Array 1 1395631-1393083 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQUI01000002.1 Actinopolyspora halophila DSM 43834 ActhaDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1395630 37 100.0 36 ..................................... TCCCAGTTGTGTAATGTCAGGCAGGTGAGTAATATA 1395557 37 100.0 37 ..................................... TATGGCCGTATAAAGAACGTGACTAAAACTCCCAGGC 1395483 37 100.0 38 ..................................... TTTGAGTTGGTCGGCCACCAGGGTGGGCTGCTGGTTAT 1395408 37 100.0 36 ..................................... CAACGGGAACGCGGTCCAACCGCCCCGGTCGCAATA 1395335 37 100.0 35 ..................................... TGCTGTGGTGCGCCCAGTGGAACGGCCAGCCCGGA 1395263 37 100.0 37 ..................................... GCGGGTGTCGCCGGTGGTGAGGTCGACGATCCCTCCG 1395189 37 100.0 36 ..................................... TCCGGAGAGCCAGTTGCGGCTTCACCTGCACGGGAT 1395116 37 100.0 38 ..................................... GCGTGGAGCACGGAAAACCGCTCACGCCTCAACCACGT 1395041 37 100.0 37 ..................................... CACCGCTAGCATGAGCGTCCCGGAAAGTACCGATACT 1394967 37 100.0 37 ..................................... GAGCATTTCGAGACTGCCGGACACGGCTCCGGTGATC 1394893 37 100.0 40 ..................................... GACGCGTCGTGCTTTCAGGGTGGCGTGGCCGGACGCGGTT 1394816 37 100.0 37 ..................................... GACGTCCTCCTGGTCGAGTCGACTTTTGAACAGCTCG 1394742 37 100.0 37 ..................................... CACCCGCACATTGCCGCATGGTGGCGCAGGTGGCGGG 1394668 37 100.0 36 ..................................... ATGCCTCGGATCTGAAGGGCGGCGTCGAGATGGCCC 1394595 37 100.0 36 ..................................... GAGATCCTCCACGACGGACTCGAAACCGGCCGGGCC 1394522 37 100.0 35 ..................................... AGGAGCTCCTCGACTGGGCTCCGGCGAACTCGACC 1394450 37 97.3 36 ................A.................... GAGGCGTTGTCTCGCTCGTTGACCGCGATTTCTGAT 1394377 37 100.0 38 ..................................... TTCACCGCCGAGGCCGAAGTCCTGGCCGCGGCCTCGGA 1394302 37 100.0 35 ..................................... GATGTCGAGGGTTATCTCGTTGTTGTGGTCGACAA 1394230 37 100.0 37 ..................................... CGTGTGCACGATCTCGCCCGAATCGGATTCCGTGAAA 1394156 37 100.0 36 ..................................... ACCGACCTGTACGAGCACGACGTAACCGTGCGGCAC 1394083 37 100.0 38 ..................................... GGCGACTTCATCGAACACCAACACGGGCTCAACGCCAC 1394008 37 100.0 39 ..................................... AGCACTGGCATCTCGGCCGGTGCGCTGTCTGCGGCGGAT 1393932 37 100.0 37 ..................................... TCTTGGAAGAGAGCAACGAGCTTGGCTGGTGGGAAGA 1393858 37 100.0 39 ..................................... TCACGGTGAAAATGGCTCCGGGCCAGAAAGCGCAGAAAT 1393782 37 100.0 36 ..................................... GACGGCTACGTCGACGAGATCCGCCGCGCCATCGAT 1393709 37 100.0 37 ..................................... CAGCTCATCGGCGAAGGTGCCGGTGCGGACGTAGATG 1393635 37 100.0 36 ..................................... CAGTGGGGCCCGATCGGGCACGCGGTCATGGTCGTG 1393562 37 100.0 35 ..................................... CTGTGTAGTCAACTACGACGCAGGAGCAATCAAGT 1393490 37 100.0 36 ..................................... GTAGCCGTCCGGGCAGCTCGGCCCCGGCGGACCCTG 1393417 37 100.0 38 ..................................... GGTTAGGTCATGGCACTATGCCTAAAAAGTGCAGAGTC 1393342 37 100.0 36 ..................................... AGTACGTCGTCGTCGATCGCGTACTCACCGGCGAAC 1393269 37 97.3 38 .............................G....... GACGTGCACGGACGAGCCTGTGCCGTCGACGCCGAACC 1393194 37 100.0 38 ..................................... CAGAGGCAGGGTGTTCAGGCCGGTGAGTCGGGCGGCTC 1393119 36 81.1 0 .......................A..CC-....T.GG | C [1393088] ========== ====== ====== ====== ===================================== ======================================== ================== 35 37 99.3 37 GTGGCGCCAGCCCTCCGGGGCTGGCGAGGATCGCAAC # Left flank : GCCATCTGCGCGGGGACCAACCGAGCTACACCCCGTGGATTGCGAGCTGACCGTGGAACTGCTGATCACCTACGACGTGGACACAACCACAACGGAGGGACGTCGTCGGCTCAGGCACGTGGCCAAGGCGTGTGAGGCATACGGGAGCCGCGTGCAGAAGTCCGTGTTCGAGGTCGTGTGCCGCCCTTCCGACTGGATGCACATGAAGCAGCGACTCAGCGAGATCATCGATCCGCACGAGGACAGCATCCGCATCTACTCCATGGACAGAGGAAGCTTCGCATCGGCCGAGCACTTGGGGCAGTCACCACCGGCACCGCACGATACGCCGCTGGTGTTCTGAGTTTCCGGCAAGAGCATCAGCGAGTGACGATGTACGGCTTCGGAGGTGCAAGCGTGTCTCGACACGCCACGAGGTTCCCAAGCACCTGCTCGGCGTGTCGGTCACGGGATAGTCACAACGGCGAGGTGACTACCCTGAAAACCCCTGCTCAATCGCC # Right flank : TCACCTCGAACTCATTCGGCGCGCAGGAACTCGGTGATTGCCGTGTTCCAGTCGAAGGTGGCCAAGCCGTCGACACCTCGGCTGGTGAGACTGTCCGGATCGAGCAGGCGCACGCCGGCATCGGCCAGCAGCCGGATATTGGCCGGGTAAGCGGGGTGCCGGCGCAGCACGGGCTTCACGCAGGGCGCCAGGGTGATGGGCACCTCGCCGGCCAGCAGCTCGTTGACCAGGCTGACCGCCAGGGTGTCACTAATCCCCGCGGCGATCTTGTTGAGGCTGTTGAACGTCACCGGCGCGACCAGCACAGCATCGGCCTTCGGCAGCGGGTCCTGCTCGCTGGGCATCCTGGGGCGCACACGCACCGGCCGACCGGACCGCTCGGCGAGCTCCTCCCCGTCGACCCACTCCGCGGCGGTGGGAGTCAGCACCACGCACACGTCCCAACCCGCCCGGCGCAGCAGCCCGACCGGTTCGGCCAGCTCCCGCACCGGCGGCGCAGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCAGCCCTCCGGGGCTGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.40,-19.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 1403758-1406298 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQUI01000002.1 Actinopolyspora halophila DSM 43834 ActhaDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1403758 37 100.0 39 ..................................... TCGACCTGTGTTTCGACGGGAGGCCCGAAGGGCGCTGAG 1403834 37 100.0 37 ..................................... TCGGTGCGGGGCCGGGGAATGGTGAGCGCCCACCGTG 1403908 37 100.0 35 ..................................... GTGACTGGGGTGTGCCGGTCCTGCTGCTGCTGGTG 1403980 37 100.0 38 ..................................... CTTGCGGAGTGTGCGGCGCGGTTCTGTCGCTATGGGAG 1404055 37 100.0 37 ..................................... ACAGCTCCACTAGGGTCAGTTCAACATCGGTGTACGG 1404129 37 100.0 37 ..................................... GGCTTGCGCTTCGGGATGGGTTGGCTGGTCGTGCCGA 1404203 37 100.0 37 ..................................... ACCATCGGGTGCGCCCGGTTCAGGTGGCCGGTTTCTG 1404277 37 100.0 36 ..................................... GACGATTGGTGACAAGGAGCAGCCGGTGTCCGTACT 1404350 37 100.0 35 ..................................... GGACTCGACTTCGGGGTGCTCGTTGTCGGTATCCA 1404422 37 100.0 39 ..................................... GCGACGCGCTGCGTGAGGCCACCCTCGCCCAGGCTGCCT 1404498 37 100.0 37 ..................................... TGCTGCTGCTGGTCGTCGCGGGAGAGGGGCTGGGACG 1404572 37 100.0 36 ..................................... GACCCCCGGGCCCGCATCCGGGTCTACGTGCTGGCC 1404645 37 100.0 37 ..................................... ACCGGATCAACCCCGAATCCCGGCAGGACTGGGAAAC 1404719 37 100.0 36 ..................................... GTGGGCCTGTCGAGCGCGGTCGATGACCGCTCGGTG 1404792 37 100.0 37 ..................................... TGCTGCTGCTGGTCGTCGCGGGAGAGGGGCTGGGACG 1404866 37 100.0 36 ..................................... GACCCCCGGGCCCGCATCCGGGTCTACGTGCTGGCC 1404939 37 100.0 37 ..................................... ACCGGATCAACCCCGAATCCCGGCAGGACTGGGAAAC 1405013 37 100.0 36 ..................................... GTGGGCCTGTCGAGCGCGGTCGATGACCGCTCGGTG 1405086 37 100.0 37 ..................................... TGCTGCTGCTGGTCGTCGCGGGAGAGGGGCTGGGACG 1405160 37 100.0 35 ..................................... GACCCCCGGGCCCGCATCGGGTCTACGTGCTGGCC 1405232 37 100.0 36 ..................................... GACCCCNGGGCCCGCATCCGGGTCTACGTGCTGGCC 1405305 37 100.0 36 ..................................... GGCGGACTCCAGACCTGCGGGAGCCTGTGGGCCTGC 1405378 37 100.0 37 ..................................... GGGAGCTGGTTGTCCACCACCCCCTCCCCGCAGCCGC 1405452 37 100.0 36 ..................................... GCCAACATCGCCATCATCCTGATGGTGATCCTCGTG 1405525 37 100.0 37 ..................................... CCGGCTCCGAGGCGGAAGGCTCCTCGGCGGCGTCGGG 1405599 37 100.0 36 ..................................... GGCCAGTCGGCTTTCCAGGGTCTCGATTTGGGTGCT 1405672 37 100.0 35 ..................................... CTTGCGGACTTTGTCGCTGGCGCGTCGGCGGATTC 1405744 37 100.0 38 ..................................... GCGAGCACGTGCCGATCGCGGGCCGCGTCGCGCACACC 1405819 37 100.0 36 ..................................... TACGGCCTGGGCCGCGTCCCCGGGTCGCATCGACTG 1405892 37 100.0 37 ..................................... GGTGTGGGAGCACCGGCCGGGGCCGTTTTTGGTTGGA 1405966 37 100.0 37 ..................................... GGGTTCGCGATGGACCGCAGCACCCAACGCGCCAGCG 1406040 37 91.9 37 ............C.T..G................... CCCGGGTGGAAGTCCTACGTGGACGACTCGAAGGCGT 1406114 36 94.6 38 ............C....-................... GGCATCTGGGGCGGACTCACGGCTACCGAGCGAGCCGG 1406188 37 89.2 36 ............CC...G........G.......... ATCGACGCTGAGGCGGAGTCCTACCGCCGAACAATG 1406261 37 86.5 0 ..........................C..T..T.CT. | C [1406287] ========== ====== ====== ====== ===================================== ======================================= ================== 35 37 98.9 37 GTGGCGCCAGCCTTCCGAGGCTGGCGAGGATCGCAAC # Left flank : TCCGCTGTGGCACGTGCGTGTTCCGAGAAGCCGTGTCTGTCGCCGTTGATGTTGACGCTGTGTGCGTACACCTCTCACCCCAGTCGGTTACCTCACTCACCGGAATCGGTCAGGAACGTATCGCGAACAACCGACAGCGATCACCCGGCCCTGCTTCGGGGGTGGGGAAGGACCGCAAGGCCACTTGGGAACCCCAAGCGTGTCCCGGAACCCCGGGAGGTTCTCAAGTGGATGCCCGGATCTGTTGGGAGAGCGAGAGATTGGAGGCTGAGGCAGCCGAGAGCGTCGTGGGGATGTGCCAGCATTGACCGCGGCGCGATGAGCAGAGAAGGGATGAGTTCGGGACGATCTCGGGTGAACGGAAGCGACGACTGCGCTGGCTTCGGAAGGGGAAGCGTGTGTCGACATGCCGTGAAGTTCCGAAGCGTTTGTTCGGCGTGTCGGTCACAGGGCTGTCACAACCGGGGGACGGCTATCCTGAGAACCCCTGCTCAATCGCG # Right flank : CCGAACTGCTTACGGCGCCATGGTGACGAAGGTGTTCAGGTGTTGTCCGTCGGTGCCGTACACGTTGAGTTCGTAGTCGAGGACCTCGGATTCGTCGCGGCCGTCGTGGCGGACGGAGGCCGCCAGCAGGCGCTTGAGATGTTCTGGGCTGTCGGGGTCGGCTTCGGCGGTGAAGGTGCGGACGGTCGTACCGAGACGGCGGACTTCGAAGTGCAGCAGTCGCGGCCCTTCGGAAGCGGGTATCGACTCCGCTCCGGAGGATTCCTCGGCCGGTGCTTCCTGCCGCTGCGGTTGTTCCCCGTCGTCCGCGGCTACGAGCTCACGTGCTCCGACCGCGACGGTCGTTGGCTTGCCGCGGGACGTTTCGGCCAGCCTCCAGGTCTTGAGCAGTGTGACGGCTCTGCCGGCGGTGCCCACGGACACGTGGTGCTGGTCCGCGAGCTGCTTCGCGGTCGGCACCCGATCGCCGTCGACGAGCTCCCCGAGTCCGATCCGGTCGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCAGCCTTCCGAGGCTGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.70,-15.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 3090798-3090527 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQUI01000002.1 Actinopolyspora halophila DSM 43834 ActhaDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 3090797 26 100.0 35 .......................... GCTGGGCTTGTTCCCGCCGTCCCGGTAATGCTGTG 3090736 26 100.0 35 .......................... GCCGAAATCCGTTCGTCAACGCAGCTCAGACCGGA 3090675 26 100.0 35 .......................... CCTCGGGTTAGGACACCAGGTCACGCAGTTCGCGG 3090614 26 96.2 35 ..............T........... CCGCCACTGCCCTCGTCTCAGCAGCCCGGCGAGAT 3090553 26 80.8 0 ...........A.G.........TCG | G [3090540] ========== ====== ====== ====== ========================== =================================== ================== 5 26 95.4 35 GTAGGCCCCGCGCACGCGGGGATAGA # Left flank : AGCATGGACATGGCTCACTTGGGTGGGGAGCTGGCCGAGCACCTCGTCCGGGTCAAGAAGGAGGCCGGTGAGCGCGAGCTCGTGGTGGTGGCGATGGTTCCGAAGAGCGTGATGCTGGCGGTCGGTTGGCAGCTGTCCCAGCACGACTGCCGGTTCTTCCGGGGGACGCATCTGATGCACTACGACCAGGCGAGCAAGGACTACATTCCGATGCGGGTGCGTGAGTCGCAGCCCACCACGCCGCCGTTGCCTGCGGTGGAGGGTGGTCCAGCGGGGCAGGACGGTGGTTCCACCGCGCGGGCGAGTGGGTTCCCTTCGGAGAACGGGCAGCAGAGCGAGCAGGACGGTGGTTCCACGCGTTGCTGACGGGGGCTTCTGGCTCTCCTGGCGTGTGCCCGTCGTGGGTGGTTGCGTGGCGGTGTCGACGGTGTCGGTGCTTCGTCCGGAGGAAAGTGATTCCAAAAGCTCGATGTCGCTGGTAAACTCCCAGCGCAGGAAGT # Right flank : TGGAGCTACGCGCCGGTGGCCGGTGTGCGCCCCACACCGGCCACCGGGTGTTTCAGCTGCCGACGAGTCCCGGAGCGAGCCGTTGGACGAGCTCGTGCACGGTCGTCCGGCCGTCGAGGGTGAGCACGGATTCCGGGTGGAACTGCACACCGGCGATGTTCGGCGCGCGGAAGGCGTACACTTCGCCGCTGTCCGCATCGCGGCTGAGTTCGATCCCGCTGGTGTGCAGTCGCGTGGCTGTGGCGTCGTCGGCGTGGGCGGTGAAGGAGTTGTAGAACCCCACGGTGGAGCGCTGTCCGAAGAGGTCGATGTCGCGCTGCAACCCTTGGTGCGGCTGGGGTTTGCGGAGCAGGGGCAGCCCGAGTTCGCGGCCGATCAGCTGGTGTCCCAGGCACACGCCCAGCAGCGGGTGCTCGTCCGTCCGCGCCCTGTGGACCAGCTGGTGGGCCAGTTCGCGCAGTCGGAGCATGCGGGTGTCGTCCTGGTCGTCGGGGTTGCCG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCACGCGGGGATAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 4 3567450-3568004 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQUI01000002.1 Actinopolyspora halophila DSM 43834 ActhaDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3567450 28 100.0 33 ............................ CCGCCGTGCGTCCGGGTTACGCGGATCGTCGTC 3567511 28 100.0 33 ............................ GCATCGACCGCCCAGTGCCGCTGTAGCGGACCG 3567572 28 100.0 33 ............................ CTTCCGGGGGCGCCTTGCTGTCGGCTCACTCGA 3567633 28 100.0 33 ............................ CAACATGGTGTCGTCGTTCGCCGGAAACCCGAA 3567694 28 100.0 33 ............................ GTGGAACGTCGATCGTGGCGGCTCGGTGGCGCT 3567755 28 100.0 33 ............................ CCGCGTATCCGGGGATTCGGAGTGCCACACGCG 3567816 28 100.0 33 ............................ GATGCGCGTGCCGAAGCACTCCCGGAGTTCCGG 3567877 28 100.0 11 ............................ CGGCGGTTCCG Deletion [3567916] 3567916 28 78.6 33 ..AAC.........GT.C.......... CAAAGCCAGGCTCACCCCGGACCGGCACCACAC 3567977 28 82.1 0 ........T..TT.T......A...... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 96.1 31 GGTTTCCCCGCGCGAGCGGGGGTGAGCC # Left flank : AGACCATCTTCAATTCCGCGGATCGTCTCCGAGGCTCACTAGGATCGGCTCGATCCGCTCTGCCGGTGCGCTGCCAGCAGGACAGGCCCGAAGCCGTTGTTGCTCGCTCGAGAGCATAAGGAGGTCGTTCGTGTGCTCCACCGGCCTCCGGAGAGATGAGCTGTGCAGAAGCTGGGTAAGGGGCAGCTCGGTAACCGTTCCCTTCGCGGTCAAGCGAGGCACAACCGGATCGAAGTATCACCTGCTCTGCAACGACGTCAGAGCTTTCCTTGACAAGGATTCTTATCAACGACGCTCGTCCGGTCCGGCCACGAGACCGCGTAGCAACCAGAGTTCACACGCTGCTCGAGACCAGCACCACCATGCGGCTACACGAACTACGCCTTCGCTGGCAGACTGATCGTCGATGCCCCTACCCGCGCCTTCCGACGTCGCGACAAGCAAGCACCCCACAAGGCCACAAAACGGTAACCTCATCTGATTTTCCCAGCACAAAAAGG # Right flank : CGCCGATATGGCTGGCATCAAACTGGCAAGGTGAAGATCACGCCACCTTGGCGGTCAACTGGCGAACAGGGCTGTCCCCGAGCGTGTGGAGGCGTAGCCCTGCCTGGACGAGGTCGGCGGGATTGAGGTGACCTCTGGTGTCGACGACGAGGTCGCCACGCATGGTTCGGGCGAGGTTGTGCCAAGGCAGGGCGACGAATTCCGTCCATTCGGTGAGCACGAGAACCGCGTCCGCCCCTTCCAACGCCCCGGCGGCTGTGGGAGCGAGTGGAGTCTGGGGGAGCTCGGTGACGGAGTCCGTGACGGCTGGGTCATACGCGATGACCTGGGCATCGCGCGCTACCAACTCGGTCGCGATGGGAAGTGCGGATGAATTGCGTACGTCGTTGGTCTCGGGCTTGAACGTGAGACCGAGTAGGCAGACACGCGTGCGGGCCAATGGCTTCGACAGGAGCTGCTCGATCAAATCGACGATGCGCCGCTGGTGATGCGCGTTCGAC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCCCCGCGCGAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 3583545-3583875 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQUI01000002.1 Actinopolyspora halophila DSM 43834 ActhaDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================================================== ================== 3583545 28 100.0 33 ............................ GCGACGGGCGTGTGCTGCCAACACCGCCCGCCA 3583606 28 100.0 33 ............................ ACGGACTACTCATCGGTGACCCCCTCGATCACG 3583667 28 100.0 33 ............................ TGCGAGGCGAAGCATGATGCGCGCCCGCCTCGA 3583728 28 75.0 91 .AAC.......G.AA.......C..... GCTGAATGACGTGGGTCCGGGTCCCGGGAGCGTGAACTCCCCGTGCGAGCGGGGGAGCCCACCACCGGCCGCTCCGCCCCAGCAGCCAGCC 3583847 27 82.1 0 ...................A..CA.A.- | CC [3583871] Deletion [3583874] ========== ====== ====== ====== ============================ =========================================================================================== ================== 5 28 91.4 48 GGTTTCCCCGCTCGCGCGGGGGTGAGCC # Left flank : TCTGCACAACACCGCCGTGAATTGAACAATTAGCGTTGGAACGTCAGCCTGCCCCCAACGGGGTCACCTGACCAAGGGTGGAGTGAAATGCATAGTCGATACTGAAAAGCACCGAAAGGGATCGACACGGCTGGCTGGTTGCTTCTCACGAGCTCTGGTTGATCTCTGCCGACCACTGGGGTCTGTTTTCGAAGTTGGAGCCACTCGTTGATGGCAACGATGGTCACGGTGCCTTCGTGGCAGACGGCGAGTCTGTCGTATCTTACGACCACGGCGCGATGGTGGTGCAGTCTCACCGAATCATCCGACCACAAGACCGCGTAGCAGCCAGTGTCCACACGCTGCTACGAGACCAGCACGACCATGCGGCTACACCAACCACGCCATCGATGGCAGACTGATCGTCAATGCCCCTACCCGCATCTTCCGACGTCGCGGCAAGTGAGCACCCCACAAGATCACAAAACGGTAACGCACTCTAATTTTCCCAGCACAAAAAG # Right flank : CTCATCAAACACAACAGCTAGCAGTTTCCCGTGGTGGGAAACCGCTCGAGGACGTGCCAGGTGTAGTGGTGATCGGCGCGGGTGAGTTCGACCAGGCGCAGCTCAGTGATGGTGATCTCGACAGGAGGCAGTGCCCGTGCCCGGCGCACAGAGCGAATGATCTCCTTCGGTGACTGCACCCGATTGCTGTAGGCAATACCCACATGGGGTCGGTACATCCGCAGCGGGTCGATGTCGGCATGGCCCGAGGCCGTCGACACCGCGCGATACACCCCAAGCAGTGGAGACCACGGAGCGACGCTGAACCGCACAGCTCCCGAAGAACCGGCCAACGGGATCAGTTGCAGACGAAACGGCTCGATCCCACGGCAGTGTTCCCCCACGGCCCTGGCCGCGGCCCGCAACGTCGGCACGGGCACCTCATCGACATAGCCCAGACGGCGCACGGTCAGGTGCAGACTCTCCGGCGGAACCAGATCGAGCCCCTCCGCGGGCAGCAG # Questionable array : NO Score: 4.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-1.42, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCCCCGCTCGCGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCATGCGCGGGGGTGAGCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.90,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //