Array 1 5154998-5155227 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009031.1 Xanthomonas citri pv. citri strain AW13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 5154998 31 100.0 37 ............................... AAATGCTTTCGACGCGCATAAAGCGCTGGCGCAGGAG 5155066 31 100.0 35 ............................... CTGTTCAAGCTCCGCCGCCTGATCCGCTTGCCGAG 5155132 31 100.0 34 ............................... CTCGGGTTTCGGGATGTGCTTCAGATCTGCGTCG 5155197 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 4 31 100.0 36 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGACGCGGCTCAAGTCCCATGATGATTCTTGTAAGCTAGGACGTCAGCACCAGCTCTCCCGGGGGCCAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGGGACCGTGGCCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTACGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAAAAAAAAAAATAAATACATAGCGGATTCACGGGGTCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGGG # Right flank : CTGTTAGCGCCGATGTAAAACTGACCCACAGCGCCGAAGTAAAAGTGACCCACCTGGGCCACGATGGTGGCCTTTTGAAGGCTGCTGATGTTGACTCAGGAGCAGGCAGTGGAGATACGTGTGATGGCCCGCAGGGGCGAGAGTGTCAGAGCGATCGCGAAGCAATTGGAGTGCTCGCGCAACACCGTGCGCAGGTACCTGCGCGATCAAGATGCGCGGCGGTACGGCCCGCGCGAGTCCAGGGCCTGCAAGCTCGACGGCTACCAGTCCTATCTGCGTGAGCGCGTCGTGCAGGCGCATCCGCGCTGGATCCCGGCGACCGTGCTGTTGCGCGAGATCCAGGGGCGCGGCTACACGGGCGGCATCAGCCAGCTCAAGGCCTTCCTGGCCCCGCTCAAGCAGTCCGAGCCCGAGCCGCTGGTGCGCTTCGAGACGCCCCCGGGTCAGCAGATGCAGGTGGATTTCACTTACGTGCGCCGGGGGCGCGATCCGCTGCTGGC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 5157282-5158499 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009031.1 Xanthomonas citri pv. citri strain AW13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 5157282 31 100.0 36 ............................... TCGAGCGCATCGATGACGGTCACCCATCCCCCAATG 5157349 31 100.0 36 ............................... GTGCCACCGACAGCGACGCACGTGGACCTGCAGATC 5157416 31 100.0 34 ............................... CTCTCTCACGCCGCGCGTGCGAGATCCTGCGTGC 5157481 31 100.0 36 ............................... GCAGACTGCCGAGGCCGGCATGCTGGAGGGGCGCCT 5157548 31 100.0 37 ............................... GGGTTAACAACGCCTTGAAACGGCTTTGCCGCGACGC 5157616 31 100.0 35 ............................... GCCATCATGCTTTGAATGCGCTTACCCACGGCGAA 5157682 31 100.0 35 ............................... GCGGATATGTGATTAGACCCTTTTACGACTTTCAG 5157748 31 100.0 35 ............................... ATGTCGAAAACGATGGCCTTGACGTCATCGTCTGC 5157814 31 100.0 34 ............................... TTCGCTGGCATCGGTGGATGGAGCCTTGCGCTTC 5157879 31 100.0 34 ............................... TCATTGAACCCAAGGACCACTTCGCAGGGCGACT 5157944 31 100.0 34 ............................... TTGACCACATGTTCTCTCTGTGGGAGGAAGGCAC 5158009 31 100.0 34 ............................... TGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAA 5158074 31 100.0 34 ............................... GGCTGGGAGCGTTACAAGTTTGAGCAGCCCGTAG 5158139 31 100.0 35 ............................... TGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATC 5158205 31 100.0 34 ............................... CTGACTATCCCTGCATAGGCCACGACCTGCGAGG 5158270 31 100.0 36 ............................... AAGAAGACCAGTCTGCGGCGTCGCGGCATCCTGGGG 5158337 31 100.0 34 ............................... CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT 5158402 31 93.5 36 T...........T.................. CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA 5158469 31 96.8 0 .G............................. | ========== ====== ====== ====== =============================== ===================================== ================== 19 31 99.5 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : CAAGGACTACTTCAACCGCGCGGTACTCGGGCCGAAGCTGCTGGTGGTCGATGAGATCGGCTACCTGCCGTTCGGGCGCGATGAGGCCAACCTGTTCTTCAACGTCGTGGCCAAGCGCTACGAACGCGGCTCGATGGTGCTCACCAGCAACCTGCCGTTCACGCAGTGGCACAGCGCCTTCGCCGACGACCAGACGCTCACAGCGGCGATGCTCGACCGTCTGCTGCACCATGCCCACATCGTGCAGATCGGCGGAGAGAGCTACCGGTTGAAGGACAAACGCAAGGCCGGGCAAACGGCCGCGAGGGTGACGGCGACGGCATGACCGAGGCAACGCGGTTCGGCTGTCTTGGCCCCGGCCCTGAGCAGTCGAACCGCGCAACGAACAAGACCCCGGGTGGGTCAGATTTACTTCGGCGATCCAACGAAAAGTGGGTCAGATTTAAATCGGCGTTGACATGAAACCGCTGCACGGATGCGCCAGGCGGCGAGGCGATCAT # Right flank : CAATTTAAACTCGCCCCGCCAGCCGGACGCTGACGAGGTGCAGGTTGGACATGCTTGAGGCCTGCGTATGGCAAAGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGAACCATTATTTGACGATGATGGTCTGAGGCGTGCCTGCAGGCTTGCCGTCCACCATGACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCAGCCACCTGGCCATCCTGGTAGGTCAGCTTTGCCGACACGGCCACGTTGCTCGCGCTGCCGTCCGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTCGCCGGGGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACACTGGACACCGTCACTGCGCTACCCGTGGCAGCACCGCCATCGGTGCTGGCCGCACCGGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //