Array 1 462798-463208 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYYU01000001.1 Mitsuokella jalaludinii strain 2789STDY5608828, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 462798 37 100.0 34 ..................................... CATTGCACGCAGTATCAAATGCCAGAAGACATAG 462869 37 100.0 40 ..................................... AAGCTGTGGATGCAGAAGCGATGCTCTTTCTCAGCAACCT 462946 37 100.0 37 ..................................... CTGAAATCCATTTCGGCGACTTTGCCTCCTTTCAGTG 463020 37 91.9 37 ................T......T.......C..... AGCTGATGGCGTTTGTTGTACAGTGCGATGAGTTTCA 463094 37 89.2 41 ....T...........T......T.......C..... TACCCCGTCGTCGTAGCATGGAAGATAATCTTATCCTTCAT 463172 37 83.8 0 ................T......A.....G....TTT | ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 94.1 38 ATTGCAGCCCTCCCGCGACCGTCCTCGGTATTGAAAC # Left flank : TCGAGATCATCAACAAGTACTTCCACAAAGGTGAGTGTCCATGCCAGGACTGATGTGTCCTGTTATAGACGCGCACCACAACGAAAAAGCTGCTGTCCGCATCGACGGGTAGCAGCTTTTTTGTCGGGCAGCCGCAAACCACCAGCCAGCCCGCGAGCATCCTCGTTACGGGCCGGGCGTCCGTGAGCTTTGGTGGACAGACAAGCTGTCCACGTCGCGCACCGACGCCAAGCGACGGCAGCGCACTTCGAGTGGACAAAGTATGCTCATGATGCTATACTGGAAAAAGCGGAAAACCTTTTTGGGCGTCAAAAAGGCCGTAGGTTTTCCAGTTTTTTACCGAACCCTGCAAACCCTTGCAGGGCAAGCGTTTCGGAGATCGTCACCGAGCAAAAGGCGAACAGAGCTTGCTGCCGGAGAGACGAAAAAGCCGGGAAATCGCAGAGGTTTTCCATTTTACTCATCTGGGGCCAGTAACCCCAAGGGCTCAGGGGCACAGT # Right flank : TGAACAAGAAAAACGGCCCCACAAGATCTTTGAATCTTGTGGGGCCGTTTTTTGGCATGCAAAAGGCCCCGCAGCCGAAGCCGCAGGGCCCAAAAAGGAGAGAGGTTTGGGCGTTTCGCGCCTAGGCACGATTCTCGCCCCGAATGGTCAAGCATTGGTAATTCGTCACACCGCGGGCGATTGCCCGTGAGATGTCGGTGCGGTTGCGCAAAAGGTGCCGCGAGTTGGGGGAGACAGGAGCTCCGCTGCCCTCACTGTGTTCGGGACGACTACGGCGGCCAGCGAGAGAGGAGCGGGATAGCTCGCGCCGCCGTACCTCGCCACGCCGGGCCGGGGAGTCTAGGAACGCGATCCGCTGCCCATCTGGGAGCCGGGCCGTCTTTTGCGTCCGTCCGCTTTGGTGGACAGGCGAGCTGTCCACGTCGCGGCAGACGCCGTGGGAGCGCATCCCCCATTGATGCAGGGCGCGGGCTGACAGGCGGCCTGCTCCTTGTATATAG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:0, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAGCCCTCCCGCGACCGTCCTCGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 182231-186740 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYYU01000002.1 Mitsuokella jalaludinii strain 2789STDY5608828, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 182231 33 100.0 34 ................................. GCTCTGCTCTCTTGTCGCTGCGCAGAAGCTGTCG 182298 33 100.0 34 ................................. TTGACCCGCTCTACTACACGGCCGACGAGATCAA 182365 33 100.0 35 ................................. CGCAGAAGATGGGCGTCACCGTCGCCCAGGCGGGA 182433 33 100.0 34 ................................. TTGTATCTCTTCCGCGGCAAAGTCATCTGCCCGA 182500 33 100.0 33 ................................. TTCGATGACGCGGCGATAATGATGCGCTTGACA 182566 33 100.0 33 ................................. TACAATCTCTTGCAGGATAATTACGAGTGGGAC 182632 33 100.0 33 ................................. GCTTAGGTCTGCGTTGACTGTCGCAATGCGCTC 182698 33 100.0 34 ................................. GCTCTGCTCTCTTGTCGCTGCGCAGAAGCTGTCG 182765 33 100.0 33 ................................. GGCAAATGCTCGGAAGAGCACGTGCCACTCCAA 182831 33 100.0 34 ................................. AATACTCTATGCATTCCGCGCTGCGGCGAAAATC 182898 33 100.0 34 ................................. CCGACGAGTGATCTTGGCTACCATGCGACAATAT 182965 33 100.0 33 ................................. AAAATCACAGCGCAAGATGCAGCAGGACGCCGC 183031 33 100.0 34 ................................. GCCGACGAGAGCATCTCGCTGCGCACAGTCGACA 183098 33 100.0 34 ................................. GCCGCGTATCAGGGGGCAAAAGCGGCAGAGGCGT 183165 33 100.0 33 ................................. CTTTCAGGCCGCCCGCTGCGGCCAGCGGCGGCG 183231 33 100.0 35 ................................. ACTTTGACATCGTCGTTTACGATGGCTACACTGGC 183299 33 100.0 33 ................................. ATGATAGAGATATCATATATATACAACACAATA 183365 33 100.0 33 ................................. TTCGCCGCGTCAAGCTGCACCGTCTTGTCGAGC 183431 33 100.0 33 ................................. CGGATCGTCAATGCGGAGCGCGACGGAGATCTC 183497 33 100.0 33 ................................. ATCTTGATTGCCGTCCGCAAAACGTGACAGTCA 183563 33 100.0 34 ................................. GTCGACCTTCGGCGGCTGTGGCGCAAGAAACTCG 183630 33 100.0 34 ................................. GGTACATCCGTGTCGATATCTGCCGAAGAAGAAC 183697 33 100.0 34 ................................. TGTCAAATCCTGTGCCGATGCACCGGATGTATGA 183764 33 100.0 33 ................................. AAGAATTAATCTAAGTTAACTCTTAACTATATA 183830 33 100.0 35 ................................. TTGCCCCCAAGCACATAGAGAACGAGCAACAATAT 183898 33 100.0 34 ................................. TTAGTCAGCGCGAGCAGGATGTCGGGCACCGCGT 183965 33 100.0 34 ................................. AAGTTAACTCTTAACTATATAATATTGACATGTC 184032 33 100.0 34 ................................. CAATGGTCTAGGGAAAAACCAAAAAGAGGATGTT 184099 33 100.0 34 ................................. ATTGAAAACAGCTATATGACCGGCATATTTCTAT 184166 33 100.0 34 ................................. GTCTCTTTGAGTTCTCGCGATGAAGCGGTTGCAA 184233 33 100.0 35 ................................. GTTCGAGATGCAACGCCAAAGACAGGAGCATGGAA 184301 33 100.0 34 ................................. GCAAATGCGATTGCGGAAAGAAAATTGTGGCAGA 184368 33 100.0 34 ................................. ACGAACTCCGACTCCGGCATGGCGTGCAGCTCCG 184435 33 100.0 33 ................................. TTCTCGAAATAGTAGCCCCTCAGTAAATACTGC 184501 33 100.0 33 ................................. TATATGGCAGACAGCACCAAGAGCGTAGGCAAG 184567 33 100.0 35 ................................. GTCTGGATGCAGGATGATACGGTCATCCATGTACG 184635 33 100.0 33 ................................. CTGTCAGTGCGATTATTGCGGTATCCTGCGATT 184701 33 100.0 35 ................................. TCTTATGACGTAGTTTCATATGATATGACATATGC 184769 33 100.0 33 ................................. CTCGATGATACTGCCGAGGTCTACGTGACCGGA 184835 33 100.0 36 ................................. GCGATCACCAATTATCGAGTACTCTAAGCCATACCG 184904 33 100.0 33 ................................. CACATCTCCGATGCGACGTAGCCGCCCGTCGTG 184970 33 100.0 33 ................................. TCCCATACTCGATATGATTGCTGAAATCATCGA 185036 33 100.0 35 ................................. CCTGCGCTGGCATTCAAAGCGGCGGCAATCGACGC 185104 33 100.0 33 ................................. GTCCGCAGTCTTCCGTGAAATACAACCGAGCTC 185170 33 100.0 34 ................................. GATAGTCTTAAAATATCAAAAGAATAATCATAGC 185237 33 100.0 34 ................................. GTCTCGTAGTAATCCCAACAATTGCTTGCGTAAA 185304 33 100.0 34 ................................. AAGCACTGTATATACAGTGTTAACGTTGGCTATC 185371 33 100.0 34 ................................. CAAAATGTGATTGCATTGGATTGTGTCGTTTATT 185438 33 100.0 33 ................................. CATCCTTGCGTGATGACTGCCGCGAAGGGACGG 185504 33 100.0 34 ................................. TGCTCCAACGGTCAATATCTCTGGACAGGCAGAC 185571 33 100.0 34 ................................. ATTCTGACGTACTGGCAGGAAGTCGATGTGCCGC 185638 33 100.0 33 ................................. GATAGATCCTACTCATGGCACGGCTGTCGTGAC 185704 33 100.0 34 ................................. TTCTTGCGGGCAGTTGTCTTTCTTGTAGCCATGT 185771 33 100.0 33 ................................. TACTTGCTTTTCTGGACAGGCATGCGCGTCGGT 185837 33 100.0 35 ................................. GCTGGCATCGTCGTGCTGCTTGGCACGATTGTGGC 185905 33 100.0 34 ................................. GCCAGTGCTGTGAAGGTTGGCGACAGATTCGACG 185972 33 100.0 34 ................................. GCGACAAAGCCGCAGATTATGGACGCAACGGGCG 186039 33 100.0 34 ................................. CTCTCGCAGGTCATGACCAGCCGTACTCCGTTGC 186106 33 100.0 34 ................................. CCAGGATCTTATTGTCGATTCTCCGGCTGCTTTA 186173 33 100.0 34 ................................. TACCTTCGCGGCATTTTCTTTGGCCTCGGCGTAG 186240 33 100.0 35 ................................. GGGATTGGAAAGAAAAATGCCCTGCGGCTGCGCAA 186308 33 100.0 34 ................................. GCTTCTGCATTTCTCACAGCTACGTCTATGGAAT 186375 33 100.0 33 ................................. CTTCCTGAGCTGCAGGATGAATTCTTCCGTGAC 186441 33 100.0 34 ................................. GTCAGCGACCCAACGGCACAGCAAGCAGTACGGC 186508 33 100.0 35 ................................. AACGAGGATCTCGGCAAATGGGTGCTCGATGTCGT 186576 33 100.0 33 ................................. TATTGAGATTAAAACGGTAAAAGCGTAAAATTA 186642 33 100.0 33 ................................. CTTGCACAGCGGTGCATCTGGGATATGCTCCAC 186708 33 97.0 0 ................................T | ========== ====== ====== ====== ================================= ==================================== ================== 68 33 100.0 34 GTCGCTCCCTATGTAGGGAGCGTGGATTGAAAC # Left flank : GTATATTCTCGTTACCTATGACATCGCTACAACTGATCCAAAAGGAGCGACACGATTGCGGCGTGTGGCAAAGCATTGCCAAAACTACGGGCAACGTGTTCAGAATTCCGTCTTTGAATGTAAAATCAATTCAGCGGAACTTGCACAATTGAAAGAGAATCTGTTGAACTGTATTGACGAGGAGAAGGATAGTTTACGGATTTACTATCTGGGCAGTGAGAAACGCTTTAAGGTTGAACATTACGGGACCAAGGCATCTTTCGATTTGGAGGAAGTGGTTATCATTTGATAGAAGTGCGAACCCCAAGCGAACAGAAATCATCACTTTTGCAAAATGTACGAGAAGCCTTTTAGAAAGAGGGGAAATGAAAAGAGACAGGGAAATGAGTGCTGGGAACGAAAATTAACGTAATCCCAAAAAATAGACAAAATCGCGTCAAAAGGGGGAGACCTATCTCCTTTTCATGCGTGGCAGAATCCCTCTTGTGGAATATTCTGCC # Right flank : TGGCACGTCTACACCATCCATGTAACGTCGCTCTCCGTATAGAGAGCATGGAAGGCGTAATGGAGGCGAAGGGGGAACGGCGGCTGTTCATGACGAAACGGCGTATTTTCATGACGCGGCAGGATTTTGACTTTGGCAGGGCGAATGCTATAATTATGAATGGAATCGTTTACGGATGTGCTGCGCGGAGGTCTACCGTGGCTCTGGCGCGGGCACGTGACGGGAGAAGAGAAGGCGGCTCCGGCTGGATGCAGGAGCTTGGAGCCGAGGAGGAATGGACATGACGCTGCAATTCACGGAACGCGAGGTGAAGGCAGAGATGGCGCGGCTCTCGAAGGAGTACGATATCGTGCGGCTCGTCGACCCGGAGGAATGCCATGCGTTTTCGGTCGGGGCGGACCATTCGTGCAAGTACGGCGAGGGCTGTTATTCGGTCTGGCGCAGCACGAACCGCTGCCGCAACTGCACGAGCCTGCGCGCACTCAAGACGGGCATGGAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATGTAGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //