Array 1 7473-2870 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOIB010000016.1 Clostridium perfringens strain 1803-15 NODE_16_length_66689_cov_139.405, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 7472 29 100.0 37 ............................. TTGGAAAATGCTTTTAGAAGAGTATGACAAACCGTGC 7406 29 100.0 37 ............................. CAATTAAAATATTTTTTAACACTTACTTATAAAGAAA 7340 29 100.0 36 ............................. TAAATAGATAATAATTTTTCTTTAGAAACACATTCT 7275 29 100.0 36 ............................. CTTACTTATTGCAAGTACAACACTATATGGCGGTTA 7210 29 100.0 36 ............................. GTAGAAACTGAAACTGTTAAAGTGTTTGAATAGCAC 7145 29 100.0 36 ............................. TAAAAAGCGTAAATATAGGAGGTAAACATGGAGAGA 7080 29 100.0 37 ............................. GGTTATGGGAAGAAGGGTGCAGGTTTGGTAAAAGATC 7014 29 100.0 36 ............................. GGATTAATTGTAGCTACTATATTAGAACTTGTATTA 6949 29 100.0 36 ............................. GATGAAACTTGGTATTACAGAGCAAGAGCTGTTAAT 6884 29 100.0 36 ............................. GGGAGTTTTTAATGCAGATATTAAAATAGTAGGTGA 6819 29 100.0 36 ............................. TTAAAGGTAGCAGCTTTAGTAGTTATTTTGATTTAT 6754 29 100.0 36 ............................. TATCAAAGAAGAAATCGCCTGAAACTAGTTTCAAAC 6689 29 100.0 36 ............................. TAGCATTTTCATGTATTAAATACTTCAACATATCAG 6624 29 100.0 36 ............................. CGATTACAACTTGAAAAAATTGAGTTACAAAAATAA 6559 29 100.0 37 ............................. TATGTAAACAAAATACTAGAGCTACAATGTGATTTTG 6493 29 100.0 36 ............................. GAAGAAAATAAACCTGCTGAATCTGTGGAACATATA 6428 29 100.0 36 ............................. GTGGCAGAAGTTTATATTTTAAGGCAAGTAAAACAA 6363 29 100.0 36 ............................. GTGGCAGAAGTTTATATTTTAAGGCAAGTAAAACAA 6298 29 100.0 37 ............................. GTACTTATGGCTTTAGGAGCATTTGTTACAGGAGTAG 6232 29 100.0 36 ............................. TTCTTTAAAAAAAAATAACAGCTATGCTACGGCTAT 6167 29 100.0 36 ............................. CCATTTAGTTCATTTATTTTCGCAACAAAATTTTTT 6102 29 100.0 35 ............................. CCAGGAGAAAGTCAATTAATAATAAGGTCTGATGA 6038 29 100.0 37 ............................. TTCTCGAACTCTCTATTCCTCCCCAAGCACCTCTCAT 5972 29 100.0 36 ............................. TACCAACAGCCTCAACATTCTTAGGACTAATTAACA 5907 29 100.0 36 ............................. GGAAGTCCGAAGAATCCAAAAATACCGTACAAATGT 5842 29 100.0 37 ............................. AATTAGATAATATGTGCATATGCCACGCACCTCTTTT 5776 29 100.0 36 ............................. TACTTTATCCTCAAAGTATTCCTGGTACTTATCACA 5711 29 100.0 37 ............................. GCATAAATCCAGAAATGGCCTTTATTCACAAAAGTAT 5645 29 100.0 36 ............................. GAACAAGAAATTAAAGAAGAGTGGTACAAGTAATGC 5580 29 100.0 36 ............................. TTTTAATAGTATAGGAGATGAATTAGAATGAGAAAG 5515 29 100.0 36 ............................. TTTAAATTTATTGGAACATTCTTTGTATTATAAAGC 5450 29 100.0 36 ............................. TAGTTTGGTTAGGAATACTAAAGATGGTGTAAGTGG 5385 29 100.0 36 ............................. ATTTCATAGGCTTGGTAACGCTTTAATATATCTGCT 5320 29 100.0 36 ............................. ATTCCAGGAATAGAACCACTCTCACTATATTGCCAC 5255 29 100.0 37 ............................. AGGAAAAACTGATGCAATAGAAAATTATCAATTTATT 5189 29 100.0 36 ............................. TAAGCATTATTTACTGTTTTAAAATTACCAGTAAAA 5124 29 100.0 37 ............................. AGTTGCATGGTCAACTATCCTTGGAAGTCATGAAGCA 5058 29 100.0 36 ............................. GGTAAAAGATTCATGGAACACATAGCTATCGAATTA 4993 29 100.0 38 ............................. TGAAAGATATGAGTTTAATAATGAAAGAAGCACATAGA 4926 29 100.0 36 ............................. GTAGACGTTACTGTTGCTCTTTCTTCTTCTGTTAAA 4861 29 100.0 38 ............................. TTACAAAATAAAAAAGCACCAGGAACTTTAGTTAATTC 4794 29 100.0 36 ............................. AATATCTATGTTATAAACTTTATTACCTTTGAAATC 4729 29 100.0 37 ............................. AACTTGATAATAATGGCGTTGAAAAAGGTGTTGGCGA 4663 29 100.0 36 ............................. TTGTCATTTAAAACACCATCCTTGACACTATTATAA 4598 29 100.0 36 ............................. TTGAACCACTAACATCTGGAATACTAGGATTAAAAA 4533 29 100.0 36 ............................. ATTTATAAAACTCTTGTATAACACCACCATTGAAAG 4468 29 100.0 36 ............................. GTTGATAAACCAGTTGAAAATATATGGGATAAAATA 4403 29 100.0 37 ............................. TTATTTAAGCAATTTGAAGAAGTTTTAAATAAGAATT 4337 29 100.0 36 ............................. AGATAATTTCGATGTTTATGTAAATGAACGTATTGG 4272 29 100.0 36 ............................. TGAAAATATTTAATAATGTTTTTTCTTTTTCATTTA 4207 29 100.0 36 ............................. TTTTCCATTACCTTTACGATTTTGAGTTAAAAGAGT 4142 29 100.0 36 ............................. TGGTCGTTACCTTTGACCTTAGGTTTTTTATTAGTC 4077 29 100.0 36 ............................. ATATGGGAAAATTTCTATATTCATGATGATGCAGGT 4012 29 100.0 37 ............................. GTTGTATAAATGGGTATGATGCGAAGCATATGTATTA 3946 29 100.0 36 ............................. GAAGTATCAGTTTGAACACTACTAAATAAAGAATAA 3881 29 100.0 37 ............................. TTAAAAGCAGAATCCATAGCAGAACTTACATTTGAAA 3815 29 100.0 37 ............................. CAAGGTACTGATTTTTATTCTTTTTGGGGAGATAGAG 3749 29 100.0 36 ............................. AAGAATAGTTATTTTTATTTTCGTTTTCATGATAAG 3684 29 100.0 36 ............................. ACTGCACATGACTTTTTAGATAAAGAGCTTGAGCAA 3619 29 100.0 37 ............................. GGGAAAGTTTTATAGAATGGAAGGATAATTTAATAGC 3553 29 100.0 36 ............................. AAGAAGATTTTAAAACAGAATTATGTTGTTAAAGGA 3488 29 100.0 36 ............................. ACAAAATATTCTGATGAATAAGACATATCTCCTTGA 3423 29 100.0 36 ............................. GAAAGATTACCAGTCAGTAGGAGCTATCATTTGTGG 3358 29 100.0 36 ............................. ATAGTAAACAGCCATTTCAGCACTCTATCATACTTA 3293 29 100.0 37 ............................. GTTAAACCTTTCTCGCCTTTAGCTCCAGGTTCGCCTT 3227 29 100.0 36 ............................. TGGGTTAGAAGGTTTAGATCAGGCTAGTAAAGAAGC 3162 29 100.0 36 ............................. ATACAAGAATCTGAACTTAAAGTAAGAACAGGAAGG 3097 29 100.0 38 ............................. TTCATCTTTGCAGTTTGAGTTTTAATCTTATCTTGTTC 3030 29 100.0 36 ............................. TATTACATGAGATGGTACATTTATATCATAATGTTA 2965 29 100.0 37 ............................. TTGCTTTTTAAGACACACTCTAAATATGTGCCTTCAT 2899 29 86.2 0 .................GAA....C.... | T [2872] ========== ====== ====== ====== ============================= ====================================== ================== 71 29 99.8 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTTATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACATTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : ATATATAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATAAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGTCTATAAGATAGAGAGTTTGTAATACTTAATACTTCCAATATATATGATAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTGATATATACTTGTTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATTTAATAGCTCCCTTGAAATTTCCTCGAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //