Array 1 27964-22616 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLYY01000010.1 Alkalihalobacillus shacheensis strain HNA-14 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 27963 32 100.0 34 ................................ AGCCTGGCATCCTACTAACGGCAGAGGATCAGGA 27897 32 100.0 36 ................................ AAACGGAATATCAAACACCTTTTGATTGCCTCGGGT 27829 32 100.0 34 ................................ AACGTACGGATCTTCCGAGCGCCGTCGAGGCCGA 27763 32 100.0 34 ................................ ACCCAACTTTTGGCCGTTCCGGGGCGCGTGGAAC 27697 32 100.0 36 ................................ ACCTTCCCGGTGCAATTTGGCATCGAGGGAGATGTG 27629 32 100.0 33 ................................ AGCGCAACCAAAGGGGTAATTGCTTAGCACATG 27564 32 100.0 34 ................................ ATGATTGCCCTCAGTCAAACGAAGAAAGAGAAAC 27498 32 100.0 35 ................................ CAAGACGGGACAACACGCATTTTCAACGCGGTATC 27431 32 100.0 34 ................................ TACCAGCGCGGATTAGCGGGAAATTGTCACGCTC 27365 32 100.0 34 ................................ TTTCCTTTTAAACCTAGCTCGTTCGTGAAATCGG 27299 32 100.0 35 ................................ TTCTCCAAGTTTCCAAGCATAACATCGGGTGATTC 27232 32 100.0 33 ................................ ATGGCACCAAGTACTGGCTTGACTCTACGCTGT 27167 32 100.0 35 ................................ TCTGTAGTAGTCATCAAGCCACGAGACAAAAGAGT 27100 32 100.0 35 ................................ CGTCAGCCCCGGACAGACGATCGGCCTTGTCGGTT 27033 32 100.0 34 ................................ CTCCAGCCGATTGCGCCATTAATTACAGGTATAG 26967 32 100.0 34 ................................ AACGATGTCGAGCATGGTTTCTTTAGCAAGAAAT 26901 32 100.0 35 ................................ AACAACACGTACGGTTTGAGTGGTAGTGCAAAAAG 26834 32 100.0 35 ................................ TCCGTGTCCCTTGACGTTGTTTACACCGATGCCAA 26767 32 100.0 34 ................................ GCCACAACAACAACCTACCGCGTCAATGAGTGGC 26701 32 100.0 34 ................................ TGCGATGTAGCCGCAACAAGAGCACCGTTGAGAC 26635 32 100.0 33 ................................ GATCGGACTCCTTACGATTAGATCACGTCTCAC 26570 32 100.0 36 ................................ AACAGTGTGACAGGTAACGAGCGCCAGTACCAAGCC 26502 32 100.0 34 ................................ CGCACATCCTCTTGTTTGATTCCTTTGCGCTCCA 26436 32 100.0 37 ................................ ACAGAAGCTCTCCCTCAGTTTATTGAGCAAGGGACGC 26367 32 100.0 36 ................................ TAAGTAAAAATCCACGCTCATTTCTGCCATGCGCTG 26299 32 100.0 34 ................................ TTAAAACTGCTGTTCCGTATATAGTTCCTCCCAC 26233 32 100.0 35 ................................ AGGAAACATCACCGTCACTTCAGCTTTCCACAAAA 26166 32 100.0 34 ................................ TTTTTAGCCCGTCTGACATTCGTTGTGGCATGCC 26100 32 100.0 33 ................................ GATTCCTCAAACACGCCGCCCAGTAGGTTTTCG 26035 32 100.0 33 ................................ ATTGCTTAATCAGCCCCCTTATGTGTGGTTTAA 25970 32 100.0 33 ................................ AGCCTATCAACCACATTAGACTCCTTTAATGGG 25905 32 100.0 35 ................................ ATGGGATGGTTGAAAGCATTAAACAAGAGCGAGAC 25838 32 100.0 34 ................................ CACGGAAGGTGGACACACGATGCCGGAGCCGCAA 25772 32 100.0 35 ................................ TAATCGTTCCCCGTCAATCACAGCTTGGCGTAGCA 25705 32 100.0 33 ................................ TTACGAGCGTGGCATTGATCGAATCGTTACGAA 25640 32 100.0 36 ................................ AAAAATACGGCTTTGGCTATAGCGACAAAATGGAAA 25572 32 100.0 35 ................................ GACAGCCTCTTTGGTTTTCTTTTTATCCAACTCAG 25505 32 100.0 34 ................................ TCCCTTTAAGCATATAAGCGCTTGATTCGACGAT 25439 32 100.0 35 ................................ AACTGGTGTCGTCCTCGGTCTTCGTATGGTCGCCG 25372 32 100.0 33 ................................ AGCAATCCTGCTTGCGTGAGTTCCAGACGCGAC 25307 32 100.0 36 ................................ ACAAAGGCTCGGCCGATCTATACGGCAAACAGGAGC 25239 32 100.0 33 ................................ CTAAGTAGTTTTGACACGGTATCAACCCCTTCT 25174 32 100.0 36 ................................ ATATCAGCAAATGCATACTTCGCAATCTGTTTTAAC 25106 32 100.0 36 ................................ ATATCAGCAAATGCATACTTCGCAATCTGTTTTAAC 25038 32 100.0 36 ................................ ATATCAGCAAATGCATACTTCGCAATCTGTTTTAAC 24970 32 100.0 35 ................................ TTCAGATTTTCGACGTAGGAACGATGATAATCCTC 24903 32 100.0 34 ................................ AAATAGGAGTTGAATGATAATGGATTTTAAAGTT 24837 32 100.0 36 ................................ TCCATCTTTGCGTACGTTTGTACATGGATGCCCAGT 24769 32 100.0 35 ................................ TAGCATCCGATCCCGGTTTACTGATATGAAAAATC 24702 32 100.0 34 ................................ ACGTTCCCGGTGCAGTTTGGCATCGAGGGCGACG 24636 32 100.0 34 ................................ CACAATCCCCCCTTCGCCTTGCCAGTTATGAGAG 24570 32 100.0 36 ................................ TTGGTAAGAGCAAGCGCAAGGTGAGAAGTCGCTGAT 24502 32 100.0 36 ................................ ACCTCCAGGTTCTTCCGCTCCTCCATCATCGGTGGA 24434 32 100.0 34 ................................ ACACCTCTCACTTTTTCTACTAAAAATCCAAACA 24368 32 100.0 33 ................................ GCCTAGGTCTTGGCGAATAAATGTATCCTCCAC 24303 32 100.0 34 ................................ ATTTTGGGTTCCTCCCGGGAGCCGCCTGTGGTAC 24237 32 100.0 35 ................................ ACCAGCGTATATACTCAGGAGTGGTTCACCGATTC 24170 32 100.0 33 ................................ TTCAATGTCTCTGTCTAGTTGTAGGATCTCCGC 24105 32 100.0 34 ................................ CGAAAAATTGGATCAATCGATTCATTGGTCCGAG 24039 32 100.0 35 ................................ TGAAGAGTGTCCCACTCGTTTTGAAGCCGTTTCGC 23972 32 100.0 36 ................................ CGACACGTTTCGCGGCATTATACACAATCTCAGAGA 23904 32 100.0 34 ................................ GTCATGCAAAATCAGTTGCTCCAAGGCCAAGACC 23838 32 100.0 33 ................................ ATCTGGGAAGTAATAAAACGTCAGTCGTTTGGA 23773 32 100.0 35 ................................ AAAGAGCGTCAGGGTCGATGGCAAGGGAGGTGTCC 23706 32 100.0 35 ................................ TTTGATGTACTGCGCTTCCCGCTTTAAAAGGCGGC 23639 32 100.0 33 ................................ CCCTATGCCCATCATTACTCGAGAAGGACTATT 23574 32 100.0 33 ................................ TTATCAAGCTCGGCCATCTTTTCTGCGGCGTTG 23509 32 100.0 34 ................................ TTCATACTCGGAGGGGGTAAGCTCCAAAAACCCA 23443 32 100.0 36 ................................ ACAGGACTCTCGCCTCCGATACGGTTTTGTATAGCC 23375 32 100.0 35 ................................ CCGAGACGCTCGCCCTGGTCAAGCAGGTACATTTG 23308 32 100.0 36 ................................ TTCGTCCCTCTGCTTGGCTTTGGCATGGTTGATCAC 23240 32 100.0 35 ................................ CTTGAGTATCGCTACTCTTGCGTGTGAGTCCTTTG 23173 32 100.0 33 ................................ TTTATTAGATTCATCATTAACCCCTGCCGCTAG 23108 32 100.0 34 ................................ TTCTTTTCAACAGTCAACCCATGACCTCACTGGA 23042 32 100.0 34 ................................ CTTTGACGACAGGCTGGGAAACAAATTCTCTACG 22976 32 100.0 36 ................................ AGAGATTAGACGTGCTAGAGCTTGATTTTGCTTCCC 22908 32 100.0 33 ................................ TTCCATCTCGTCCACGTCGAAAAAGTGAGTAAT 22843 32 100.0 34 ................................ ATAACGATAGCACTGTATTCGCGGTATGTCTCGT 22777 32 100.0 33 ................................ GCTCGTCCATATAGGTTCGCCTCCATTTATACG 22712 32 100.0 33 ................................ TAGTATAAGGCTATTACAATTCCATCTGCCCTG 22647 32 81.2 0 ........T..C..........AAC....C.. | ========== ====== ====== ====== ================================ ===================================== ================== 81 32 99.8 34 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GATGAATATCCGCCATTTTTATGGAAGTAGGTGAACGGATGCTTGTATTAATTACGTATGATGTCAGTACAACCAGTACTGGGGGAACGAAGCGGCTCCGTAAAGTAGCAAAAGCGTGCCAAAATTATGGGCAACGAGTACAAAACTCTGTGTTTGAATGCATTGTGGATGCTGCGCAATTTACAACGCTTAAAATTGAACTTGCGAACCTAATCAATGAAGAGCAAGACAGCCTGCGTTTTTATCAACTAGGGAATAATTATAAAACGAAAGTCGAGCACATCGGTGTGAAGGAATCGATTGATCTGGATGAGCCGTTAATTTTTTAGCGGGTGCGAAGGTAAAGCGCACATGAAAAAGCAGGGAGGTTCGCACCTCATTTTTTGGGTTTTTATGGTATTTGTCTGACATTTAGATGAGTATAACCTGAATTTTTGAAGAAATAGTGGCGATTTTAACAAAAAAGGGTAGATGATCCCCTTTTTTTAGGAGAAATCGCT # Right flank : ACTGCCGGATGAATTAGCCAAAAAACCACCACTTTCTCCTCGAAAGCGGTGGTTTTTTAAATCTCCACAACTCACTTAGACGACCACTTCCTAAAGTAAGTGGATTTAGCCATGAATGTCTACGACGTAAAGTCGCCTTCAAGACTGAAGTCTTCTATAAGCTCTTATGCTCAAGCATACTAAAAGGGACTGAATTTAACCCTCAATCATGAAGATATCGTGCTTTTCTTTCTTGGATTGATTGGTAATATAGTTTCGGGTCAGTTCTTCCGTCACATTTCCGACCGTAGCACAGAAGTATCTTCTCGCGCATAGGTGCTACCCCCAATAGCTTTTTCTTGAGTTCAGAAAACTCGTCTTGTAACAATCTAGACGACCTGCTCTTTAGGCATTGCATGATTTTGTTCGGTGCCAATCTTGGTGGGCACCGAGCAAATGAATGTGGTTTTTGTTCAAGTACGGACGCTTACGTTCAAAGCTAAAAGCGTGTGCCGTCTAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 77590-75641 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLYY01000010.1 Alkalihalobacillus shacheensis strain HNA-14 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 77589 31 100.0 35 ............................... TAAGGTCGCCGTTATGGACGCGCGGCGGTTTGTAA 77523 31 100.0 35 ............................... CGTTGCAAAGACACCCCTCCTTTGTAACACACAAA 77457 31 100.0 35 ............................... GCGTACATCGCCCGCTCTTTGGTTTTGTCTAAAAA 77391 30 96.8 36 ..-............................ GCGTACTCTATCCGCTAACCTCGCGTCATACACCGA T [77387] 77324 31 100.0 36 ............................... CCTTTTCGTTATATCCAGTTCTGCCGCTTTCATCCA 77257 31 100.0 35 ............................... ATTACGAGGTTAAGGCAGAATCGTTTAGATGGTTA 77191 31 100.0 36 ............................... AATCCTAGACAGTGCCAGCTCGTACACGTTTTCGTA 77124 31 100.0 37 ............................... TCGACGTAGAGTGGGGCTGGTTGTGTGGAAGACACGA 77056 31 100.0 35 ............................... CGACTAAGATCCACCGAGCCACCGATAGAAATTTA 76990 31 100.0 36 ............................... AAGAAACCAATTATGCGAAAATTATCTAATTCCGCA 76923 31 100.0 35 ............................... ACGCCAGAAGTACCCCTCGACTTTCTTTGCCGATA 76857 31 100.0 35 ............................... AGCATGAAGGTGGCGAGGTGACGATCACACCGCAA 76791 31 100.0 35 ............................... GCGCATGCGTTGCTCTTCGGATTGTTCCTGTAGGA 76725 31 100.0 35 ............................... AGGCGCCGCCGGTCACCTTATCGTCACAGTCGGTA 76659 31 100.0 35 ............................... TTTCCGATCGGTCTCGTCGTGGGTATCGTCGTCAA 76593 31 100.0 35 ............................... TTTGATGACAACTTTTTAACGCAGATTAATAGTTA 76527 31 100.0 35 ............................... GAGCTATGACTTTATAGACTGACTGCAATACGGTA 76461 31 100.0 35 ............................... TTCGATCTCCTCATCCGTGAGCTCTTCCTCTTCAA 76395 31 100.0 34 ............................... TGCCTTACACGAGGCTTCAGAGGAGGACGTAGAA 76330 31 100.0 36 ............................... ACGTATTGCATTCACGACGACATTACGCAACTACCA 76263 31 100.0 35 ............................... ATTTGTGCCGCTGCCCGCATAATCATCGGCCGCCA 76197 31 100.0 35 ............................... TTCCTTCGTTTCTGTAAATGGTAAATCTGGCTCAA 76131 31 100.0 35 ............................... CCTTCCGCATCGTACATAATGATGGTTCCTTGTAA 76065 31 100.0 34 ............................... GTTGATGGCATCAAAGGACGGGCGGGCCACTTCA 76000 31 100.0 35 ............................... TTCGCCGTCCCGTGTGAGTTGGCCCTCGCCTTGAA 75934 31 100.0 35 ............................... TCTGGACCAGGTATCTTCTGCTACTCGTTTTGGTA 75868 31 100.0 34 ............................... ACGATACAGGAGCGGTTGTGCATGAAGACTGCCA 75803 31 96.8 35 .......................G....... ACCATTTTTCCTCTGTAAAGCTCATAGAACGCCAA 75737 31 100.0 35 ............................... GAGTAAAGGTGGTTTTGCTGCTATTTACTACGGTG 75671 31 90.3 0 .............A..........AA..... | ========== ====== ====== ====== =============================== ===================================== ================== 30 31 99.5 35 TCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : CTCCCGCCTTCTTTTAAATTTGGAATTGATGAAGTCAGGGTTTCCTGCAGTTGTTATTAAAATGGAAAACCGACTAGCTTATTATGAAGCGTTAGATAAATCCCGTACCACAAAAGATTATCGTGATTTCATTCAGTTAATTGCAAAAGAAGTAGAAAATTCGCTAGATCTTTATTTAAGTGCTGTTTCCTAAGATATTCTAAAGAGGTTTGAGACTCTTGGATGTCTGTGAGTAATATGGAACTTAGGTAAAAGCTTTTGCAAGAAGAACGTTTCAAAATGGAAACGCTGAAGTTAAGCGTTTTGTGTGTAGATGATGGCTGGAGAGTTGGTGCGAATCCCAAGCGCACTTAAAATTCCTAGGGGATCCGCACTAAAAAATCAATTAATTGTGTAATAACGTGTAATAAAAGACGAGGGTTGAGCGCTTTATTTTATGAAATAGCCGTAGTATTCTATAATTGGTAATTTAACAGGTGATATCTGAGAGGTAATCGCTA # Right flank : TTACGCAAATGTTGAGCTCGAATTCTGCTCCTCGTTTAATGAACGGCGTTTAATTCACCTTCAAGTACAACGATGAAAAAAGCCGATGATTACGCTAATGATCATCGGCTCTGCTGTGCCTTAAAATTAAGGAGCGTCTCTTATGTTAGCCGTGGCATCGGCCCCGCCTTCGCCGACTACCCTAACAACCACTTTTGTTGTTCTACCTACTTTTATTATAATTGAAAACGCTTACAATATCAACCTTTGAAACAGAATGTTTTTCATGTCGAGATTTCTCTATTATTAGGAGCCTTTGACGGTTAAAAGGAATTTAAAAGCGGTATCGCTAATAAGTTTATGAACGATAGATTATGCCTGAACGAAAGTGGGGATGGTCATGAATGAGAAGCAACTTGAACGAGAATTAGTGAAAGATTTTGAAAGGAAACTGGAACGGAGTTTAAAGGAAGAAGAACTGAAGCTACTGGCAGAGATATCCCGAATGGCTGCAGAATATG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //