Array 1 276649-277062 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXS010000004.1 Listeria innocua strain FSL L7-0309 NODE_4_length_289724_cov_94.079493, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 276649 29 96.6 35 ..............A.............. TTGAATTTAAAGCCCAACGGACCAAAACGAGCAAT 276713 29 100.0 36 ............................. TCGATATAACACATATATTTAAAATCATTAAAACTA 276778 29 96.6 36 ..................A.......... ATGTGTAATTTTATTGGCTTCATTGATTAGTGTTTC 276843 29 100.0 34 ............................. TAGCAACACGATAAGCATCTTGAGATTTTTTAGC 276906 29 96.6 35 ..........................G.. ATCACTCCCGGCTTATCTAGCGGATTCCCTTGTTT 276970 29 93.1 35 ......T.......A.............. GGAATCACGGACAGTCAGGCGAAGATAACTAAACT 277034 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ==================================== ================== 7 29 95.1 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CCGGTGTACGTGCCACAACCTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACGATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAGATATAAGCAGAAAACAGCAACTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTAGGGGAAGGGGGGTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCATTCAGATTTAACTCCACCACCATCCACCAAAATCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCAACTTCACTTATGGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 17192-18516 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXS010000001.1 Listeria innocua strain FSL L7-0309 NODE_1_length_1177449_cov_70.861887, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 17192 29 100.0 36 ............................. CCAGAATTGACGTTATCTAATAACAAAAAAACAATG 17257 29 100.0 36 ............................. AACAGAACGGAGGTCAAATCTTTCAATGAGCGAAGA 17322 29 100.0 36 ............................. AAATCATTTCCGCAAGCGTCCCAGTGTTTGACAAGA 17387 29 100.0 37 ............................. TCAATTTCATTATAAGAAAAAGAAATCAGGTATTTCC 17453 29 100.0 36 ............................. AGCCTTGACACGTGCCAGTAATATTTTCCCAAGAAA 17518 29 100.0 37 ............................. CTCGGATTTTTCGAACCGCGTAATTGTTGTTAGGTGC 17584 29 100.0 36 ............................. CTAAATATGGCACTTGGTTAATCACTAACACAGAGC 17649 29 100.0 36 ............................. CGCTCAATGAACTGGGGTATGATGCGGAGTGGCGAG 17714 29 100.0 35 ............................. GTGGTAAAATTGGCGGTTTTTTCATCAATATTCGG 17778 29 100.0 36 ............................. CCGCTTGCTTCAAAATCAGGCAAGCGACGTAATACT 17843 29 100.0 34 ............................. TCTGAATTGGTCTGGATGATGATTAAAATGCAAT 17906 29 100.0 35 ............................. GCGATAATCAAAGCCGGGATTCAATTGTTATTTGC 17970 29 100.0 36 ............................. TTGTAATCTTCGAGTGTTTTCTTTCCATCGGCAACC 18035 29 100.0 34 ............................. AAGGAAGTCCGAAACTTTTCGCTACTTGGGCAGT 18098 29 100.0 37 ............................. ATACAAATCGATGAGGGAGCAGAGCTACAAGAAATAA 18164 29 100.0 36 ............................. GAATCCGATGTAATGATAGGCACTTATCCTTGTACT 18229 29 100.0 37 ............................. TTTAAATAGAAAAAGCGGCATAAAAAGTTGTGGTTGC 18295 29 100.0 35 ............................. TCATTTATAGCGACTATGAGGACGCAGACATCGTC 18359 29 100.0 36 ............................. ATTTAAATGAACTTGCTGACGGATTGACGAATAAAG 18424 29 96.6 34 .........G................... ACAACATGTCAAAAGGCAAATTAAAAAAGACTAG 18487 29 93.1 0 ...G........................C | C [18510] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.5 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCGAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTGGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAACTCTCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACGACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCCTTCTCGACACCAAACGTCTTGGCTGCGAGGTTGGTATTGGCAAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAATAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //