Array 1 3494-5475 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIOG01000033.1 Corynebacterium diphtheriae strain ST378-KZN-2015-45464 45464_contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3494 29 96.6 32 ............................G CCGAATTGGGCGAAGCCATGTCGGTAGCACGG 3555 29 100.0 32 ............................. CAAATCTGGGAAGTTCTGGTCAGGGTCGGCGG 3616 29 96.6 32 ............................G TCGATCCTTTACCTGCTGCCACGCCGACGACA 3677 29 96.6 32 ............................G AGATGAAAGACTGGACGAACGCCCAGCTAAAA 3738 29 96.6 32 ............................G TCGCCTGCGGAAACCACACCCTCAAAGCGCTA 3799 29 96.6 32 ............................G CACTACTTTCCCATGGTCGTAAAGGTATGTTG 3860 29 100.0 32 ............................. CATGATCACACTCACAACCACACTCACCCTCA 3921 29 100.0 32 ............................. CTGTCATCGGATTTTTTGAGTTTTACCAACCG 3982 29 100.0 32 ............................. GTCTCGCGCCGCGACGCTAAAGCGGTGGGCCG 4043 29 100.0 32 ............................. CATTCTTAGCGCTTGGCGTCGTGCGAGCTGGT 4104 29 100.0 32 ............................. ACGCGCCCTACGTCGGCTAATTCCTCAGCAGT 4165 29 100.0 32 ............................. GCTTATTAGGGCTTCCCCGTCAACAACGGACA 4226 29 96.6 32 ............................G ATTCGACTTCCACCGATCCGATGTTTGCTCAC 4287 29 96.6 32 ............................T CCTCTGCGATTCGTGTGCGTATGGAAACCCTG 4348 29 100.0 32 ............................. GTTGGCGAGGGCACCAGATACCAATGTCAAGC 4409 29 100.0 32 ............................. TCGTCCACAACGGCTAGGCTCTCGGTCTCGGT 4470 28 93.1 32 .....-......................T CATGTGAAGGTGATGGTCGAATGAGTGCCGGT 4530 29 100.0 32 ............................. CACGGCGTAGTTGGTAGGGGATGGTTCTTCAT 4591 29 100.0 32 ............................. ACGAGCGGTGGTCTAGCGTTCCTCCCCGCAGT 4652 29 100.0 32 ............................. CAGGTAAATAGTCGAGTTATCCGGATTCCTCG 4713 29 96.6 33 ............................A CAAGGCCACTAGACGCGTATTGCCACAGTTCGA 4775 29 96.6 32 ............................G GAGACCTGATGGCTAAAGCTACTGTGACTTTT 4836 29 100.0 32 ............................. ATCTACACCACACGCCGCACACACGAAATGCA 4897 29 96.6 32 ............................G AAGCCGCGACGAAAAAACAATAAATAGAGCAC 4958 29 96.6 32 ............................G TTTTACGGATGATTCCGAGCGTCCCAGTCGTG 5019 29 100.0 32 ............................. TCTCCCCAGGTCAGATAGAGGCCATCAGGGAG 5080 29 96.6 33 ............................G CAGGCCCCCACGTCAACCCCTGCCACGTCGAAG 5142 29 100.0 32 ............................. TGTGACGTCGCGCAATGGCAAGGTCTGGTACA 5203 29 96.6 32 ............................G TTGGCTGGTGCATCTTCGAATGGGATGTAGTT 5264 29 96.6 32 ............................G CGTCGGATGTGTGCGAGGGCTTCTTTTTTGGT 5325 29 100.0 32 ............................. ACAGGCGGTTGCGCTGATTGGACTAGGAATCT 5386 29 100.0 32 ............................. CTCAAGGCCAGAGCTGGAAAAGCCGACGCCGG 5447 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.3 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : AGATCGTTAAACCAATCTGCTTGCTTTGCGGAGTTTTCCCCGCACCAGCGNNNNNNNNNNNNNNNNNNNNNNNNACCAGCGGGGATGAGCCCAGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //