTTTTTTGGCGTTCTGTGCGCGAAAAAATCGGCCTGTTTGGCCGCAAAAAGGCCGGTTCTGAGTGGCCCCGTAACAATGGG # Right flank : GGGTATTTCATGCGGGCGGAGTATTCTTGCGCTTAGCTGCGTGTCTGCTTTTGTCCAGCAGCTCGCTTTCGCTGCTTTGAGCTAATGCGCCGGAATCAATTTGCCACCTGCGCGGCTGCGGGCAATTGCAGGCAGGCAGTGATTGACGCCGTCTGGTCGGTTGCCAGTCCTGAACGTTTTGAAGGACGAGAAAGGGAAGACGGAAAAAGCTCTTTTCCTGAATCTCGACTTCCCGATTGGAAGGAAGGCCACGTTCGCTCCGGTGCGGGATGTGATTGAAACGGGCCACCTTGTGTAAGGACGATATATCGCAGACTGCGCTGTGTCTTACCCAAGGATTGCTGCTCGTTGTCCTCTGAGTTGCTTCACCTCCAGTGCTGAAGCGCCGGAAGTCTGGCGGCGGATCGTCGTCGGGTCGCACGCACATCAAACAGGACAACAGAGACAGCCTGCCGGGTGGGGGCATCGACATATCGCCCTGACTCCTCGGGACTTGTCCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //