Array 1 1197759-1198885 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038853.1 Pantoea vagans strain LMG 24199 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1197759 29 100.0 32 ............................. CCATGAGACCTTCTGATCTTCTACTCGATTTT 1197820 29 100.0 32 ............................. TTCTTGTGCATAAAGAGCATTGTGATAAGTAG 1197881 29 100.0 32 ............................. CTTAGCTACACATCTGCTTATCGCTACGGCCC 1197942 29 100.0 32 ............................. TTGCCCACTATCGTCGCAGCCACGGCCCTAAT 1198003 29 100.0 32 ............................. CTATTTCAGCCGCTGTCAGGTAGGACATAGCT 1198064 29 100.0 32 ............................. GCCAGCGGAAACAGCGGTGGTGGCTCACAGCA 1198125 29 100.0 32 ............................. TAACGCATTCTCCAACCAGTTATGGACGTAAA 1198186 29 100.0 32 ............................. CGACATTAATCACGCGCTCAGAAACAGCGATG 1198247 29 100.0 32 ............................. CATTAGTCCAAAATTTTATGGACACTCTCAGC 1198308 29 100.0 32 ............................. CGAGGAACGAACAGCTGGATCGAGGAAGCGTA 1198369 29 100.0 32 ............................. GCTGATGTGGGAGTGAAATTCATTCAAAAAAC 1198430 29 100.0 32 ............................. AGAGGACACCGCCTCTCCGGCTGTCATGCTCC 1198491 29 100.0 32 ............................. ATATGAGCGCACAAGAAGTCGCGCGTTTTGTT 1198552 29 96.6 32 ..................T.......... GAGGCAGCGCCGGACGCTCCCCGGCTACGCCG 1198613 29 100.0 32 ............................. CCTCAGCCTGGCGGTCGCCACTTATCAGGCAG 1198674 29 100.0 32 ............................. GTTGGCAGTATATCGGCGCGTTTCTGGTTAGT 1198735 29 100.0 32 ............................. ACGGCACGATGGATGTTGAATTTACTGGCGAA 1198796 29 96.6 32 ............T................ TTGTTGGCATCAGCCAGCGCAACTATGCCTAT 1198857 29 79.3 0 A........A...A...C.C........T | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATCCTGAAACAGCAGAGCGATCCATACGCCTTTATCCGTAACGCCTACTTCCAGCGGCACGACTTCCTGGCGCGTGGCGGTAAGCTCAAGCCGGAAGACAATCCTAACGCAGCCGCGATTCAGGATGACCTGAAGGATATCGATTCGCAGTAATGTCACGGTCCGTAAAAGGGCGCGACACAAATTTGTTGCTAACGTCTGCCCCGGTCTGCTGTAAGACCGGGGCAGAACAGAGTACAGGTTCAGCCTTTCCCTGACCGCCCGATTCTCGTTATTCATGCTACGGGACGGTTCTTTCCTCTGCCTTACTTCTGACTTTATCCGTAACAACCTTTCCAGTTTGAGACTGCTATTAACCTTCTGTCTTCCAGTATGAGCGTATTTTTTCGACAGATTTGGTGTCAGAGATTAACTGTTTATAGGGGCCAGATGCGGATGTAAAATTCAGTGGAATTTTCTGGTATGAAAAAGCGCTTTGTAATCAGTTGGATAAATTTAGA # Right flank : TGTAATGGGAGAGTCCGGGAAAGGTGAGGATAAATCTTCTATCTGCGAGCGTTGATAAACTATGGTGAAGAAAGGCGTCGGGGAGTGAGAATCTCTGAAACTCCGGCACCTGCCGGGAATAAGCCGGAATTGGTGAGCAGTCTGAAGGCGACTCACCTGAGTCGCCTTTTTTTAATCTCGTCCCTCGGTCAGAACTTGTAGTTAAAGTTCGCGCCGTAAAGCCAGGCCTTACCTTCAGAGGTAAAGGTATAAGGACCTTCTTTCACCGTCACTTTCTGGCCATGCATATAAGAGATGCCCAAATCGACCGAGGCATCATCGTTAAAGGCATACGATGTACCAGCACTCAGCCATAAACGATCCTGGTCCGGAATAGAGATAGAACGCTTGTCAGCTGGTACCGGGCTATCATCAAACGCGATACCGGTGCGGAAAGTCCAGTTCTTGTCGTAGGAATAGGTGGTGCCCAGGGCAATGCGGTAAGCATCGCGGAAGCTTTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3173202-3172624 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038853.1 Pantoea vagans strain LMG 24199 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3173201 29 100.0 32 ............................. GCCTGTCCCGCGCCGCGCTCATCCGCATGGCC 3173140 29 100.0 32 ............................. GAAATAAAATGGCAGAAATTACTGCTCAACCG 3173079 29 100.0 32 ............................. ACGAGAGAGGAGTTTAACAGATGGAAAATCAA 3173018 29 100.0 32 ............................. TGAGAGGCATCATAGTATCGCTCTAAATCATA 3172957 29 100.0 32 ............................. CGCCAACGAAACGCGTAATTCAATAATCAGCT 3172896 29 100.0 32 ............................. GAGCAATTGAAATGGCAACGTATTCATTCCTG 3172835 29 100.0 32 ............................. CCGGTGAATTTCGATGCACTTTTTGCGGAACA 3172774 29 96.6 32 ................T............ AAATTCTGATAGTAACGGATCCACCTGTTGCA 3172713 29 100.0 32 ............................. GGCTTGAGGGGATCATTGTGTTGGGGAAAGTG 3172652 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTAGACCTGGACCTTATCCCGGCCAGCGACTTCGATGAGAAACCGGTAAAGCTGAGCGTCTGATAGGGTGTTTCAGAGGAAAAGGGCGAGTGGAAACACTCGCCCTTTTTTTGTCAAAATCTGGCCTGGCTCGCTGTGATACCGGGGCTGCGAAAGGAGCACGGTCAGAGAGGAAGATGTTAACGTCAGTCTCTGACCGTTCGTTCCGCACAATAATGTACCCCATCCATCTATTGGGTTCGTAGCCGGGCCAGCGCTACCGGCGTTTTTTCCGGGTGGCGGGATGTTTCCCTCTTTTCCGTACTCATTGCGTTTATACGTTGCTGCAGGATTCACTTTGCTGTGGGGTTGCTAACCCCTTCAGGCTTTCGTTGCAGGCGCTGTTTGCGCCAGATTTTGTACCGGAGAATAAATGTGCATTTGGGGTAAATCCGGGTGTAAAATTCGGTGGAATTTTCAGGTGTGAAAAAACGCTTTGTAATCAGTCGGATAATTCTAGA # Right flank : TGAGGATGATGTGGCAGCGGCAGCAGCGCTCTGTGTTCCCCACAAAAGCGGGAAGAGCCAGCCTTCGTCAGCACTCTGTGCCTGAAGCCTGGCTCCGCCCATGCTGTGTGGCCTGCGCCTCAAATCAGAACTGGTAAGTCACACCCATCGCCACAATGTCGTCGTTGTTGATCGACAGCGCGTTGTCATCATCCAACTGGTTGATTTTGTAATCCACGAAGGCGGACATGTTTTTGTTGAAGTAGTAGGTTGCACCCACATCGATATATTTCACCAGATCCGCATCACCGATACCGTTTTCAATATCTTTGCCTTTGGTCTGTACATAGCCAATAGAAGGACGCAGGCCGAAATCAAACTGATACTGTGCCACCAGTTCGATGTTCTGCGCTTTGTTGGCTGCGCCCGCGACGGCAGCGCCGGTATTACGGTTGGTGCCGCTGATTGGCGTCATGTTGCGGGTATCGGTGTAAATCGCCGCCAGGTAAACGCTGTTGGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //