Array 1 12574-15316 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ079727.1 Lactobacillus jensenii IM3 scaffold44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 12574 36 100.0 30 .................................... AGTTACGCTAACAAAAACAGCCAAGGTTAC 12640 36 100.0 30 .................................... ACCTTTACCAGTTAATGCGTTTAAATATAC 12706 36 100.0 30 .................................... TGAGTTTGAAAGCCATATAAAAAATGAAAC 12772 36 100.0 30 .................................... GCGGATTAGACTCAATAATTAAATTACCAA 12838 36 100.0 30 .................................... TGTCGTCTGGGTTTATGAGGGAGATGGGGC 12904 36 100.0 30 .................................... TTATCTTGAATTGTTTGAAGCCCTCCGAAT 12970 36 100.0 30 .................................... CTTTTTGCAGGGCGATTTTACTCAAAATAT 13036 36 100.0 30 .................................... TTCCAACTCCTCAACTGTAACTTCAACTCT 13102 36 100.0 30 .................................... AGCAATGCAACATGAGTGTGACGCAATGAG 13168 36 100.0 30 .................................... TACTGGGTTGATGAAGATAAGTACGCTGAA 13234 36 100.0 30 .................................... CAAACACAACTTTGGTTGATGGAACCAATG 13300 36 100.0 30 .................................... TTTCATTTTTTAAATCTTTCAAGCTAGTGA 13366 36 100.0 30 .................................... GCTTGTTTTGTAACAATGGCTCTCTCCCTC 13432 36 100.0 30 .................................... CAAATTAATGGCTAGTCCAGCACTTCAACA 13498 36 100.0 30 .................................... ACTCAAAATATTAGTAATGTTATGGTAAAA 13564 36 100.0 30 .................................... TTTTTGGTTACGATGATGGAATACCTGACT 13630 36 100.0 30 .................................... TATCTTTCTTTTGTATTATCTTTTTTTGTA 13696 36 100.0 30 .................................... TGGTGCAGAAGTATACGATAGCCCGAATAA 13762 36 100.0 30 .................................... CACTTTTATATTTTTAAGGCGTTGCCTATA 13828 36 100.0 31 .................................... TTTAGGAGCGCAGAGGTTGCAATACCTCCAC 13895 36 100.0 30 .................................... CATTCATATGGTTAACGTAACAAGTGCTCA 13961 36 100.0 30 .................................... TTCAAATTTAGATATTAGGAGGGCTATAGA 14027 36 100.0 30 .................................... CAAATATTCCCGCAGGGTTTATTAAAGAAG 14093 36 100.0 30 .................................... GCCTGCGCCTGTCCCATTGTCTAATTCACA 14159 36 100.0 30 .................................... ATTTCCCGTCGCAAGTGCTGACCCTTATGG 14225 36 100.0 30 .................................... TTGATTGACTCCACTCGTTTGCCCAGACGC 14291 36 100.0 30 .................................... AAAGTGGAATTTCAGTTGGACTCTTTACAT 14357 36 100.0 30 .................................... ATACCGTGGAGATTTGATTAACTGGTATAC 14423 36 100.0 30 .................................... TTCCTTTATTTAGCATCGAAGCCCTCAGAT 14489 36 100.0 30 .................................... ATCATACGTGAAATCAAGAAGTAGAGAGGC 14555 36 100.0 30 .................................... GAGTAGCCTGCTTAGTGCAATCACTGTATC 14621 36 100.0 30 .................................... CTTATTGTGCTTTTTGAAGTAGTCAGCATC 14687 36 100.0 30 .................................... AGGTGTTTTCCCAGAATTAGACCTTGATGA 14753 36 100.0 30 .................................... TGTCATGTAAGCACCGTGCTTTCTGATAGC 14819 36 100.0 30 .................................... TGGACATATTGTTGCTTTTAAAGCTGATAT 14885 36 100.0 30 .................................... AGACGGTGTAATTGCTAGTTGTGAAGAGGT 14951 36 100.0 30 .................................... TAGAATATCGTCCTTGTTGCTTTGGTTTAA 15017 36 100.0 30 .................................... TCGTTTTAGCTCTTTCAGGTAGTAACTCAT 15083 36 100.0 30 .................................... AGAATACATACGGCTCATCAATAATAGAAA 15149 36 100.0 30 .................................... ACTAGCAAAAGAATTTACTACTATCACTAT 15215 36 100.0 30 .................................... TAATAATGTAAGCTAATTAATAAGAAAACG 15281 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 42 36 100.0 30 GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Left flank : CACAAGATTGTCTTAATTCTTATCTAACTAAAATTATTTCAAATTTATTTGAGAATATAAGTGAAAAGCATCGGAATAGAATATTTGATAAATGGAGGCAACTTAGCACCGATATTCAAGATATAATCTTTATGACTGACTTACCAATTGAAGTCAATGAAAATGTAGATTTAAAAAAGTTATTTAAATTTGATGGAATTCATTTTGATGATTCTGTACTAAGTGATCCTTATGCTATAATTGAAACAGTTGTTAAAATTCATATTGAATGTAAATTGAATTCGGTTGTTACTTTTGCAAATGTAAGTCATTATCTTACAAAAGAACAACTGAATAACTTAATTACCTTTGTAAAAGAAGTAAATGTACCTTTGATATTAATGGAATTTTCATCTCCGAATTTTAAGGTTGTTAGTGGGGATTCAAGAGTCTGTTATATTGATGAGGATTTTGTCGACTGGTACTGATTTACAATCTGAGAAGCTGATGATAAAACGTCG # Right flank : CTGTTAAATTTAAAACTACGTATAACAAAAAGTTTTAGAAGGTTGTAAAACACTATAACTTATAGGAGATAAAAATGGAAGGTTTAGTATATGTTATTCTATTTATAGGAGCTTTTATATATTACTATTGTAAAAATAACCGTAAAAAATAATATGTTTTTAAAAGTTAGGAATTATCAATTTAACTCTGTATTGACTATAATTATTTTGAATGATAGCATAGCAAGAAGGGAGCTAAGCCTAGCTCCTAAAAAATTATTATTTAGTCATTTTATAAATTACTAATAGTTGAGTGATTATAATCAGTAATTTAATAACAATGTCTAAGCAGTCTTTTATAACGGCTATTCTATAGCCGTTTTTATTTTTGTGCTTTTTGTTTTAAAAGACTAGCGAATCCATGATTTAACGAACTCCGCTATTTGTATAGCGGAGTTATTTTTTCCTCTCAATTTAATACAAGTACCAAAGAACTTTGAAAATAATAGCAATTGGTCTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //