Array 1 40632-44443 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSIJ01000013.1 Vibrio cholerae strain N2814 NODE_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 40632 28 100.0 33 ............................ TATCCGTAAAAATGCGCAAAAAAAACTCGAATC 40693 28 100.0 33 ............................ CCACTCCACGGCCTTCTGAGACGGTTAAGCGGC 40754 28 100.0 33 ............................ CCTGCTTGGCCGATCTGGGCGTCGATTTGTTCG 40815 28 100.0 33 ............................ TATTAGCAAGGCGCTGCGCTTGATACGGGGATG 40876 28 100.0 33 ............................ TCCATCGTAACGCCCCGCTATCGGAGCAAATTC 40937 28 100.0 33 ............................ CCAGATAGACGGTCTTTTTGTTGGACCTAAACC 40998 28 100.0 33 ............................ TTAAAGCTGGCTGGTCCTCCTTCAACCTTTGAA 41059 28 100.0 33 ............................ CCACTCACGGCGCATTAGGTAAGCACGGCTACG 41120 28 100.0 33 ............................ CAGAGGTGGATACAGAAACCGACGAACGCGAGC 41181 28 100.0 33 ............................ CTTCGAGAATATCGGCGGGTATTCCACCGCGCG 41242 28 100.0 33 ............................ TGGTTCAAAAATATTTCCCACTGGTACTAGTGA 41303 28 100.0 33 ............................ CAGTCCTATACTTGGTGATATAGGGAAAAAATT 41364 28 100.0 33 ............................ CAAAAAAGCCTACGGCATGACAAGCCAGAACGT 41425 28 100.0 33 ............................ CTTGATTCGATCTTGCCAATCGATTGAAAGCGC 41486 28 100.0 33 ............................ TAGCGAGCGCGAGACTTTAAAAAGCTTATTGAC 41547 28 100.0 33 ............................ CGAGCTATGAGTTTGCGCGGGATACATACGTAA 41608 28 100.0 33 ............................ CCGCATCAGCCAAAGCGTAGACGCGGAGATTGA 41669 28 100.0 33 ............................ CCCAGGTAAGAAACGAGAGCAAGCGCTGAGTGA 41730 28 100.0 33 ............................ CACCGCAAGTTTCACGACAATCCAAAGGCGTGG 41791 28 100.0 33 ............................ TCCCGTGGAGAAGCCGCTTGATGTTCACCCCGA 41852 28 100.0 33 ............................ TGTTTGAGTTGCCCAGCCCACCGCCTTTATTGC 41913 28 100.0 33 ............................ TGACCGATCCGGTCACTAGCTGGGACAAAAGAA 41974 28 100.0 33 ............................ TGTTTTGTTTGATGCCACTCTATCAGGGGCTCT 42035 28 100.0 33 ............................ CACTCAGCGTTTCTTTAAAGCCTGCCAAGTCTT 42096 28 100.0 33 ............................ CATGTACTCCTCACTTTTTACCACCACTGCAAC 42157 28 100.0 33 ............................ TTTGCTAAATATATCGCTGGCGGAGTTGATAAG 42218 28 100.0 34 ............................ CTGGCTGGCCGCTTGGTGGTCGCGCTTGACTCAC 42280 28 100.0 33 ............................ CACTGACTCACCAAGCTTCGCCACCGCTTCTAG 42341 28 100.0 33 ............................ CAAAGACCAAAGCGAAAACTTGCAATCAAAAAT 42402 28 100.0 33 ............................ CTAGTGTCGGATTGTTTCTACTTTCCCCCTCTC 42463 28 100.0 33 ............................ TGTGCGAGCGGGGATGCCGCTCATTTTTGGTAT 42524 28 100.0 33 ............................ TTCACAAGAGAACCAGCACGAGAAGCCAACGTT 42585 28 100.0 33 ............................ TCAGTTGAGCTATACATCAAGGCTAAAGCAGGA 42646 28 100.0 33 ............................ TGCCATCACCAAGCAGCAGGTTGCGATCAGGAA 42707 28 100.0 33 ............................ TGTTTAACAGTGAAAATATTCGCTCAATAGAAG 42768 28 100.0 33 ............................ CGCTGATCATGGGTGGTAATGTGCTGGGTGATT 42829 28 100.0 33 ............................ TCACAGCCCGGCTGATCTTTGCCTCAATGCAAC 42890 28 100.0 33 ............................ TGTACCTGTTTGAAGTGATCAACGCTCGATACG 42951 28 100.0 33 ............................ TCGTCTTTGTTTAGTATTTCGGTGATTTTCATT 43012 28 100.0 33 ............................ TCAGCCGCCAAACTTCCCCGCCGATTTTTCCGC 43073 28 100.0 33 ............................ CCTCAAAGGCGCTTATGTTGAGACCGAATCAAC 43134 28 100.0 33 ............................ TCAGGAAAGCTTGCAAACCGCCACAGCGCCGCA 43195 28 100.0 33 ............................ CTTGGTATCTTCACCGGGTATTTCAGTGAACTG 43256 28 100.0 33 ............................ TCCATTTGATACGGAAGAGTGGCCGTACAGTGT 43317 28 100.0 33 ............................ TGGTTGAGACGTCAGGGAATTCAAACTTGGGTA 43378 28 100.0 33 ............................ CTTATTTGCACGCCGTCATCAATGCTTAACTGA 43439 28 100.0 33 ............................ TGAACACAGGCCGCTCACCCAAATACTGAAATG 43500 28 100.0 33 ............................ CATTAAAGTCGCCGTAAAATTTATTGTCGCTAC 43561 28 100.0 33 ............................ TTCATCCAGAAAAGAACCTACAGCAAGATAGTT 43622 28 100.0 33 ............................ CCGTGCCGCCAAGCGTCACCACTGTTTTCAAGT 43683 28 100.0 33 ............................ TTGCTTTAGCCACAGAAGGTGTAAGAGCAAATT 43744 28 100.0 33 ............................ TGTTACCAGCGGCATCAATGCGGCGGCTTACTT 43805 28 100.0 33 ............................ CCGGTTTTCGCGGTTACCCAAATGCCCAAGTGC 43866 28 100.0 33 ............................ TTTCTCCATGGTGCGGAAGTCATCGAAATTGAT 43927 28 100.0 33 ............................ CGACGACCATCGGGTATTGAGGTAGCTTGTCGT 43988 28 100.0 33 ............................ CAGGCGAGGATAGTCACCCTGTTCATTTCCAAA 44049 28 100.0 33 ............................ TAACCTGCGTGGTTCATTGCTATACCGTCGACC 44110 28 100.0 33 ............................ TGTAAAGGAATGGTTATATTAAGTGGCTACGAT 44171 28 100.0 33 ............................ TTCTCCACGGCGTTACTTTTGCAGCCTCAGAGT 44232 28 100.0 33 ............................ CCTCCTGAGCACCACCCTTGCGGGCTTTCAGAT 44293 28 100.0 33 ............................ CAGAGAGTATTGACGAGCAAGGTCAGCCACTTC 44354 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA G [44371] 44416 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================== ================== 63 28 99.5 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACCCGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATTTGTTACAACAAGTCTCCTCTGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : AGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //