Array 1 429306-428604 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLI01000003.1 Akkermansia muciniphila strain GP14 scaf-3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 429305 33 100.0 34 ................................. CGGATGAATTCCGCAACGAACGGGCTGCGGTGCA 429238 33 100.0 34 ................................. AACATGGTCCGGGTGCGGGCTTCCGTCTGACCGA 429171 33 100.0 34 ................................. TTCATCATAATTTTTCACCGCTTCTCCGGCGACG 429104 33 100.0 34 ................................. GGCACATATTTTTTTTTACGGAACAGCGGGATGG 429037 33 100.0 34 ................................. CTTTTTTTTCTGCGCCTGCGCCGCCCGCTGAACT 428970 33 100.0 35 ................................. CAAACGGGTTGTGATAATCACGCAGCATTTCCCTA 428902 33 100.0 33 ................................. CGGGAATTTCCGGTGGATCTGTCAGCGTTTTTG 428836 33 100.0 33 ................................. CTTTTGCTCCGAAAGTTGCTTGGCCGGGATGTT 428770 33 100.0 34 ................................. CCCATCCACTCGTAAAGCTTCGCGCCGGCAAGGG 428703 33 100.0 34 ................................. CTTCTGACGGGCCACAACCTCCGTAGCGGTCATT 428636 33 93.9 0 ..........G...............C...... | ========== ====== ====== ====== ================================= =================================== ================== 11 33 99.4 34 GTCGCACTCCACAAGGAGTGCGTGGATTGAAAC # Left flank : | # Right flank : ATGACGAGGGCAAGCTTCGAGAAGATGCCTCCCGCCGTACTCCCTGGAGAGTACGTAACTTATCTGGAAAAGAAAAAGCTCTCCAAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCCTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGTGGTGCAGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGCGCTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCCCCGTCCTCGTCCCGGAAAACGCGGGCTAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCACAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1139-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLI01000001.1 Akkermansia muciniphila strain GP14 scaf-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 1138 33 100.0 36 ................................. CGTCCACCGCGATATGGTGGCGTCGTCAATGCTCCG 1069 33 100.0 35 ................................. ATCCTGGCATCAGGCGCGGGATTATAATAATATTG 1001 33 100.0 36 ................................. CGGAGATACCGGCGCATTTCAATCCGGAGAAGCTTC 932 33 100.0 34 ................................. TGCACCTGCCTTCCGGGAACGAGGGAACTATCAC 865 33 100.0 34 ................................. CAAAACTGCTTCCGGCCATTGAAGCCCGTGCCCT 798 33 100.0 34 ................................. CATTCGGAAAACTTGTAACCGTACTGAAAGATGA 731 33 100.0 34 ................................. CGCAAACACGAAAAAGAGCTGATTGCCGCCCGCG 664 33 100.0 35 ................................. TTCGGACAATACTTCCGGGCCGCCCGGTTCCATCG 596 33 100.0 34 ................................. GAAACCCGCCGTTTCCTCGGTTTCAATGGCATTG 529 33 100.0 34 ................................. ATCTACTGGCCCGGCGCTTGACGTGGCAATACGC 462 33 100.0 34 ................................. GAATCGTTTAAGCAGGGGGAAGCCTGGAACCTGG 395 33 100.0 38 ................................. CATTTCCAGCAGGGATTCCGCTCTGGTACGGTCAACCA 324 33 100.0 34 ................................. CATTGTCTCCATGCGGTAGGAGAACGCAGCCCAG 257 33 100.0 35 ................................. CTGCCCCTGGGAAGCGGACGGATGATGCGGGTCGG 189 33 100.0 35 ................................. CCGTCATCCGGAAATCGGCATCATCCGCCTGTACC 121 33 100.0 34 ................................. CGGATGAATTCCGCAACGAACGGGCTGCGGTGCA 54 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 17 33 100.0 35 GTCGCACTCCACAAGGAGTGCGTGGATTGAAAC # Left flank : CTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGACAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGCCTCCTGCTCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGCAATGTATAAGGTCGGGCGCA # Right flank : CAACATGGTCCGGGTGCGGGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCACAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 10945-9610 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLI01000001.1 Akkermansia muciniphila strain GP14 scaf-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =========================================== ================== 10944 31 100.0 34 ............................... CTCCCGGCTGTCCGACGACATGCGGGCCATGTGA 10879 31 100.0 33 ............................... AAGGACGGGGTGCCCGTCACGTCCGGCGCTGGC 10815 31 100.0 43 ............................... CAGAAGCGGATGCCTGTGTCGCTGTTATGCCCCAGTTTATTGA 10741 31 100.0 33 ............................... CAGAAGGACGCTTGTCAGGCAGGCGAGATTTAG 10677 31 100.0 34 ............................... AAGTCGTTTATTGTATTCCCGCCCGGTGAGATGC 10612 31 100.0 34 ............................... TATTTTGGCGGCCAGAGCGCACACGGTATCATTG 10547 31 100.0 34 ............................... ACCGGTGCTGTCGCAATGGCTGTAGAGGGTGGCG 10482 31 100.0 35 ............................... AATTACTTCCCCTTGTAAATAGGGGCGATTAACGC 10416 31 100.0 34 ............................... CGCACCTTACCCCATATCAGGGTAATGTACTTGG 10351 31 100.0 34 ............................... TTTGATTTTCAATTTTTTCCATCTCACCCACCGC 10286 31 100.0 33 ............................... ATCACCAACTCCGGGGACGCGGAAATGATGAAA 10222 31 100.0 34 ............................... CTTGAAATCCAACTCCTGAAAAATCTGCATGGCT 10157 31 100.0 33 ............................... TACCGACGCCTGATGTCTGTGGCAGACGATTAC 10093 31 100.0 33 ............................... CCGTTCCAGGTCTGGGACTGTAGCTCCATACCG 10029 31 100.0 34 ............................... CACTTCAAAGCCGCCCCATGGCAGGAACAGCCCT 9964 31 100.0 34 ............................... ATTGCTGGTGCAACAAAAACCGGCCTCAATATAA 9899 31 100.0 33 ............................... AAGGCTGTCACGAAGGCCGGAAATTGTCACGGA 9835 31 100.0 34 ............................... CGGCCTGTATCCCTGTCCGAACTGGACAAGGACA 9770 31 100.0 34 ............................... TGGCTGTTCAGCACGCCGCCCGCGGACGATACGC 9705 31 100.0 34 ............................... CTTTTTCCGGCTCCTTTCCGCAATGCGCATCAGG 9640 31 90.3 0 ..........................T.G.T | ========== ====== ====== ====== =============================== =========================================== ================== 21 31 99.5 34 GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAGAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCTATCCCGGGGTGCCTCTTCTTTTGTGGAAAACAGAATAAAACGGTTTCCGGGGAGAGTCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTTCCGCATCGTGCACAGGCCTTGGTTGCCGGAGATGCAGGCTTTTTAACGCATGAAAAGCTTCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCCGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTAAGGCCTGGAGTCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGATAATCAGTGCCATAGCCGCCCCGGA # Right flank : GTCGTAGATTGAACGGCCTAATATCCCTAGAACGAGAAGGAGCATTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGATTTCAATGGAGTGGTGGACTTTCGCAGAAGAGTATTGACCACTTTTACAGTTATGCTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGAGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGCACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTTCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 559321-560716 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLI01000001.1 Akkermansia muciniphila strain GP14 scaf-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 559321 31 100.0 34 ............................... GGATTCCCCTGCCGCATCCAGCACTTTTTTAATG 559386 31 100.0 34 ............................... TTGTTATCAACTCTTCTCCGGCAACGACAATGGG 559451 31 100.0 34 ............................... ACCATGCCCCGGTCGGCGTCGGAATTGTAAGCAT 559516 31 100.0 34 ............................... TTTGTGCCTGATGCAGATTCCTCCTCCCCCCCCC 559581 31 100.0 34 ............................... AATGTCCGCAGGTCTGTATTTAACCTCACGGGTC 559646 31 100.0 34 ............................... TCCAGCATGAACTTTACGCCATGTGCAGAGGGGA 559711 31 100.0 34 ............................... ATTATGCTCCTCAAGGGAAGCCTTCTTTACGCCT 559776 31 100.0 35 ............................... CGTGGGAACTGGCGTTGGACGTGTACTGGAAAAAG 559842 31 100.0 35 ............................... CCCGGATTCCCTGGCAGTCCTTGATTTCGAAGGGG 559908 31 100.0 34 ............................... CTCTTCTTCCTGCATTTCCGGTTCCGGCTCTGTT 559973 31 100.0 34 ............................... GTCAAGGTTTCGCTCCTGCATGTTGTCATCGACA 560038 31 100.0 34 ............................... CAGAAGGACGCTTGTCAGGCAGGCGAGGTTTAAT 560103 31 100.0 34 ............................... TTCTTCCCGCCGGATTAACAGCCCGTTCAGGCCC 560168 31 100.0 34 ............................... ATACCGACGTGCTCCATTTTCAAAAACGCCCGTA 560233 31 100.0 33 ............................... GGGTTCCGGGTAAGAATAATCCCCAGCGCAACC 560297 31 100.0 34 ............................... TCCAACAACCCTATAACAATATAAACATCATAGA 560362 31 100.0 34 ............................... TTCGCAAAGCTCTTCAGCTTTCTCCAGGGCCTTG 560427 31 100.0 32 ............................... ACGATAGCGGAACCTCCCTGCGGGGGCAACGC 560490 31 100.0 35 ............................... CAGATTCCGGAATCCCGCAGCCGCAGGAGGTAGAA 560556 31 100.0 34 ............................... TTCTCATCCTTTTGAGTGATGTTTCGCAAGATCC 560621 31 100.0 34 ............................... ACGTTGATTTCCCGGTCTGTCAACTACGACGGGA 560686 31 87.1 0 .........A......C............GT | ========== ====== ====== ====== =============================== =================================== ================== 22 31 99.4 34 GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGAGGAAGACAGGTCAGTTGACTGCCGTTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAAAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCTTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCATCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //