Array 1 862162-866037 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTTM01000002.1 Azospirillum oryzae strain COC8 NODE_2_length_1161930, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================================================================================== ================== 862162 32 100.0 35 ................................ GTCGGGAGTGCGGCAGATGATGGTCATGGGTCAGC 862229 32 100.0 35 ................................ ATCGCCGACGCAGCGTCGATGCTGCCCTAAGGCTT 862296 31 93.8 33 .T...........-.................. ACGATGCTGGTCAGGTGGTACGGCGGATCGCTG 862360 32 93.8 35 .T............A................. TCGGCGTTGGCGATGCGGGACTCCATCAGGTCCAG 862427 32 96.9 35 .T.............................. ATGTGCCGGCGGGCCGCCGTGTTGCCTTCCATCAA 862494 32 87.5 34 .T.C....T.G..................... CGGGCCATGCGGCGAGCACCCTGCGGCGAGGATG G [862513] 862561 32 93.8 34 .T..........A................... CGCCGAGCCTGGGAAATCGTTCGAGTTACCCGCC 862627 32 81.2 35 .T.C.T......A..........A...A.... AAGCCCAACGTGTTGGTGCTTCAGGAGAAGGTCTG 862694 32 78.1 35 .T.C........A.CT..T............G CTGCGGGCTTATACCGGCTGGCGGCAGAGGGGAGC 862761 32 78.1 34 .T.C...TT...G...A.C............. GCCGACAAGAAGGCCCGTATGGAGACCGACGCCG 862827 32 84.4 35 .T.C........GT.A................ TCCTCTGGTGACATCTCGTCATCAGCCCGAATGTG 862893 32 78.1 35 TC.C......C.TT.................G ATCTGTGCCTCAAAGACGATATTCGGGTTGTCGAT 862960 31 78.1 33 ...CT.G...-.A.A....T............ TCGCTGATCTGAAGAACTTGTTGCTCGATGCGG 863024 32 65.6 35 T.G.CTTG..C.A....A..C.....G..... CGCAGCGGGATGTGCTACGGATACAAATTCTTGGG A [863041] 863092 32 68.8 102 AC.C.T...TC.A...A.A........T.... GGCTTCGGCCAGACGGTAAAGGACAGATACTATATGTCTCGCTCCTTAAAGGGGTGTGGATTGAAACTACGGTGGCGACGCGTTTACCTCGGGCACCGCCAA 863226 31 75.0 32 .G.C........ATA...-.A....C...... GGACTAGACCGACCGCGGCGTAATTTGGCCGC 863291 32 84.4 34 AT.C........G.................G. CGCCGCTGGAAGGCGGTGACGCCGTGACCGACAA C,G [863301,863311] 863360 32 68.8 37 .TC.TG....CTA.AT........G....... GGGACGTAGCTGATGACGATGGTCGCCTTGCCGACCG 863429 31 78.1 32 TC.C..T...GT.-.................. CCCGTGAGGCTGCCGAATAGGAGGATGCGGGC 863493 32 75.0 98 C...T.G...T..G..A.......G..A.... ACGACGGCCTCGACAGGCTCAACCAGGGCGACGGTTTCGCCCCTCATAACGGCGTGGATAGAAACACGGCAGACCTCAAGGCCCACCCCACCTATGTG 863624 32 87.5 33 .G.C........G.C................. CGCCTCGACGTCGAGACCGACAGCACCATCGCC 863689 32 75.0 34 .C.CT.G.T.C..A....A............. TGCGATCTCGGAACCCCGAAGGCCGAGGGCTCCT 863756 32 81.2 36 .T.C.....A..A...A.....A......... GCCTACGACCACTCGACCGATGCTACCTGCCTGTTG 863824 31 75.0 35 CC.....T....GA..CA.-............ TTCGAGGGCGTGGCGGGGGTCACGGCCGACGACTG 863890 32 78.1 34 TC........CA.G.....T....G....... GCACAGGGAAGGATACCTTCCTCCCAGCCGGGAA 863956 32 81.2 32 .CCC........G.A....T............ CGCTATGTCCGCGACGGGGTGACCGTCTGCGA C [863966] 864021 32 78.1 33 .GG.T.......AAT........A........ TGGCACGACGCGGTCCGCGAGGTGTGGAGCAAG 864086 32 84.4 34 .T.C........A.AA................ ACCAACTCGACCCTGCTGCGGCTCTGGAACTCCG 864152 32 84.4 34 .T.CA.......A...A............... TCCGCTTCCCACGGGAAATTGGAGGCGAAAAGCT 864218 32 68.8 100 AG.CT.G.T.C.A...A.............C. TACAGTCGCGACGCGTTCACCTCGGGCACCGCCAAGGTCGTCCAAGCACTGGGCGTAGAATGAAGCCGGGGCTAGACCGACCGCGGCGTAGATCCGGCCG 864350 32 84.4 33 C...CG....C.A................... AAGGCGGTGATTACGTCAGAATCCTTCTGGGAC T [864365] 864416 32 75.0 34 CG...GT..T..A.A...T............. TGCTGCGTCGTGGCTTGCGTCTGAGCCTCGCTGG 864482 32 81.2 35 .T.C..T.....G.A.A............... GACCTTGAGGTCGACAACATGGACCTGCTCGAGGC 864549 30 84.4 35 .T.C........A......--........... CAACTAGGCAATTTCGACGTTTGGACGTTGGAGAA 864614 32 87.5 34 .G.CA.......G................... TACGACCTGAAGCACAAGGCCGACGAGACCTGGA 864680 32 81.2 35 .T.C...T....AT..A............... GTTGAACGGGTCGAGAAGCTTGAAGACCTGTGCGG 864747 32 87.5 35 .T.C...T....G................... GGCATCGGCCAGACCGCTGCCAAGGGCCTCTATGT 864814 32 90.6 99 .T.C........A................... CCGCTCTACCCTACGCACGCCGCGGTGATCCCGTGCTCTCGCCCCCATGGGAATGTGAATTGAAACATGGGCCAGAAGCCCATAGAGGAGCCCAGGACG 864945 32 68.8 35 ..ACT.G...CTTAC.T............... AATTGAGGCGATCAGGCGTTCCGTGCCGACCCCAA 865012 32 87.5 29 .T.C........G..........A........ ACGCTGTCCGCCACCGGTAAGAGCCTTGC 865073 32 78.1 36 CG...GT.T.G..T.................. ACCGAACGCGGACAGGCGGCCTCGTGATCTGGACCG GCCA [865086] 865144 32 75.0 34 TC.C..T...C.T.A...........C..... CTCGACATCGGGATCAATGGCACGGCAGAGCATG 865210 32 81.2 100 .T..CG...TC.T................... GGATTCGGCCAGACGGCAAAGGACGGATACTACATGGCTCGCCCCCTATAGGGGCGTTGATCGAAGCAGCGGCCGGGTCACGTTGTGGACATAGGCATCG 865342 32 71.9 35 .G.CT.GT..T..AC....T............ GACGGTGAGACGCCGACGACCCGCTCGAAGCGGGA 865409 32 71.9 97 .TC.CGTT...TA...C............... TTCGCCACCTCGGCAAAAGCCGGGGCGGACTGCGTCTTCGCTACCACTGGGCACGGATTGAAACATGCCGGCCGACAAGATATTCGGCTATGCCGAG 865538 32 62.5 36 CG.CTTT..TC.TT....A..C.......... GCTGGCCTGGGCGGTGCCTGCCATGGTCTGGAAGAG A [865553] 865607 31 87.5 35 AC..........G-.................. CTGAACACGTTCCAGTTCAACCCGATCCCGCAAGC 865673 32 87.5 34 .T.C.........A.....T............ GACGGGTTCGCAGGGACCGGGACGACCGGCGTCG 865739 32 87.5 35 .T.C........G.......A........... TCGTAGCGGCCCGGCTTGACCCGCCCGACCTTGCG 865806 31 87.5 35 .T.C........G.....-............. ATGCCCCGCTGGTGGGCGATGTCCGAGCGTGTGAT 865872 32 87.5 34 .T.C........G..A................ AAGGTCATCCTGGGCGATGACCCCGGCGGCACAG 865938 32 87.5 36 .T.C.....A..G................... GGCAACTGGGTCGCGGGCGACGAACGCCAGAAGGCC 866006 32 81.2 0 .T.C...T..T.G..................T | ========== ====== ====== ====== ================================ ====================================================================================================== ================== 53 32 81.7 42 GATTGCCCCCACCCGGGGGCGTGGATTGAAAC # Left flank : AATGCCCCCTTGGGAATCCAGAACGGCATGACGGCCGACGACATGCGGCTCCTTTGGGAGTCGATGATGAGGATGTTCACCCTGGACCACGCTGCCGGCCGGGCCATGATGCGGATGCGGGGACTTTATGTCTGGTCCCACAAGAGCCGATATGGCGACGCTCCATTCGATCGGCTCTTCGACATGGTGAAGGTCGCCAAGATCGTGAAGTCCGAGACGGAGATCCCCCGGTCGTTCGAGGACTACCAAATCAATGTTGGGGAACTCGAACCAAACGACCGTATCGTATTCACCCGGCTGATTGGTTGACGAGACGAACAGGCTGCGAACGTCCATTGGACGCAGAATCGCCAAGAGGATCGCGGATGCGATAACACATTGGGAAAATCGGGTTTTTTTAGCTTCGAGAGCCAGCCTTGCGGGCTTGGCCGCTGGTCTTCGACGGGGTTCGCGGAGCATGGGTCTTTGAACCAGTGAATACAGTGGGTTATGTCAGGGGA # Right flank : TAGGTGGAAGTATGAACCCGTAGCGATTCTGCCCCTACGAGAGGTGCAAATTGCAGGTTTCCAGGAAATCGTCCAGGACGGCACTGTGGGCGAGACCTCGCCGAAGCAATCAGGTGGGCGTCTCGCCCGATGGCCGAGTTCACAGGATCACATCCCGAACCGTACTGGGATGCGACCGCCTCCTGGCGTTCAGGGCGTCGGCGAGTCCCTGGACGATGGTGACCCCCGTCCGGTCGATCTCGGCGGTGATCGGCATGACCCTGCCGGCATATTCGTCGGCTTGGGTCTGCCGACGTGAAGGAGCAGATCGGGTGACTTTGGCGAAGTATCGGCTCCCCAGCGGCTCGCTGCGATCACGTGTTACCAGCAGATCGTGACGATTCCACTCCGAGATCAACCGCTCTTCCTTATCGGCCGGGGTAGCCCAAAGGTTGCGGCTGAAAACGTTACGATCATCGTCATGGTCACGTCGCCGTCACTGCTTCTGTGGTGCTCAGCTT # Questionable array : NO Score: 6.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.09, 5:0, 6:0.25, 7:-0.59, 8:1, 9:0.06, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTGCCCCCACCCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGGGCGTGGATAGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [47-46] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //