Array 1 37404-37153 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060823.1 Cylindrospermopsis curvispora GIHE-G1 plasmid p-r.curvispora1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 37403 35 100.0 39 ................................... CTTACATTACATTGCGTGTTTACCCTTAAATCTCCCTTG 37329 35 100.0 38 ................................... CCTAAAGCAGGGTTTTCGTATATAGGAGATTTAAATAA 37256 35 100.0 34 ................................... CCCATCCGTCAATCGGTACCCAGCCGATCTGCAC 37187 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 4 35 100.0 37 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGA # Left flank : AAAGCCATTACTCCAAGAATTTTAGCGTATACTGTTTGATTGGATGTAGCTATGTAAGTTAGTATTGTATTTTAAGATATTAAATTATAGCTATACATTTTTATCCAGACAATGAAATATACTTTTAAAGTTTTACACCCAGTAACTTACAGTAGCGTATTCACAATAAAAATAAAATATACATAATTTTTAGGGAATTATTTTGCTGTAAATGTGTTATAATACGGGGGAATATAGGGGAAAATCGATATAAATATTTAAGTAATAAGAAAGAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGGCTATTATTTCGTTGGGAACCTCGCAGCCTTGTGGTGTAAAGGTTTCAGCCATTATTTTGATGGTGCTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGG # Right flank : ATTGAGTATATTTAGTGTAGATAAGTAAATTCGCAAACTTTAACTTTCATAAGAGAACTAAGTGTTAAGACAAATAAAAAAGAGGGAGGATAATCTTCCCTCTTTCATTTAAGTATCTATAGATAAAGACTACTACAATCATTAGGTCGGGCATGTAGATATTTAGTTGTAGTAGCAACAGAAGAATGACCTAAAGATGTAGAAACTTGATTAATATCAGCACCATTGTGTAAAGCTAAGGTAGCATGAGTGTGGCGGAGCCAATGGGGACTGGCGCTGATACCAATTCTTTTAGAAGCAGTGCGAACAATATCCCAAACAGCTTTTTGTGTAAGATTTTTACCACCCTTGCGAGATTTAAATACAGGAGACTCATTAGTAGTTTTATGCGACTTTAAAGATGTCCATAGTAAAGGAGGAATGATTAAAGTGCGTTGTTTGTTACCTTTACCAGTAATATGAACATAAGCAGTAGAACCATTATCTTTAATATCTGCCCA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 117312-118422 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060823.1 Cylindrospermopsis curvispora GIHE-G1 plasmid p-r.curvispora1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 117312 36 100.0 35 .................................... CCTATTGGCGTGCAAAATTTGTTTGATGAACTGTG 117383 36 100.0 35 .................................... AGTCTGGGGAGGTTATTAAACACAGGAAATGGAAG 117454 36 100.0 36 .................................... AATTCAATGCCAAGCTACATCCGGATAGTCAGATAA 117526 36 100.0 35 .................................... TTTAAGCAGTATTAGTCTCTACTGGTTATGCTTAT 117597 36 100.0 36 .................................... GATGACAGGGACTACCACCACCAGTGGGGTGTAATT 117669 36 100.0 36 .................................... TAACCTGACTCAGTATTGAACCATTGCACCTGTCTA 117741 36 100.0 37 .................................... GAAAGAACGCCCAATGGTGCGTCTTGTTCTGTCTCTA 117814 36 100.0 35 .................................... TACAATCAGACGAATAAAGAAAATGTCGGATTTTT 117885 36 100.0 35 .................................... CCATCATATCCGCTATCGCCTGTACTGGCTCGGTT 117956 36 100.0 36 .................................... AAATCAGCTTGGGTTTTCTTTGTTGACTCAAGTAGT 118028 36 100.0 37 .................................... AGATATATGGCACGTTCATATGTTGCAACCATGTCTG 118101 36 100.0 36 .................................... ACATTAAAATAACTTATAGGGAGAGATAACAAAAAC 118173 36 100.0 37 .................................... AAAAAACCTGCCCAGATTGCGTTGGCTACGGAAGTAT 118246 36 100.0 35 .................................... AAGTTGTTAGGAGAACTTATGAAACTTGTGTCTTT 118317 36 100.0 34 .................................... TACTTTAGTTTCTAACTCAATACTTTTATAATAT 118387 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 16 36 100.0 36 CTGTTTCAACCTTTGATGCCATTAGGCGTTGATCAC # Left flank : TGGCGCAAAGCATACAATTTATTACAAGGATATGGTGACAGGATTCAGTATTCTATTTTTCGATGCTGGCTGACTATGCGAACACGTGAAAAATTGAGGTGGGAATTAGAAATAATATTAACGAGTGAAGATGAGCTGTTACTAATTCGGCTTTCTCATCAATGTATAAGTGACATACACAAGTATAACCGCTCTGGAGCCTGGTTTGATGCAGAAAGTTACTACAAGATTTTATAATACAAGCACCTCTGACTGTTGGTAAAAAAAACAAAAGAGATAGGCAGAAAGTCTTGTAAGATATGATTTTTAAGAAATTGACTGATTAAATAGGTACTTGCATTTTGTCTGAAAGTAAGTAAGGATAAGGGATTCAAGTGATATAGAGAGCATGTGAAATTCACTTTTCAAGCAAAATTTGTTCATTTTCTTGCATTTCAGATCAGGTGCTTGTAAAATGACCATAGAAAGGCTTCTGGAACTGGTTTTTAGCTACCGCCCTA # Right flank : CCCAAAAAATGTAAATGTAATTAAGTTGCTAAATAAAGTTTAATCTTTTTATGTCTTGTCTAATTTAGATGTAACAAGACGTTTTGTGTTCCGTAAAATTTTAGAAAATCTGGTTTTTTAAAAAGCGGAAATCTTTTTGCCGGGTACTTGGTTTAGTATTGCCATAAAGATAAAAAATATAGTCCTAATACCTGTTTAAGTAACCAAACTCAATCACTGAGTTTGACTTACTTTGATACATCAAACCTTTTGTAACCCATATGTGGAGTATGTCTACTATGTCAAGGCATTTACTAAGATTACTAGAAATAGACTCAATGATTAGAGATAATAGGCGTTTCACAACACGAGAAATGGCAGAAAGACTAGAAGTTAGTGAACGTACATTACGGAGTGACATAGCATTTTTGCGTGATCGATTCAATGCCCCTCTTGATTTTTCGTCTAAACAAGGATTCCACTATACAGATGAAACATGGCGATTGCCTAGCATTAATCTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTTCAACCTTTGATGCCATTAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 3 126896-127646 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060823.1 Cylindrospermopsis curvispora GIHE-G1 plasmid p-r.curvispora1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 126896 36 100.0 36 .................................... TTTCGTGGTTAAAAACAAAAAACTATCGAAATAGTT 126968 36 100.0 35 .................................... GTAAATTAAATGAGTTAAATCTTGAAAATTTGACT 127039 36 100.0 37 .................................... CACGTGCATCCCTGTTACCCTGACGCGCGTCTAGCAA 127112 36 100.0 34 .................................... GCTAGATGAGTACACGTATTTCAGTGGTCTAGGA 127182 36 100.0 39 .................................... AATACCTGGTAGCGGTTGACATGACCAAAACCTTTACCT 127257 36 100.0 36 .................................... GATAAATACTGGTTGGTAAGTACAATAGCGTATAAT 127329 36 100.0 34 .................................... AGCGGCAGAACAACCGAGCCAGTACAGGCGATAG 127399 36 100.0 33 .................................... AGACCACCATGGTCGGTTCGAGTCCCATGGCGG 127468 36 100.0 37 .................................... GGCGCTCGGGGAACCACGTAGCGCGATATCACACCAT 127541 36 100.0 34 .................................... TGTATATAGACAATAAGTTAGCACCAAGCTGGAA 127611 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 11 36 100.0 36 CTGTTTCAACCTTTGATGCCATTAGGCGTTGATCAC # Left flank : CAGATAATACTAAGACTAGAATTCGAGTTTTTTATCCCACTGATTTTGTTATTGAACCACCAGAATCTGCTTGGTCTAAATTACCCATAGGGCAATAATATGGAAACGCAATAACTGTGTTTAACTCTTACTACTAATCCTCCTAATCCCAAATCCACTGATTTTCGCATCATTAATATACATGATTCTGAGTATCTCGATAATTCATAAAGCGTATAATAGTCTTGCGAAATTTTAATAATGCAAGCATCTCTAATTGTTCAGTAAAAAAATAGAACAGATCCTCAAGAAGTCTCGCAGAATATGCTTTTGAAGAATTTGAGGATGAAATAGATGCTTGTATTTTGTCTGAAAGTAAGTAAGGATAAGGGATTCAAGTTATATAGGGAGCATGTAAAATTCACTTTTCAAGCAAAATTTGTTCATTTTCTTGCATTTCAGATCAGGTGCTTGTAAAATGACCATAGAAAGGCTTCTGGAACTGGTTTTCAGCTACCGCC # Right flank : CCAGATAATAGCAGTAGTGATAACAACATCAGTATATTCTATCGCTGGTCTCCCCACTTAGTATGTGGGGTTTGTTTTTCCCATAGGCGACCCTGTTAGTCCAAAAAACTTAGGGGATGCGATCGCAAAAGCGCTACCTAGAAAGCTATCCGAACTACTGTCCTCAGATATCCAATAAGGATGTCTAATTTCTAAAGAATAGACTGAATATAAGAGCGATCGCCCATCCGAGAAAAACTACTGTTATGAAATCAGTATTACCTATATCTCTAACTCATGAGAAGACCCACGAGTTAGGTCGTTTCTATTGATTCCACTTCCGAGAGGGAAGCGCACATGAACACCACCACCATGAACGTTTCCATTGATTCCACTTCCCAGAGGGAAGCGCACTCCAGAAAAAAGTAAAGGACTATTAGCGTCATGAAAAGTTTCCATTGATTCCACTTCCCAGAGGGAAGCGCACAGTTTGATTTGGTTTTTTCAAGCCTTCTTGGGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTTCAACCTTTGATGCCATTAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 4 127946-128333 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060823.1 Cylindrospermopsis curvispora GIHE-G1 plasmid p-r.curvispora1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 127946 36 91.7 21 .....T...G...........G.............. ATGAACACCACCACCATGAAC Deletion [128003] 128003 36 97.2 37 .........G.......................... TCCAGAAAAAAGTAAAGGACTATTAGCGTCATGAAAA 128076 36 97.2 37 .........G.......................... AGTTTGATTTGGTTTTTTCAAGCCTTCTTGGGAAGGA 128149 36 100.0 36 .................................... AGAATTTTCACTACCACTCAGGATCTTTAAAATCCT 128221 36 100.0 41 .................................... TTATTGAGTTACAGATTACATGTACCTCTATAACAACAAAA 128298 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 97.7 35 GTTTCCATTAATTCCACTTCCCAGAGGGAAGCGCAC # Left flank : GTCGGTTCGAGTCCCATGGCGGCTGTTTCAACCTTTGATGCCATTAGGCGTTGATCACGGCGCTCGGGGAACCACGTAGCGCGATATCACACCATCTGTTTCAACCTTTGATGCCATTAGGCGTTGATCACTGTATATAGACAATAAGTTAGCACCAAGCTGGAACTGTTTCAACCTTTGATGCCATTAGGCGTTGATCACCAGATAATAGCAGTAGTGATAACAACATCAGTATATTCTATCGCTGGTCTCCCCACTTAGTATGTGGGGTTTGTTTTTCCCATAGGCGACCCTGTTAGTCCAAAAAACTTAGGGGATGCGATCGCAAAAGCGCTACCTAGAAAGCTATCCGAACTACTGTCCTCAGATATCCAATAAGGATGTCTAATTTCTAAAGAATAGACTGAATATAAGAGCGATCGCCCATCCGAGAAAAACTACTGTTATGAAATCAGTATTACCTATATCTCTAACTCATGAGAAGACCCACGAGTTAGGTC # Right flank : CCCCTCTATTTTAAGCCCTTGCCCTGACTGGTGTCCAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCTCCACCACCCTGAAAATAATGGCTGAAACCCTTACACCACAAGGGTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCCTGACCTTCGCATCTCTTTCGTTAATCACTTAATTTACTATCTTTAATATCACTTTTACTTTTCATAAATACTGGACTAATTATCTCATCTTAATAATGAGAAAATCCCTTAAATTCCCAATCTATAATAACTTTACACCAAAAAACTAATAATTTACATATAATATAAATATTGTAATATTTATTTATTCGCCACCTGTAGAGAAAATCTTAACTATAAAACTTTTGGAACTAATTCTACTTCCCAGAGAGAATCAGCACTAATCATATATGATAAACTTATGACTGTTTATTATTATCTTCCTCCAATATAGACAACAGATAGTTATTTA # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCCACTTCCCAGAGGGAAGCGCAC # Alternate repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 1080025-1076745 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060822.1 Cylindrospermopsis curvispora GIHE-G1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1080024 37 100.0 39 ..................................... GCTGCGCTTTAACTCAATTCGGTTTTCTTGAGAGTGTTC 1079948 37 100.0 35 ..................................... AAAGAGAAAAGAGAGAGAAGAGAAGAAAGAAGACA 1079876 37 100.0 35 ..................................... TCACTTTCGACCTGGGTGGTTGGTTGTCAAAAACC 1079804 37 100.0 35 ..................................... GGAACACCTATTAAATTAGCAAACAAGTCTATCCT 1079732 37 100.0 36 ..................................... ACTACCCCAGTCACTTTCTACCGTACTATCTTTTTT 1079659 37 100.0 34 ..................................... TATGGTGGGAAGACAGATACGCTGATATGAGTAA 1079588 37 100.0 40 ..................................... CCCATTTTCTATGCGCATAAATACTTTACTAGCTCTTGTT 1079511 37 100.0 37 ..................................... CATATTCCGGGAAAGACTTATCCCAATCCTTTACCGC 1079437 37 100.0 36 ..................................... GTTACACCTGCTCTCAATCGGTTCCCCAAGTTATAG 1079364 37 100.0 38 ..................................... TCCTATGTGAGACAAGGGAGATTTAAGGGTAAACACGC 1079289 37 100.0 35 ..................................... AGCTTTATCTAGTAGCAGGATATCTGATGCGTATA 1079217 37 100.0 38 ..................................... GTAGCTTAAATTTAGCGGTTGCAATTAATGGCAGCTCT 1079142 37 100.0 35 ..................................... ATACCTTTCTAGCTCTAGCTTCGGGGCTGTAAGCC 1079070 37 100.0 34 ..................................... CACCCTGGGTTCTACCCGCCAGATATCCCACTTG 1078999 37 100.0 37 ..................................... AATATTCATCCCAGAAATGTCATTGCTGTGGTTATAC 1078925 37 100.0 38 ..................................... TGTAACAGACATCTGCAATTCGCTTATATACGAAGTTT 1078850 37 100.0 36 ..................................... CGGTTGACTCAGCTATATGCACGCCGTTCAAATAAG 1078777 37 100.0 36 ..................................... AGTAGGTTACGGTTTAAGATGCTAATTAAGTCTAGC 1078704 37 100.0 34 ..................................... GTTGAAAGGGAACAGAGAATCAGGGGAGCAACCA 1078633 37 100.0 38 ..................................... GTTGAAAAAAATATCTCCAGATACCAACAACATAGTTG 1078558 37 100.0 35 ..................................... TATGGTATTGATTAATCTAGCCAAAAAATAATTTT 1078486 37 100.0 34 ..................................... TGGGGATAAACCCTAAACCGGTAAAGTCATCCAC 1078415 37 100.0 37 ..................................... GTGAGCTGTTTTTCCAGAAAACCTGGATTTACTTCCT 1078341 37 100.0 34 ..................................... GTAGCTTAAATTTAGCGGTTGCAATTAATGGCAG 1078270 37 100.0 38 ..................................... TGGGGAAATATTTCTAAAATAGCTGGAAGTCTACTGGA 1078195 37 100.0 33 ..................................... CATGAACGAAAGCTGCATAAGAAGTATTCCATG 1078125 37 100.0 41 ..................................... TTAGGAGCTGTATCTGAAGGGGAAGTGGAAGGTCCAGTAGA 1078047 37 100.0 38 ..................................... AATTCAATTTACACTACTAACTTAAACCAGAAAATTTT 1077972 37 100.0 41 ..................................... CTCCTGAACCACAAAGTATCCAAGCTCAAGGTATTCAGGAT 1077894 37 100.0 37 ..................................... AACAGACTTCTAGCTATTCTTAAAATATTTCCCAAAT 1077820 37 100.0 41 ..................................... GGATAAATCCTGCACCAAAGCCCAATCCGATGATGATAAAG 1077742 37 100.0 35 ..................................... TCGTTCCAATGGGTGGAAATGGATGGAAAGCATAA 1077670 37 100.0 37 ..................................... AAAAATCATGTCACGGTCAATCAACCATCCCTTGGAG 1077596 37 100.0 37 ..................................... TTAATATACTACTAGCAGAAGATAAATCCGCTAATAC 1077522 37 100.0 37 ..................................... TGGTACTAGGAACGGATACCACTTATAAAACTAGTTT 1077448 37 100.0 39 ..................................... AGAGTCCTGGAAATTAAAAATTTCCAAGTTACCATATAT 1077372 37 100.0 36 ..................................... TGTTGAAAGGGAACAGGAACAGTCTGTAACGTCAGC 1077299 37 100.0 38 ..................................... TTGGGTTAAAAGATTACTTCCCGATGCTGCTGTAATTG 1077224 37 100.0 37 ..................................... ATCTTTTATTTTCCGCTAGTGTTTTGTCTAAATCCCC 1077150 37 100.0 33 ..................................... TACAGGTCTAGTATAGTGTTTCTTGATTTGTAC 1077080 37 100.0 38 ..................................... TAATAGCTCTAAAACCATTAGGACTTCATAATCAGTGC 1077005 37 100.0 36 ..................................... AAGCTTCAAGAAGAAACTCGATACCGAGTTGAACTT 1076932 37 100.0 41 ..................................... CTGTGTTTTTACCACAAAACCAGGCATTATGTGCCGTTCCC 1076854 37 100.0 36 ..................................... CGCTAGAAAGTATCTTTTAATGGCTTTACTTAATCT 1076781 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 45 37 100.0 37 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : TGACTTTAAAAAAAGCCACTTCTGTAAATTTGGTTAATAATTCTAAAACAGTTAATGGAATGCTTAACTGGTCTGATTTGGTTACTAAACCTCAGCTCTTTGATTTAATTGCTTCAGCCTTACCCACTCGTTTATTAGAGAATGGTAAGTATTTGGTCTCTACTCGTCTATTAGAGGTTAAATTTGCTGATGATGAGGTGATTTATTTACCGAGTGATATGAATTACTTGGCTGCTCTGTAGAGGGATTTCTGCGAGTTGTCTGGGTTCTGGAGTTCATCTTTTAGGCTAATCATCTCTGAAGCTTTTGATTTGATTAGCTTTTTCTACTCCCGGTACTGGTTTCTTGTCTCGCATTTTTTAAAGGTTTGCTGTATGGTGGTTTGACTCTTTTTTCCCTGTACTTTCGTTCTACTCTTTTATGGTATATTCTATGTTAGCTCAATTCGCCTCGCAATATGTCTCTCTAGGCTACCTGCTGCAATGGGTTGGGCGATCGCC # Right flank : TTTTTCCTTTTAAACGAGGTATCTTGTGCTACTGCAATCAAACTCAAATAGATATGAATGTGAGGTTCAAATACTAAACAAGCAAGACTAATCACTTTAAGTCGGAATAATTTCAAGTTTCTTATTATTTCCAGAGATTGAAGAATAATAGTAAAATTGTTAATGAATTAGCAATGAGATAAAGAAATGAAATTAAAAATTAAACCCGTATATTATCAAACCAAGCTAAGAACATCAGTTCCATTTCCGGAACTGGGAAACAACATATCACCCTATCAACATCAAATACAAACATATTGTGCCATAGCTAGGAATCAAAATTATAAAACAGCATCGCAATGGTGCAATAACTGCGAGTTAGTTGAGAGATGTGACATTAATAAATTTCAGCCTTCAGACACCCATAATAGTCTTTGTATTATTAATTCAGCTATTACAGGCGGTGGCAAAACATTAGCTAACTATGCCTACTCTGTGGAACACTGTTTAAATACATCCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 2 1792133-1790909 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060822.1 Cylindrospermopsis curvispora GIHE-G1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1792132 36 100.0 39 .................................... AAATATTCCCTAGTTACTAAGTCCTTTACAATTGGTAGT 1792057 36 100.0 36 .................................... AGATGACTTGGATGATTCCAGCTTGGTTGCGTAATA 1791985 36 100.0 38 .................................... TGACATTACCCACCGCATTACCCAACGAAGTATTAGAA 1791911 36 100.0 40 .................................... GTAGATAGATTGCCAAGGGCCAGAGCGAACAAAAATATAA 1791835 36 100.0 42 .................................... TTTCGCTAGTACCTAACGGTTTCAATAGGCGTATAAAATACC 1791757 36 100.0 37 .................................... CAAAATGATCTTTGAGATCCTGATAGTACCATCGAGG 1791684 36 100.0 41 .................................... TACCTTAGCTAGGTAGTGAAACCTCATCCGGTCTTTATTTA 1791607 36 100.0 37 .................................... CTTCCTTCTCTTCCTCTTCTGCATATGGATTAAAATT 1791534 36 100.0 36 .................................... TTGAACGTTCTTGCTAAAACCTTCACGACCTTCTTT 1791462 36 100.0 36 .................................... ATGAGTTCTACTGGAGCGGGCAGGGGTTCTATATCC 1791390 36 100.0 36 .................................... GTAGCCTTGATTTCTCGACCAAAGAAACCGCTGTAT 1791318 36 100.0 36 .................................... CTCCTGATTTTTTTCTGCTGTCATTTTTTAAATCCT 1791246 36 100.0 38 .................................... CGTGGGTGATGGAGAGTAGAGCCTCTTGGCCCTCGGTG 1791172 36 100.0 40 .................................... ATCTTTTTTACAGGTAACTTAAAGTGTAAGGCGCGCGGCT 1791096 36 100.0 40 .................................... TTCATAACTAACTGCGGGTCAGAAGTCTTGGAAAGCTGTT 1791020 36 100.0 40 .................................... GCCTTAATCTCCTACAAAAAATCATTTACACTGTTAATCT 1790944 36 97.2 0 ..............................A..... | ========== ====== ====== ====== ==================================== ========================================== ================== 17 36 99.8 38 CCCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : CTTTATCTAAACATACCATTCCTCAAATAGAAGCTTGGGGAGTGGGAGTACCCATAGTGCAATTACCCAATTCTATTATTATCTGAGTATTCATGCTAGGTAAAGTTTTAATCTATATGATATCTGTTTACTTTAGTCTAAGCAAAAATAAAATATACAATAAAATTTTTGTTTTTGAATACTAGTTATTTGAGCATGAATCAGTTATAATGATATAGCTAGATGGGTTAATTAACGATTAGTATTGAGATTATTTATTGAGTATTAATTAAGGGCTAAAGTGATATTAATGACAGTAAATTCAGTGATTAACGAATGAAATGCGAAGGTCAGCAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTGGTAGGGGTGAAAAACAGAGAAAATTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGCTTAAAATGGAGGT # Right flank : GCATTGTCTTTAGGTAATTATTGCCACGAGCAATAAAAAGCATCTTTCTATTTTTATTGATGCTAGGGAATGGGGAGAAATTTAAAATATGAGAGCGATCGCCTACAATAAGCTATAAGATCGCACCTCCTCAACTCCCCAAACAGCGATTATTCATTTTTATTAAACTGGTACGTCTGACTCCTTCTGCGCTAAAATATCGTTAGTTCAAGGAATTGGCTATGAAAATAAAAGCAATTATTTGGGAAGAAGACGGTGTATGGTGTGGTTCTGTACCAGCTTTACCAGGATGTCATACCTGGGGTGAAAGTTACGAACATTTATTAGAAATGTTGAAAGATGCTGTTCAAGGTTGGTTAGAAGTTGCTAGTCAGCAAGAAGAAGTTGAACCACAAAAACAGTTAATTGAGTTATCTTTATGAAATCCGTTTCTGGTAAGTCTCTGTGTAAGATTGTTGAACGCTATGGATGGAATCTAAAAAGGATTACAGGTAGTCATC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 3 2388228-2387063 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060822.1 Cylindrospermopsis curvispora GIHE-G1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 2388227 36 100.0 38 .................................... CTAGAGCTAATAAAGTCAACTGAAGATATCCTCGAGGC 2388153 36 100.0 37 .................................... GAGTTACCTTCCCTTACATTAACAAGGAAATCCACCT 2388080 36 100.0 37 .................................... TTCTTAGGAGGATGTATGTCTTGTTTTGATTGTAGGT 2388007 36 100.0 45 .................................... TTGTTAATTGAATTTCAAAACCCAAACACCGGTGTTTGGGACTCA 2387926 36 100.0 37 .................................... TGATAATCATTGGCTGGGGAGCCGAGTGGCTGTGGGA 2387853 36 100.0 36 .................................... AGCAGGAAGGCTTTCTGTTCTTTGCGGATAAAGTGA 2387781 36 100.0 39 .................................... ATAGCCAAGAGCTGCAAGAGTACGTACTCTTGCAGCTTG 2387706 36 100.0 39 .................................... ATCCCCTGGAACCACCATTTAGAATTGTGATAGCTGAAA 2387631 36 97.2 42 ...................................G CAAAGGGGTTTGATTTCCCCTCGCTCAAGCAGGCATTAACAT 2387553 36 100.0 45 .................................... TAAAAGAGCTGAGTAGCATCTTCAGGGAGAGAGTTTTGGCAAGAG 2387472 36 100.0 42 .................................... AAGCAATACTAACCCGAACGGAGAAGGAGATAGAGGATCTAA 2387394 36 100.0 37 .................................... AGTATGATGTTGTTAATTGAGTTTCAAAACCCAAACA 2387321 36 100.0 38 .................................... CCATTTTTTATTTGACTAGTGACAGTGTAAGACATAAA 2387247 36 100.0 40 .................................... ACCTTTGGGAAAATATTTTTAAATCTATCAAATGCTTACA 2387171 36 100.0 37 .................................... AAGTATTAGAGGTCGAAAAGACCAAAGAGACTATTTT 2387098 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 16 36 99.8 39 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Left flank : TAACAACGATCAGACAAGATGTGTGATATACAAGAATTATAGCTTAAAATATCCTTGCTCCTTAGTCTCCCCAACTAGTGATAAACCCTAGTATTTCATGAGACTACGATCAATGGTGATCGATGAAACTGCTGTTGTCGAGACTCCCGCTAATGTCAGCACTTTGCCAATAATGCTACATTTGGCACTAACTTTCTGCATCAGTGTCAAGCAACTCCAGCATCTCATTTTGGTGCCTTATTAGTATGTTATTCTGCTTCTTGATATCTTCAAGGTGAGCTACTATTCTTTCCAATATCATCACAATATGATTAATTCTGAACACCCATCTCACTATGGCGACTTGGATTATAAGGACTACTATTACTATAAAAAAAATGTAAATAACTTCCATATTATTTTGTGTGTAATATTACCAAGATTCAATAGTTTAACATTGTCATTGGTTTATACATGTTTCTATTCAATCAGTGTCCCCAGCGAGTGAGGTCTACTCTATT # Right flank : CCCTCCATTTTAAGCCCTTGCCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTCTTTTTCACCTCCACTACCCTCAAAATAATGGCTGAAACCCTTACCCCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCAGTTCCTTCGTTAATTACTAGTTTTAGTGTCATTTGTATTACTTTACTTTTTAAATATACTTGGTTAATAAAATTTAAAATAAATCCTGGAATCCCCCTATTATAGAGGATTTATAGAATAATAGTCAATATTGTAGAACCAACAATATAATGTAACATTTAAATTTTCTAATGTCAGTCGTTTATTAGAGATTTTAGAGAACAAATCCAGCCAGGTTCTAGATGAGATGAAAAAACTATCCGAACCACTGTTTTTATTAACACTACTACTGGCGATCGCATGAGATTCAAAATACCCAATAGGCATCAAGTATAAAGTTTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 4 2812608-2813597 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060822.1 Cylindrospermopsis curvispora GIHE-G1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2812608 36 100.0 35 .................................... ATGACATGGTTTTACTGGCCGTTACTGGACAAAAA 2812679 36 100.0 38 .................................... GGTATGTTTGGAGCGCCTACTACTTTTCCTGATACTGT 2812753 36 100.0 37 .................................... TGGTTTCTTTCTAGCCATGCTTGGGGTGGTTCGTACA 2812826 36 100.0 36 .................................... TTATATCTGAAAATCCAGACTACCTTCAATACAGAG 2812898 36 100.0 40 .................................... TAATCGTGATTGTAGGTTATGTATCTATTACATATGGGAG 2812974 36 100.0 36 .................................... AGACTGGACTTTAGCGAAAGGTTCGCTTACAATTCG 2813046 36 100.0 41 .................................... AGCAAAGCCTTCTGAAGAGAAGAGAAGCTAACCAAGGAGTT 2813123 36 100.0 38 .................................... AGCCTATAATGATTTGCTCAATCTCATCCACCGTTGGG 2813197 36 100.0 36 .................................... CTTTCAACCCAAGCTTGGGGTGGCTGATACGTTGAA 2813269 36 100.0 36 .................................... ATCAGTTATAGCCTCATTACCCACAGTTGTTATAAA 2813341 36 100.0 37 .................................... TTGAATTGTTATCAGCAGAACTTAGAAAACGCCTGAT 2813414 36 100.0 37 .................................... TCCCTAAGCCTTTCGGCTTCTTCTTTAGAAGAAGCCC 2813487 36 100.0 39 .................................... GTAAAGGTTCCAATGAACTTCTCATCCGCACGGGGATGG 2813562 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 14 36 100.0 37 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : TTGAGGAATGAAACTCAACTGGGATAATTATAATTAATTGGGTGGAGTTGTGCGATTCAGGTTTATGTTTTATGACATTCAATCCGAACTACAAATTTTTATACGGGTGTTAAAATGCAGCCTAAACATTTCGTACCCGCTAACCTACAGTATGGCATTCACAATAAAAAATAAAATATACATAAGTTTTAGACAATTATTTTCCCATAAGTGTGTTATAATATTGGAATATTTAGGGAAAAGCTCGATATAAATATTTAAGTAATAACAAACAACAATGATAAAAATAAAGACAAAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAGAGAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAAGGTTTCAGCCATTATTTTGAGGGTGGTGGAGGTGAAAAACAGAGAAATTTTGTTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGG # Right flank : CATCACAGGGAGCTGCTCTAAAACAGCGAATATTACATTTGTCTTGACCTTTGCAAGAAAGATTTTATTATATTGGTGTAAGTGTTAATAGTATTAATAGTTTTACCGGATTGATAGAGATATTCCTGGTAATCTCTAAAATTAGCAGCAGTACAATTAGCTATATGGATGTCACTTAAATAAGATATGTAACTACGAATTATCCTATTATAATTTATTCTAGAGTGTTTAGATTTACCATCTAACCATTGATTTATAGCATTAGTAATGGCGATCGCCAGTAGTTTAAGGGAGGAAAGTGACCTAGGGAATGAATTCCCAAAGGTGGTTTTTCGGGATGATTTACCAAAAATTTTTCAATGTTTTCAGATATTTTCATCCCGTAAATATGTAAGTCAGAGAATGTGATTACTGGATGGCATCATAGAGGCTAGCACCTTTAGCACCAGAGAGGCTAGCACCTCTGAGGAAAGCATGTCTGAGTTTAGCACCTCTGAGGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 5 2989113-2990623 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060822.1 Cylindrospermopsis curvispora GIHE-G1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2989113 36 91.7 39 .....T...G...........G.............. CCCAGTGTTTAACGAAAAACCAACTTTAGACAAATCTTT 2989188 36 97.2 38 .........G.......................... TCGCCTTTTACGATGGCTCAGATAACCTTGCCTGGTTA 2989262 36 100.0 38 .................................... TCGACGAATGGTGGAACGAGTTTTTTGAAGACCAAGAA 2989336 36 100.0 36 .................................... TGGAACCGCGTTAAACGCAAAGACCCAAATCCGCGA 2989408 36 100.0 35 .................................... AAGACAAGCAAGAGATTATTTTCCGCGAAACGGGC 2989479 36 100.0 38 .................................... GAAGCAATGCAGTTATGCACAATAAACAACATCAGTGA 2989553 36 100.0 36 .................................... CACCAGAGTTGGGTTGCAGAGACTGGGAACCCAAAC 2989625 36 100.0 37 .................................... CCGCATAGACTACATCCCAACGGTGGATGAGATTGAG 2989698 36 100.0 38 .................................... GTAAGATATTGCAATATTTCCGCAAACAGCCACCCCAT 2989772 36 100.0 39 .................................... ATAAATACGAAACCTGGACGCCCCAGGAAGTAGTACATT 2989847 36 100.0 38 .................................... CAGTGCTAGAGCCTCCAACTATCTTGAATAAATCTGCT 2989921 36 100.0 35 .................................... ATGATGATATTCCATTAGCGATTCAGCTGTATTAG 2989992 36 100.0 39 .................................... CGTGCGAGGGTGTAATCAGTGGTATAAAAATGTTAGATT 2990067 36 100.0 35 .................................... TTAACAATCCATCATCAATCATCCTCTGTCTTAGT 2990138 36 100.0 38 .................................... GACTTGATTGACCTTCAGTACCTCGACCATCTAAGTAT 2990212 36 100.0 38 .................................... AATATCATTAGATGATTTCTTGGTTTTTTCTTCCATTG 2990286 36 100.0 41 .................................... GCATCCAACTCCTGTATCTCTGTGGCATCTCCATTAACTCT 2990363 36 100.0 37 .................................... TTATAATAAGGATGGGTTTTATAAACCCACAAAATTT 2990436 36 100.0 40 .................................... TTGTTGTCAATATCTAGGGCAACTAGCAATGAAGTGATAT 2990512 36 100.0 40 .................................... ATGAAGAGGCCATTCAAGATGCCGAAGCCTACATAGGCAT 2990588 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 21 36 99.5 38 GTTTCCATTAATTCCACTTCCCAGAGGGAAGCGCAC # Left flank : CTAATTTCTAAAGAACAGACTGAATATAAGAGCGATCGCAAAAGCGCTACCTAGAAAGCTATCCGAACTACTGTCCTCAGATATCCAATGGATGTCTAATTTCTAAAGAACAGACTGAATATAAGAGCGATCGCAAAAGCGCTACCTAGAAAGCTATCCGAACTACTGTCCTCAGATATCCAATGGATGTCTAATTTCTAAAGAACAGACTGAATATAAGAGCGATCGCAAAAGCGCTACCTAGAAAGCTATCCGAACTACTGTCCTCAGATATCCAATAAGGATGTCTAATTTCTAAAGAACAGACTGAATATAAGAGCGATCGCAAAAGCGCTACCTAGAAAGCTATCCGAACTACTGTCCTCAGATATCCAATAAGGATGTCTAATTTCTAAAGAACAGACTGAATATAAGAGCGATCGCCCATCCGAGAAAAACTACTGTTATGAAATCAGTATTACCTATATCTCTAACTCATGAGAAGACCCCCGAGTTAGGTC # Right flank : CCCCTCTATTTTAAGCCCTTGCCCTGACTGGTGTCCAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCTCCACCACCCTGAAAATAATGGCTGAAACCCTTACACCACAAGGGTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCCTGACCTTCGCATCTCTTTCGTTAATCACTTAATTTACTGTCTTTAATATCACTTTTACTTTTCATAAATACTGGACTAATTATCTCATCTTAATAATGAGAAAATCCCTTAAATTCCCAATCTATAATAACTTTACACCAAAAAACTAATAATTTACATATAATATAAATATTGTAATATTTATTTATTCGCCACCTGTAGAGAAAATCTTAACTATAAAACTTTTGGAACTAATTCTACTTCCCAGAGAGAATCAGCACTAATCATATATGATAAACTTATGACTGTTTATTATTATCTTCCTCCAATATAGATAACAGATAGTTATTTA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCCACTTCCCAGAGGGAAGCGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 6 3325893-3326224 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060822.1 Cylindrospermopsis curvispora GIHE-G1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 3325893 36 100.0 39 .................................... ATCCTCCTTCATAGTGGTCAAAGAGACTATACTCACTCT 3325968 36 100.0 38 .................................... TGTCTGACTTGGGTCTCTTTGTTAACCCAGACACACAC 3326042 36 100.0 39 .................................... TTGAGATATAGTGTGTTCTAGAATTTTCCCCACATTTTC 3326117 36 100.0 36 .................................... TGCTATCACAGCCGCTTTCGAAGCTTGGTTGGAAGC 3326189 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 100.0 38 GTCGCAATACCTGTTCCTTCTTATGAAGGTCAAGAC # Left flank : CCGATTTCTAAATCACCATTTCCATAATTACGCTGCTGAAAATATGGAGGTGAGGTAATAATTAAATCAAAAGTATCATTTTCTATTTGTTTAAGAACAGATAAGTTATCACCAAAGATAATTTTATTTTTAAAGGGTGATATTTCTTGTAATGGCATATTTATGAGCAAACGACGTTCATTGAATTTGTAATTTGTACAGTATACAATATTCGGGTCTTTTGGATCACATAATACCAAAAATTATTTTTATTTTAATAATCTATTAGTTCAACCGTTAGAAGTGCTGAAAGCTTCTAACATTGCTTACCGTCACTTCTGAAGTCTCCATATTGAACTCAACAATATAGACTACATTTTATTATGTGGATATTACGAGAGATTTGTTAATATCTGGGTAGAAATTTCCTTTCAGCTTTTAGCCCTCAATAACACGCACATAAATAGCCCGTACATTTTGCCTATCTAAAGTCATTGACAGATTACCAACTTGAATCACAA # Right flank : CCCCTCCATTTTAACCCCTTACCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCCCCACTACCCTCAAAATAATGGCTGAAACCTTTACGCCACAAGGCTGCGAGGTTCCCAACGAAATAATAGGCATTCCAGCGTTTTTTTCTGACCTTCGCACTTTCTTCGCTAATTACTGATTTTTCTGTCTTTATTTTTATCATTATTCTTTCTTATTACTTAAATATTTATATCAATTTTTTCTCTAAATATCCCAATAATATAACACATTTATGGGTAAATAATTCCCTAAAAATTATGTATATTTTATTTTTATCGTAAATCCGATACCGTAGATTAGCGTTTGTAAAGCGTTTATAATGTATTTCATCACTTGCATAAAAACTTGTACTTCAGATTAAATTTTATAAAGCATAATACCAAATCTCATAACTCCACCTAATTATTAATTAGAATCATCCCCACGAAAAGCGATCGCA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATACCTGTTCCTTCTTATGAAGGTCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.90,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 7 3339334-3337976 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060822.1 Cylindrospermopsis curvispora GIHE-G1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3339333 36 100.0 35 .................................... TAAGAACCCGCTCTAGTGGCGGGTTTTAAAATAAA 3339262 36 100.0 40 .................................... TTAATCTTAATGCGACACCATATTTAAAACCGTTCCAGTT 3339186 36 100.0 39 .................................... TTCCTACTTGGTTAGCAGTTCATATGCAGCATTGATTTG 3339111 36 100.0 35 .................................... TTACTGGCAACTATCAAGCTTTAAACTATTTTTGG 3339040 36 100.0 37 .................................... TAATATTGAGGTCAGCCTTAAGGCTGACTTTGATGTC 3338967 36 100.0 37 .................................... ATGACAAGTTCATCGGAACGTTTACCACCTACCAGGA 3338894 36 100.0 38 .................................... TTCGGTTACTAGGTAGTCTGCTGTTATAGCAGGTTGTA 3338820 36 100.0 38 .................................... ACGAACTACTGGTTCTAGGATGGAGCGCAGAAGAGCTT 3338746 36 100.0 38 .................................... TGCTGGATCAGGCATTTCCTCAACTTGAGGACGGGGAC 3338672 36 100.0 37 .................................... AAGTTAAACCTTTTAGAGAAAACTTATCTTCTACTAT 3338599 36 100.0 38 .................................... GACCTCGTTTTCTCAAGCCTTCTTAGGAAAGAGGTGGA 3338525 36 100.0 37 .................................... TAAAGAAGCAATCCTAACTCAAACCGAATTAGAAATT 3338452 36 100.0 38 .................................... CTATCTGTAGTTAGTCTACCAGATCTCTGGTACTAATA 3338378 36 100.0 39 .................................... TGCCACGACTGTAAATACTACACATGGGAGGCAATACTG 3338303 36 100.0 35 .................................... CACAAGAATTACACACACATAGCGTCATCTTGATT 3338232 36 100.0 39 .................................... AGGTTTTGGCTTGGTATTCTTGTCCGAATACCTCTATAG 3338157 36 100.0 38 .................................... ACGAAACGTGGGATGTCTGCGTTAGATAGAGAGAGTTA 3338083 36 100.0 36 .................................... ATCATAGAAGTATAACCTATGATTCGAGAGAAAGAA 3338011 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 19 36 100.0 38 GTCGCAATACCTATTCCTTCTTATGAAGGTCAAGAC # Left flank : CAGCATTAATTTGTTTTGTTCCATAGGTATCCGCCCACCCATCTAAATACAGAGCTGGTAAGTTCCAACTACCTATTAAATCTCCTGTTAAATTAGGTGTATCCGGAGTTATTGCTGTTAAGATATTCAACAATTTTTCTACGGATTTGGTTTTAGCTACTTTGTCATTCCGAGAAATAATAAAATGTCCACATAATAAATGGGGAACACCATATATATCACCATTGACTGTGACTCCTTGTAAACCTGCAGGATACCAATCTTTGATATTTTCAGGTTTATTCCATGTTTTGACTACATTTGCTTTGACTAAATCACCTAATAATAATGTATCTACTTCAACGAGATCATAACCATCTTGTTTGCTAGGGTTGGTTAACCATTGTTTTAAAGTGTCTATGTCATAAAATCCTTCTTCTTCTGGGTTGAGAGGTTTTAATACTAAGTCAATGTTGGGATTTTGGGTTTCAAACTCACTTTCAATTCTGTATCCCTCAGTA # Right flank : CCCTCCATTTTAACACCTTACCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCCCCACTACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCAACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCACTTTCTTCGTTAATTACTGATTTTTCTGTCTTTATTTTTATCATTATCCTTTGCTATTACTGAAATATTTATACCGATTTTTCCCCATTTGTGCCACTATTATAACACATTTACAGGAAAATAATTCCCTAAAACTTATGTATATTTTATTTTTTTGAGACCACTTCATTCTCACCCCCTATTAGGTACTACATTGACTGGGATATTTCATTACTCGCATAAAAGTTTTTAGGTTAGATAAAATGTCGTAAAATACCTACCCAAATCCCTATCTTACCCAAATATCTATCTAAAGATAGATGTAACTATTCCCATAGATAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATACCTATTCCTTCTTATGAAGGTCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //