Array 1 1339403-1338257 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085925.1 Campylobacter fetus subsp. testudinum strain FDAARGOS_1591 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1339402 30 100.0 35 .............................. AGAGAAGCAAGGCTTAAAAATGTTCGCAGATGGTG 1339337 30 100.0 36 .............................. ACTACAGGTACATTTATAACATCAAATAATAATTTT 1339271 30 100.0 36 .............................. ATACTTGTTAGGAAATTTGACTACGCTAAAACAAGA 1339205 30 100.0 35 .............................. AGTTAAAAAAATGAGAGTAAGCCGTTTTTTGTAAT 1339140 30 100.0 35 .............................. AGTCCTCCATAAATGAAAACGAAATGGCTACATAT 1339075 30 100.0 36 .............................. AAAACTATTTTGAGTTATATTTTATGCCTATTTTAA 1339009 30 100.0 36 .............................. AGAAATTTAGTATCGATATAATCGCACCTATACACG 1338943 30 100.0 36 .............................. ACTCCAAAATCCTCGCCCTGAACGCTGCTAAAAGCT 1338877 30 100.0 36 .............................. AGCCGATGAGCAAAGATGTGGCGGGTAAGATACTGG 1338811 30 100.0 36 .............................. GGGAGTAAAAAATATTTTAATTTTACATCCCACCCA 1338745 29 96.7 37 .....-........................ TTTAATTTTATGCTATCTTTTAAACTCATTTAAATCT 1338679 30 96.7 35 ....A......................... TTTGCCATAACTAAGAGCATATTTTTTATATTCAT 1338614 30 100.0 36 .............................. AGTGGGGGATATCGTTAAGCTCAAGAGCCCAACACA 1338548 30 100.0 37 .............................. TCTTTGCTTACAGAACATTGTATCCCTTACTCTGAGT 1338481 30 100.0 36 .............................. TAAGTAATGTTTTTGGTGTTGAAGATGACTATGACG 1338415 30 96.7 36 ...............G.............. AAGTCTGCTTTAGTGGATCAGATAATAAATAATTAT 1338349 30 93.3 33 .........................A..T. CCCTAATATAGCTATTAAAGGCTATCATATTTA 1338286 30 73.3 0 ....A.....C....AG...A.A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 18 30 97.6 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TATCCCTCATTTTCTTACATTTTTCCTTTCATTTTCTCTTATATTTTTCTCATATTCTCATTTATCTAATTTATCATTTAAATTTAAATAATCAAATTTAGATAATCAAAATTAAAATTTAAGTTCAAATAATTTAAATTTAAATTATTAAATTTAGATAATTAAAATTCAAGTTCATATTAATAACACTATTTACACACCAACAATCACAAATTTATATTTTATATTACATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAAACATAGATAAATAGTTTAAATTTAATGTTTTTTATGATATTTAACTTATTATTGTTATTTTTTAAATTTAGATTGGAAAATAAATTTATTTTTATTATTTATAGCTATATTATATATAAAACAAATAATCCATTTTAAATAGTTTTAAATAGTTTTTTAAATTTATTTCTTATTTCAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTATG # Right flank : CATATAGAACGCTAAAGCAGAAGATGAGCTTTTTAGACATATTGATAGTATGGGTTATGAAAAAGTTGCTAAAGCAGATATCTATACACACGGACAAAGCGGATACATTAAACCCAGTAAAATAGAACTGATATCTGCTATGAATAATATTAGCAACCTTAAAACTAGTATTAACAACCCTATAAGGCAAGTTGCATTAAGTGGAAAAATTATCATCATATATCAAGATGAGAGAATTTGGACGGTTATTAAAAAAAATAGCGAAAAACAAGCAAAAGAGTACTTTAAAAACAACACGGAGAGTAAAATATGGAAAAGCGAAAGTTATATATTTGCATTGATGAAAAAGGCTGGCATATCACAGATGATAATAAAAAAAATAGTTGGTTAAACGACGATGAATTAGATGGAAGTTTTGCAGAAGTATTTGGCGTAAATGGCAAAATAGGCTTTTTAGGAGAGTGGGCGTGGAATGATAATTTTTTAAACTTAACAAGCGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 1351668-1349862 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085925.1 Campylobacter fetus subsp. testudinum strain FDAARGOS_1591 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1351667 30 100.0 36 .............................. AAGTAACTACGCTCTTGATAGCTTTAAGGCTCTAGG 1351601 30 100.0 37 .............................. TTCGGCTAGGTCTACCGTTGGCATTACTTTAAAATTT 1351534 30 100.0 35 .............................. GAAAGATACTTACCATTAGGAGAATAGTCATTGCT 1351469 30 100.0 35 .............................. GAAAGATACTTACCATTAGGAGAATAGTCATTGCT 1351404 30 100.0 35 .............................. ATGTCAGAGCATTTATAAAAGCCTAAATTAGGCTT 1351339 30 100.0 36 .............................. TCCAAAAAAATGCTAAAGCTTTCACTACTTGGAAAA 1351273 30 100.0 36 .............................. TTTCAATCCACTTTAAAACTCTATTTTTAAAAAACT 1351207 30 100.0 36 .............................. TTTGCAGACTGCTGTCGTCCAGCTCTGAAATTTTTC 1351141 30 100.0 36 .............................. TTGTTAAGTCCCAAAAATCCGGACTTTTAGTAATAC 1351075 30 100.0 36 .............................. TCAAAATTCGCCGTATCTTTGGAGTTTGGCGGTTCT 1351009 30 100.0 37 .............................. AAATTTAGCAGGTTTTATAGGACATTGCGTTGTGGAA 1350942 30 100.0 36 .............................. TTGATGAAAATGGCGAGAGACTTTTAACAAAGGCGG 1350876 30 100.0 36 .............................. TTGATGAAAATGGAGAGAGACTTTTAACAAAGGCGG 1350810 30 100.0 35 .............................. TCTTGGCTTCCATTCCAAAAGACCACATTAGCCAT 1350745 30 100.0 35 .............................. AGGCTTAATACAACTTTTAGCAATATTATTATAAA 1350680 30 100.0 35 .............................. TTTTTAAATCAATATTCTTATTTTTAATTTCGCTT 1350615 30 100.0 36 .............................. GCGGCATCTTTAATGGCTTTTTTATATGTGTCTAAA 1350549 30 100.0 36 .............................. GCAAATTCTCTAGAAATAGAAAATCTTTTTCTACTC 1350483 30 100.0 36 .............................. CTTTGAGCATTAGTAATACTCTTAGAAGTAGTAAGA 1350417 30 96.7 35 ...............G.............. GCTGTTTTCATCTTGTCTCCTTTTTTTCTTAAAAT 1350352 30 96.7 35 ...............G.............. ATGATACAAAGCGTGGTTGGTAGATATTATATTTC 1350287 30 96.7 36 ...............G.............. TCATAGAATGTGTTTTTATTGTACTTTCTAGCAGGT 1350221 30 96.7 35 ...............G.............. TAGCAAACGCACTTTTAAAGGCTGGAGACGCTATA 1350156 30 100.0 36 .............................. TAGTTAGATTTGCGTTCTATTTTATAGATAGTAACG 1350090 30 96.7 37 .........................T.... TTTTATATCTAAAATCATCGCTTAAATGACGTTTATC 1350023 30 96.7 36 ...............G.............. AGAGAAGTTTCGAAATCGACTTCTGTTTTAGCGTCG 1349957 30 100.0 36 .............................. CCTTGATTTTTGTATAGAGTTGGTTTTATGTCAATC 1349891 30 73.3 0 ..........C....AGC.C..A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 28 30 98.3 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TTTTTGGGATTATAAAGATATGTTTGTATCCGACTTTAGGCGGTCTGGATTTTGTTAAAAATGAAATGTTTTTATAACTATCCCTCATTTCCTCACATTTTTCCTTTCATTTTCTCTTATATTTTTCTCATATTCTCATTTAAATTTAAATAATTTAAATTTAAAATTTAAAATTCATATTAATAAAACTATTTACACACCAACAATCACAAATTTATATTTTATATTACATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAAACATATATAAATAGTTTAAATTTAATGTTTTTTATGATATTTAACTTATTATTGTTATTTTTTAAATTTAGATTGGAAAATAAATTTATTTTTATTATTTATAGCTTTATTATATATAAAACAAATAATCCATTTTCAATAGTTTTAAATAGTTTTTTAAATTTATTTCTTATTTCAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTATG # Right flank : CACATAGAGCTCCAAAGTAGCAACATTCAAAATGCTAAAAACATAAATGAGAAAAAGGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAACAAAGATGAAGCAGTTAAGCACATAGACAAAACTGGCGTTGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAAAAGCACGACACAGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAGGATAATAAATATATAAACGCCTTTAGTGACAATGGGTATTTTATAGTTTTTAATGGTAATGAGATAGTGACTTGTTATAAGCCTAGCCAAAATAAAAAAGAGGCATTTGGTTACTTTAAAAATGCTTCAATATA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 1356169-1357774 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085925.1 Campylobacter fetus subsp. testudinum strain FDAARGOS_1591 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1356169 30 100.0 35 .............................. AAAATAAGAGAACACGAGGCCGATTGTGGTGGAAC 1356234 30 100.0 35 .............................. CTATTCTTTTTAAAGCTTCATCAACATAGTTTTTT 1356299 30 100.0 37 .............................. CTATTTTGCACACTCAAATTTAGCGTTTTTGGGTTTA 1356366 30 100.0 36 .............................. CAATAATCTTAAGTTAAAACCAGCAATAAAACTTAC 1356432 30 100.0 34 .............................. AAAATATTAAGGGTGTTCCCAGCAGAGATAAATT 1356496 30 96.7 35 ..............C............... TTTTGCAGACGTAGAGGGCGATCTAATAATCGAGA 1356561 30 96.7 36 ..............C............... AGCCAAACAGAATGCTAAAGAAGCGTATAGTAAAAT 1356627 30 96.7 35 ..............C............... GCCATAGCGCTACCGATAAAAACAGCTATTGACTT 1356692 30 100.0 36 .............................. AACAAGAAATTTATTTGAAGAGTTAGGAGAGTACGC 1356758 30 100.0 36 .............................. AACACCAAAATAGGAGTTTATAAATATAGCTAATTT 1356824 30 100.0 36 .............................. AACACCAAAATAGGAGTTTATAAATATAGCTAATTT 1356890 30 100.0 36 .............................. ATCATTTGCTACATTTTCTTCAAAAATCTTATCATC 1356956 30 100.0 37 .............................. ACACCAAATAGACCCTAACATAAAAGCAGTAATTCCT 1357023 30 100.0 36 .............................. GGAGTGTCTGCAAGACGCATACATTGCAATACAAAC 1357089 30 100.0 36 .............................. AAAAGGTATAGATGATATCTTAGCTGCATTAAAAGA 1357155 30 100.0 36 .............................. CGTTAAAACTTCAAAGACTTTCAACGAAATTTCCGT 1357221 30 96.7 34 ..............C............... TTAAAGTAGGTGCGGAATGCACGTACGCTTCTTT 1357285 30 93.3 35 A.............C............... TAGCCATTTCATTCTCGTTTATAGAAGGCTTAACG 1357350 30 100.0 36 .............................. TATCAGCAGAAACTAGAGAGCTGTTAGTTCTTTATA 1357416 30 100.0 36 .............................. AAAAGGTATAGATGATATCTTAGCTGCATTAAGAGA 1357482 30 100.0 36 .............................. ACTATCCCACGGACAAATTAGCCGCAATCTATGCTT 1357548 30 100.0 36 .............................. ATCAACAAATTTAATAAATCGAGTTGTAAATATTTT 1357614 30 100.0 36 .............................. AAAATTATTATTTGATGTTATAAATGTACCTGTAGT 1357680 30 100.0 35 .............................. CAAAAAAGAGAGCGACAAGATGTTTTACGAGGCTA 1357745 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 25 30 99.2 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTCAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGCTCTAATGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTTATAAAGTGTATTTTCAAGTTGGTTACTTAGAAGTGGTAGAAGAGGCGTTCGACAA # Right flank : CCATAATAAACTCATCATCTAATTAAATTTAAAAAGAAATTTAATTAGAAATTGAAATAAGAAATAAATTTAAAAAACTATTTAAAACTATTTAAAATGGATTATTTGTTTTATATATAATATAGCTATAAATAATAAAAATAAATTTATTTTCCAATCTAAATTTAAAAAATAACAATAATAAGTTAAATATCATAAAAAACATTAAATTTAAACTATTTATCTATGTTTTTTAAAAGTTTAACTAAAATTAGGTTGGAAAAAGCTTAATGTAATATAAAATATAAATTTGTGATTGTTGGTGTGTAAATAGTTTTATTAATATGAACTTGAATTTTAATTATCTAAATTTAATTATTTAAATTTAAATGAGAAATTAGATAAATGAGAATATGAGAAAAATATAAGAGAAAATAAAAGGAAAAATGTGAGAAAATGAGGAATAGTTATAAAACCCTCTGGTGCCTAAAGTCGGACTCGAACCGACACACGGTTTCCCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //