Array 1 676-244 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZG01000002.1 Streptococcus halichoeri strain P408 NODE_2_length_227912_cov_127.313554, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 675 36 100.0 30 .................................... TTAGGCTTCGTAAAGTCGGCAGCGCCCTTT 609 36 100.0 30 .................................... AAAATCTCTAAAGGTTTTGCTTGATGTCCA 543 36 100.0 30 .................................... AGTAAATAAAGACAAGTATCGGCTCCCACC 477 36 100.0 30 .................................... GTATTAAGTAGAGATTTATGCATTTCTTGG 411 36 100.0 30 .................................... GTTGGATAGAGCAGGAGACTTCTAATCTCA 345 36 100.0 30 .................................... TAAAATACAAATACACATTCGTTTGTAGGT 279 36 86.1 0 .............................TTG..CG | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.0 30 GCTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : CAAATGATGATAATATCTAAGTTTAGATTTACAATCCAGTTAATGGCGTAGCATAAAACAGTGACATGTACCCTTTTTACTGGACTAATCCAGTGAAAGGTTTTTTGTATGAAATATAATTATAAGTTTAAGTTAAATGCAGTAGAAATGTATCAATTAGGACAGTGGATTGATACTCCAGATCGTACTGGGGTCTTTTCTATGGTTACTACAGCCAAAATCGCTGCCGCAGAGAGAATAAAACAAAGGTGGATTCTCAAAATCAGTTCGCCTAGAAATTAATCTGAGAAAGCTGAAAAGCAGCGCAGAATTTTTGCTTACTACAGCAACTAACCCCAATATTGTTTGAGACTTAATCGGCCGCCAAAAACTTCTTAAGCCAATTGATTTCATAAGGTTTTTGCCGTATAATAGTGCTATGAAAGGGCGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : GAAGTGTTAGCTCCGCCTTTCCCCCTTTTGATTGCTAAAACTAAAAATAAATTTGAAAACCTCTTGACAAAGTGCCAGAAAGTGAGTATACTAAGAAAGTTGTCAGCTGATTAGCGCAAGTGTCAATAAAAAGTAAAAAAAGTTATTGACAAAGCCTTAAGAAGCTGATAGAATAAAGAAGTTGCCTCGCAAGAGGGGAAAGACCTTTGAGAACTGAATAAGACGAACCAAAAAGTGAAGAGGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 2 4233-3405 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZG01000002.1 Streptococcus halichoeri strain P408 NODE_2_length_227912_cov_127.313554, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4232 36 100.0 30 .................................... CTCTTTATCTTTAGTCAGCTCAAAAGTCTG 4166 36 100.0 30 .................................... GTGAGTCAACGGGTGTCTTTAAAAGCCTTG 4100 36 100.0 30 .................................... ATTAGATATTGCAAAATCAATCAAAAAAGA 4034 36 100.0 30 .................................... TCGTGCCAATATTTTGTATCAGTCCTAGCC 3968 36 100.0 30 .................................... ATTGGTACGAAGAGAATAAAGAAGGCCTTT 3902 36 100.0 30 .................................... TTCAACATAGAGGAATGACAACTCAAGAAT 3836 36 100.0 30 .................................... TCGGCATCTGATAAGGAATACTTACGTATA 3770 36 100.0 30 .................................... TAGCTTATACTATTAACACTTCTTTATACT 3704 36 100.0 30 .................................... TGTTCTTATACATCTTTGTTCCAATAGGGG 3638 36 100.0 30 .................................... AAAAAAGCTAAGATTTTCAGAAGTGAATGG 3572 36 100.0 30 .................................... AAAAAAGCTAAGATTTTCAGAAGTGAATGG 3506 36 100.0 30 .................................... TAACAGCACACAAACTAATGGTGGTACGCT 3440 36 94.4 0 .T.............A.................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GCTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : TTAGCAGCAACTATAACAGAATTAATCGCCTTTGAATGTCTAGAGAACGAATTGGACTTGGAATATGATGAAATTACTATCTTGGAACTTATAAAGGCTTTAGGGGTTAAGGTGGAAACACAGAGTGATACTATTTTTGACAAGTGTTTGGAGATTTTACAAGTTTTCAAATACCTGTCTAAAAAGAAACTCTTAATTTTTGTGAATTGCGGCTCCTATCTTACCAAAGAAGAACTCTTGAAGCTGAGAGAGTATATTGAATTATCTCAGCAAACGGTCCTCTTATTAGAGCCAAGAAGTTTGTACGATATTCCGCAATATGTTCTAGATGAAGACTATTTTTTGATAGCAGAAAACATGCCATAGTCTAGCTTCTAAAAACCTTGATTTCATAAGGCTTTTGCCGTATAATAATGCTATGAAAGGGCGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : GAGTGGTAAAAAAATGTCGCATCATGTGAGGGGTAACACGAAAACCAAAAATTTTGTACGACAAATACCTAGCACTTCACAAAAAATAAGACAAAGCTATTTATACAGAATTATGTATGTCTGAGAGTTTTTATTATGATACGCTTGATATTGCACTATTAGCTTTTACAGAGCTTTACAGAGAGGGTTCTTTGATTGTTGAACGAGGAGTTTTTAGCTGGTTTATACAGTAAGTGAGCAGTTTATACGTGAAATTGTATGCTATTATAGTACTATCAAAATAGCAAGAAGAGATAACTGTTTTTTCAATTGATTATATTTAGTCGCCAACTTTAACGACGATCAAACTTGTTATTTTATGGGGACGGTCCCCCGGCGGGGACCATTTATCCGTCATGGCTCAAAACGAGGAATGCTAATGGACGCATCAAGAACCGTCGCATGTGCAGAACAGCAGACTGATAATCTGAGGTGTTAGTTCGAATCCGGTTGACGAGGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 55739-55972 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZG01000013.1 Streptococcus halichoeri strain P408 NODE_13_length_56287_cov_135.386645, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 55739 36 100.0 30 .................................... TCTATGTAAACACAACCATACTGACCACCA 55805 36 100.0 30 .................................... TTTTATCCAATTCCCCACCTGCTTGGTCGA 55871 36 100.0 30 .................................... GCATTTAGTAGACAGCTGGACAGTTGATTA 55937 36 86.1 0 .............................TTG..CG | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 96.5 30 GCTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AACTAGCAACAGACCAAACGTTAATCTCCCGAAAAGTCCGTTGAAGCATCCCAGTAAGCAGTAAAAACTGAGAATATAAGAGCATATAAATTGCTTTGGGGATCGATACAGTGTCTTAGACCATAGTCCAAAGCGAGTATTTGTCATCCCCCGAATAGACAGAAAAAAAAGAGTCACGCTATCCAATTGTTCATAACTCTCCTGATAAATCGATTGCTGTCATCAATCAAGCCAAGCATTTGGAATACAAAACATCAGCCAAATGCTAGCATAGCAGCTGAGGAATCAGAGATTAGAGGCTTAATAAAAATTTTTGAACCTAAACTGAAAAGGTACTGACGATTAATCAGCCGACAACCATGATAGTTAGCCTTCTTAACGCATTGATTTCGCAAGAATTTTGCCGTATAATAGTGCTATGAAAGGACGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : AAGTGTTAGCTCCGCCTTTCCCCGTTTGATTGCTAAAACTAAAAATAAATTTGAAAACCTCTTGACAAAGTGCCAGAAAGTGAGTATACTAATAAAGTTGTCAGCTGATTAGCGTAAGTGTCAATAAAAAGTAAAAAAAGTTATTGACAAAGCCTTAAGAAGCTGATAGAATAAAGAAGTTGCCTCGCAAGAGGGGAAAGACCTTTGAGAACTGAATAAGACGAACCAAAAAGTGAAGAGGGGTTTATAAGCAGTATAGACTCCGTCAAAGCAAGAATAAATCTGTCAGCGGACAGCAAAGAACGAGTAAGTTCA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 387-153 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZG01000018.1 Streptococcus halichoeri strain P408 NODE_18_length_39958_cov_112.489142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 386 36 100.0 30 .................................... GATAATTTTTCACATTCAGGAAATGAAAGC 320 36 100.0 30 .................................... GTCGTTCATAAGAGTATGTGACTTTGCCGT 254 36 97.2 30 ...............A.................... CTTTAATAGGCAAGTTAGGAACAGTCTTTG 188 36 83.3 0 ...............A.............TTG..CG | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.1 30 GTTTTAGAGCTATGTGGTTTTGAATGGTCCCAAAAC # Left flank : GCTATCGTTCGCGGGGAAGGGCTCACGCAGATGAAAGGATGTAAATGTTCCTTTAAAAGCTATGCCGTGCTTAAAACCAGTCAGATAGTTCAAGTTAGCCAAATTTAAAGAATAATGATGTGATAGGTAAAGGGGAAATGAATGAGGCGGACCGTAAATTAGGCGATTTTTACTGTGCTTATCAAGGTAAAAATCGCTCATGCTCCGCCAATTAACCGTAGAGCTGCCGCAGAGAGAATAAAACAAAGGTGGATTCTCAAAATCAGTTCGCCTAGAAATTAATCTGAGAAAGTTGAAAAGCAGCACAGAATTTTTGCTTACTACAGCAACTAACCCCAATATTGTTTGAGACTTAATCGGCCGCCAAAAACTTCTTAAGCCAATTGATTTCATAAGGTTTTTGCCGTATAATAGTGCTATGAAAGGACGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : GAAGTGTTAGCTCCGCCTTTCCCCCTTTTGATTGCTAAAACTAAAAATAAATTTGAAAACCTCTTGACAAAGTGCCAGAAAGTGAGTATACTAATAAAGTTGTCAGCTGATTAGCGTAAGTGTCAATAAAAAGTAAAAAAAGTTATTGACAAA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTGGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //