Array 1 268087-267465 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABDY01000002.1 Clostridium perfringens NCTC 8239 strain str. NCTC 8239 gcontig_1106202603774, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 268086 30 100.0 36 .............................. GCAACTAAATATATTGGTAATAAAATTGTTGCAATA 268020 30 100.0 36 .............................. AATAATCCCATGATACACCTCTGAAATTTCTATTAC 267954 30 100.0 36 .............................. ATTCTGTTTTGCTTAATAAAATAACAAGTATTAATC 267888 30 100.0 36 .............................. TGATTTGTACTATTATTGTATTTTTCTCTGTAATCA 267822 30 100.0 36 .............................. TCTTTAATAAATCTTCTACTGTTAAGAAGTTCATTT 267756 30 100.0 36 .............................. TTAACTGTAGTTTTCTTTACACAATCTTCACACTCA 267690 30 100.0 36 .............................. GATTTAAGATTAAATAAAAGTCCTAATGAGGGCGTA 267624 30 100.0 35 .............................. TCTATACCTAATTTTATTAATGTTGATTGTATTTC 267559 30 96.7 35 .............................C TAATTTTTCTCCAAATACTCTAATACTACAGTTGG 267494 30 96.7 0 ............................T. | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 99.3 36 GTTGAACATTAACATGGTATGTATTTAAAT # Left flank : TGTATTTAAACTGTTGTCCAAAAGACTTAATTCCTTCAAAATAATTAGTTGAACATTAACATGGTATGTATTTAAACGCTAGAAGTACTGTAGTATTATATCTGATTATTATTGTTGAACATTAACATATAATGTATTTAAACCATGCAATAACTAATTTAATATTTTCCATAATATAAGTTGAACATTAACATATAATGTATTTAAACTAATTTTTAGTACTTAAAACTAATACTTTCATTTTAGTTAAATATTAAAAGAGTAGTCTATTAATAGGAAATTAAATATTATTATGAAATTTTAAGTGTTCTAGTATTAATTATTTTACCAGTAAAAAAGATAGTGAGAATATGATCTAAGCATTGAAATAAGAGGATTTAAAGATTATTTCATTTTAGTACTTTGAAAAAGCGTGAAATACTGGTAAAATTATGATATACTTATTGAAATAACTAGGTTTTCATAAAAATCTAATAAGTTAAAATGGCTATTTTACAAGG # Right flank : TTTTTATTTTTGAAGATTAATATATCATATATATAAGAATTTCTATATTAAAATCTACTTAAAGTTAAGTTAAAAATCCATATATCCTTTTTTATCAGATAATTTTGTTTATACAGGATTATCTGATATTTTTTTAATTTATTAAAATATGTTTAAAAAGTATTATTTAATAATAATAATAATTTGTGGTAAAATACTATTGCAAGCAAAAAATGGAAGGAAGGTGTCGCACCTTGGGGAGTTTAGTTTTATGGGAGTTAGGTAAAAAGCAAACATACATTTTTAATAGCAATAAGCTTAAGGATGCTATAGGAGCTTCACTTATTATTAAGGATTTTTCAGAGGATTATTATAATAAAGGCTTAAAGGAAGAAAATTTTATAACAAGAGGTGGAGGAAAAACTATTTATTATTTTGAAAGCAAGGAGGAGTCTTTGGAGTTCATAAAAAGCTTAAGTTTTAATATTTTAAAGGACTATCCAGGCTTAGAGCTTTTAATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGGTATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 268378-268671 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABDY01000002.1 Clostridium perfringens NCTC 8239 strain str. NCTC 8239 gcontig_1106202603774, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 268378 30 90.0 36 ............TAT............... TTATATTATGGAAAATATTAAATTAGTTATTGCATG 268444 30 90.0 36 ............TAT............... AATAATAATCAGATATAATACTACAGTACTTCTAGC 268510 30 100.0 36 .............................. TAATTATTTTGAAGGAATTAAGTCTTTTGGACAACA 268576 30 100.0 36 .............................. AAAGGTGTTAAAAAGGAAAACTATATAGTTAAGGGT 268642 30 90.0 0 ............T.T...........A... | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 94.0 36 GTTTAAATACATACCATGTTAATGTTCAAC # Left flank : TAATGTTCAACGATTAATACTTGTTATTTTATTAAGCAAAACAGAATATTTAAATACATACCATGTTAATGTTCAACGTAATAGAAATTTCAGAGGTGTATCATGGGATTATTATTTAAATACATACCATGTTAATGTTCAACTATTGCAACAATTTTATTACCAATATATTTAGTTGCATTTAAATACATACCATGTTAATGTTCAACCCTTGTAAAATAGCCATTTTAACTTATTAGATTTTTATGAAAACCTAGTTATTTCAATAAGTATATCATAATTTTACCAGTATTTCACGCTTTTTCAAAGTACTAAAATGAAATAATCTTTAAATCCTCTTATTTCAATGCTTAGATCATATTCTCACTATCTTTTTTACTGGTAAAATAATTAATACTAGAACACTTAAAATTTCATAATAATATTTAATTTCCTATTAATAGACTACTCTTTTAATATTTAACTAAAATGAAAGTATTAGTTTTAAGTACTAAAAATTA # Right flank : CTACTGTAAAATAGCCATTTTAATTTTACCAGTATTTTATCTTTTTTTAAAGTTTTTAGTTAATTTTATTAATTAAGTTATAAAAAAATAGATAGACCAAGTGGATCTACCTATTCTTCTTTTATTTTATTAAAACTTTTATAATGTGCCAAAGTTCTACATATGAATTTTATCAGATAGTTAACAAATATGAATTTCACATCTTAAGCTAAATCAATTTTAGTCTATTTCTCTACAGCTTAAAACCCAACAATTAAGCAATCTAACAGTTTGATATGTCTTTTTAATCTCATATTTTCTCCCATCAATCATGGCAATTACAGGTGAAGTTCTTTTGATAAACTCAAAGGACAAACCATCTTTTCCACAGTATTTTGCAACTTCTAAACAAATATCCTCATCTGTTTTAGGTTCCACATCTAAATCAATTAAAAAGCCTTTTTTAAACATAAATTCTAATCTCCCTTAATAAAATTAATTTTTAAGTTTATTGTATTGAA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATACATACCATGTTAATGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [8-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-91.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //