Array 1 1532292-1532931 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADDWZ010000001.1 Escherichia coli isolate SC402, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1532292 29 100.0 33 ............................. GGACCGACCAGTGGCGGCGGGGTAAATAAATGA 1532354 29 100.0 32 ............................. TCTTTCTGCTCTATCCCTGAAGAGCGTACGTC 1532415 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 1532476 29 100.0 32 ............................. TAAAAATTAGGCTTCCACGCCTCAACGCCAGT 1532537 29 100.0 32 ............................. CCCTCCAGGCTATCGCAGCACTGGTCCCGTTT 1532598 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 1532659 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 1532720 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 1532781 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 1532842 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1532903 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAAGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1558636-1559946 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADDWZ010000001.1 Escherichia coli isolate SC402, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1558636 29 100.0 32 ............................. GCAAAACCCTCGACTGGACAAATACCGGCGCG 1558697 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 1558758 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 1558819 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 1558880 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 1558941 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 1559002 29 100.0 32 ............................. CCGGTCGCGCTATTGAGCCGTTCTTTTCACAG 1559063 29 100.0 32 ............................. ACCATAAACATTATCCCCCGGCAAATTACCGC 1559124 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 1559185 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 1559246 29 100.0 33 ............................. GCCTGATTCCCGTATTTGTGAGAGTAATAACGC 1559308 29 100.0 32 ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 1559369 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 1559430 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 1559491 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 1559552 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 1559613 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 1559674 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 1559735 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 1559796 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 1559857 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 1559918 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //