Array 1 102617-99076 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCEX01000012.1 Streptococcus ruminantium strain MO557, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 102616 36 100.0 30 .................................... TTTATTAATTCTCATTGCTTCCAAAGTCCA 102550 36 100.0 30 .................................... ATGTGGCGTTCTTTTGTTTTGGGTTTTTCT 102484 36 100.0 30 .................................... TACTCACTAAATTATTCATACAGAATTATG 102418 36 100.0 30 .................................... CAAGTAATTCGATTTTCCCAATTCGTGGGT 102352 36 100.0 30 .................................... TGGCTAAACGAGGTTTGACGGTTGTTGACT 102286 36 100.0 30 .................................... GATGTTATTCTTGTATGGTGAGAAAGGTTC 102220 36 100.0 30 .................................... ACCGAAGAATTCTGTCCAAGCATCATTTAT 102154 36 100.0 30 .................................... TAAGTTTGTCTTTGTTATCCCATATTTTAA 102088 36 100.0 30 .................................... TACATTTAAAAAAATCTAAATATTCTTCAA 102022 36 100.0 30 .................................... AGGAAATAAAAGAACGTATCCCTAACGCTA 101956 36 100.0 30 .................................... TATTTCTTTATGATTTAAGTATATCATTTT 101890 36 100.0 30 .................................... CAATATCGGCCAGGTGTGTAGCACCCTTTA 101824 36 100.0 30 .................................... AATTAGAAAGTCGAACACATGGGAGAACCA 101758 36 100.0 30 .................................... TGGTATATATTATTCGACTGAAAAATTAAA 101692 36 100.0 30 .................................... AGCACCTAATAAGAAGTATAGAAGGAATGT 101626 36 100.0 30 .................................... CTTCAGTCGATAGAACCGTCTCAGGGTTTT 101560 36 100.0 30 .................................... TTCAAACCGTGGTAGTACCGGCGATTATCA 101494 36 100.0 30 .................................... ATAGCGATAACTCAAAAGAGCCATGCGCTA 101428 36 100.0 30 .................................... AGTCTTGTTTAACTGAGCCAATGTCTTGTT 101362 36 100.0 30 .................................... CCGCTAGAGCTTCGCTCGCCGACGTGAATT 101296 36 100.0 30 .................................... CGATTATATTAACGCTCTTACTAAAATGAG 101230 36 100.0 30 .................................... CTGTGATATATATTTCATAAGCTTTCAATT 101164 36 100.0 30 .................................... TCAGCATTTAATAGCTCGTTTTCAATTGAC 101098 36 100.0 30 .................................... TATATCCAGGGTAGACCCCCGGTTTAGTGT 101032 36 100.0 30 .................................... CTGACTCGATAAATGTCTCAAGCTGCCCTT 100966 36 100.0 30 .................................... CTTGGTCTGCTTGTGCCGCCCCGCCACGGA 100900 36 100.0 30 .................................... AACTAAAGCTAACTACAAACGTGAATTTTA 100834 36 100.0 30 .................................... CTCAAAAGACAGATGAAGAACTGGCTATTG 100768 36 100.0 30 .................................... TCAACTTATCCTCATCTCCGTACAAATAGA 100702 36 100.0 30 .................................... ATTTTATTCCCCTTTAGTTCTTTATGATTT 100636 36 100.0 29 .................................... TCAAGGCAGAATTTTAAGAATTTTATAAA 100571 36 100.0 30 .................................... TAGGCGACTCAGATACTCTACTCCACTACG 100505 36 100.0 30 .................................... AAATTAAAAGATTGGCTTAAAACAGGGACT 100439 36 100.0 30 .................................... CTACTCCACCAATTGCGCCCACAACCGGAA 100373 36 100.0 30 .................................... GCCGTGCCAAGTCAGGAAAATCTATGATGT 100307 36 100.0 31 .................................... TCTTCACCATCTACAATTACCTTTCTTAAGT 100240 36 100.0 30 .................................... TTAAGGTTGAAAGATTCCAAGAATTTATCT 100174 36 100.0 30 .................................... GGTACTTTTTAAGTACCTCAAAAAAGAAAG 100108 36 100.0 30 .................................... AATGAACCGGCTATCTACCCTCGCGTATGG 100042 36 100.0 29 .................................... AGATAACAAAAAATGAGTGGCCATTTTTG 99977 36 100.0 30 .................................... ACTAAAGCTAAATTGGATATATTTAGCGTT 99911 36 100.0 30 .................................... GGATTTAGGCGAGCGTATGGTTATTGGTCG 99845 36 100.0 30 .................................... CTACCTCGAAACCTAATAAACACCAGTTGA 99779 36 100.0 30 .................................... AAGCTTCTGAGGGTTAGGGTGATATAGCCT 99713 36 100.0 30 .................................... TTGACCACCCTAAACTGAGAGTGAGCTGTA 99647 36 97.2 30 ........G........................... TAGCTCGTTTTTTTCCAGAACCAGACGTGT 99581 36 100.0 30 .................................... AGGCCTTTCGGTACGCAAATTGGCAGGTTG 99515 36 100.0 30 .................................... AGGCTTTTCGGATTTGATTGATTAGGTCTG 99449 36 100.0 30 .................................... TTTAGAGCTTGATCCATTTCAGTCAGCTGT 99383 36 94.4 29 ........G....................A...... AGAACGACTTCTCGATCTCCGTCATATCT 99318 36 100.0 30 .................................... CTAGGTGCTGTAATTGATAAAAGTGAACTA 99252 36 86.1 37 .................GC....A...T.......T GCTTGACAATATGATTAGATAATGATATTGTTCTTGT 99179 36 75.0 30 ...C...G.T...T.G.....G.....AG....G.. AACCAAAGCTAACTACAAACGTGAATTTTA AG [99170] 99111 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 54 36 99.1 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAATATGGATGATTATTTGGGCTATTCTTCTTTTACAAGAATCGCTCAACACTTAGAAGTGCTCTGTCGAAAATATCCATATTTTCATGTTATGATATTTCCTTCTCAAGAGGGATATCTATACTTAAATGAAAGCACGATTGAAACGGTGAATATTTTAGCAGATCAAATTGAGCATTATCCAGCACTTGAATTTCTATATGAGCGCTATAAGGTCTCTTATCCTTCCAATAATCCATTAGACAAACAAGAGTTTTTGACTTCTCTGCGAAAAGTTAGTTCCTATTTGTTTTGCTCTGAGATAAGCGAAGTGGTTAGTCTGTCATATAGAGATCTACTGACGTTAAAGATCATAAATACCCTTTATCAGTATGATACAAAGCCAAAATTTGAGAAATATTCCTTGTCTGTCTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATTTTGATAGGGATTATAATTGGAATAAGAGAGTATAAAAATCATTTGAG # Right flank : AATTTTGCGGTAAGGTCATTGATTTCTTGACCTTGTTTTTGTCTTCTTAAAATGAAGACAAACTTTTTGTTTTGCCCTGAAATGTAATTTTAAAAGACTTTTGAATGAAAGAAGAAGCGATTTATTTCTCCGTTGAAGATCGCTTTTTTAATGTCGCGATTTCTTTGAAACAACAACTTTAAATTTTTAGTGATCATGTTTTGCTTTTTCTATGATAAAGTAATGAAACTGTTATGCCGTTGTAGTGAGTGTTTTTCAAAATTCTTAGAAAATGATAGAATGTTACCATGACTATATAGATAATAAAATACTTTTGTCTCATAAGGAAAACTATAACAACTTCTCAATACTTTGCGGTCTTTTCCAGTTGTTCTTAGAAAATGCAATAAGTACCTATAGGATGATCGCTTCTATTTGGCTTATCACTATAGAAAGAATATCATGATCTTATTCTAGTGTAAAAAAAGAAGTAAACCTTTCTATCTTGTAATGTAAGATAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //