Array 1 972496-973845 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQAL01000010.1 Klebsiella oxytoca strain ICU1-2b contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 972496 28 100.0 32 ............................ AAAAACTGAGCGGCCGCAGAATGAAGTTGTAA 972556 28 100.0 32 ............................ TCATTTGGCGACGTGCCTTGTGCGCGCATTTC 972616 28 100.0 32 ............................ GTCAAAAGAATGATTTCCTGCACAGGGTTCAA 972676 28 100.0 32 ............................ AGGAGCGGGTCATATTCCACCGTCGCGGCTTT 972736 28 100.0 32 ............................ GGAAGACTGGCCTAATTATGAGGTGCGTTATC 972796 28 100.0 32 ............................ TGCAGCAGCGGGTAACGTTCCTGACGACGACC 972856 28 100.0 32 ............................ CAATACTCACCATTGATGAGCAACGATAAAAA 972916 28 100.0 32 ............................ GTAACCGCATGTCGGCTTTTGCTGCATGGTGG 972976 28 100.0 32 ............................ TTCGGCCATACCGCGATACGACGCTTAACCAG 973036 28 100.0 33 ............................ TCGACGCGCTGGCCTCGCTGCTGATTTCTACGA 973097 28 96.4 32 ...............A............ TACCGGACAACGATCACCCATTGTCATGTAAC 973157 28 100.0 32 ............................ TGTAATGGCATCGGGAGGCTGTCATGTGGATA 973217 28 100.0 32 ............................ GGCTGCGTCGGGACCCACCACATCGCCAGCAG 973277 28 96.4 32 ........T................... CCTGGCCCCGGCAGTATCTATGATGGTCAGGG 973337 28 100.0 32 ............................ GGAAGAAATCACCGCCATGCTTACCGCAGGAG 973397 28 100.0 32 ............................ TGCCGTGGCGGGGTTGGCTCCAGCCACAATCC 973457 28 100.0 33 ............................ TGCGGCTGCACGACCAGCGTCAGGGAAATCACT 973518 28 100.0 32 ............................ CTCTTCGCGTCTGCGATACCGGAAACGGAGAC 973578 28 100.0 32 ............................ ATGCACCGGTAGAAGAACGCTGATCAATTGCC 973638 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 973698 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 973758 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 973818 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCATCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGTTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCCAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGATAAAGAGAAAAATGCGCTGACCTATGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTTATTAAAGAGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AAGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACCGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAATGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGAAAAAGTGTCGGGTTCAGGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGGAACGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCAGTTAGCCAGGCTGCAATGCGTGAGTTCGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCCGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 982274-983262 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQAL01000010.1 Klebsiella oxytoca strain ICU1-2b contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 982274 28 100.0 32 ............................ TTATCCACGGCTTCCAGCAACTCGGGGTTTTC 982334 28 100.0 32 ............................ AAATGGGCCGCCAACGAAAGCAAGAGCACCTC 982394 28 100.0 32 ............................ AATACTGGAAGGATATTAAGCGTGGCGGTATT 982454 28 100.0 32 ............................ ATATCCGCCGCGCCGGATAAGCCTTGCTGCCC 982514 28 100.0 32 ............................ ATCGTGTCTGGGAGAATGTCTTTGCTCATAAT 982574 28 100.0 32 ............................ TGAAATTGATAGAAGGTTCTGAGCAAACCTGC 982634 28 100.0 32 ............................ ACGATGTGAACGCTATCGCTATGCACACCACT 982694 28 100.0 32 ............................ TCGGTGCGCAGTCCAGATATTGCGATATACAC 982754 28 100.0 32 ............................ ATTAAAACCAATAGTCTGACGATCCAGCGCCA 982814 28 96.4 32 ..........C................. AGATAGCACCGCCTGGGCGCATATCTTTCGCC 982874 28 100.0 32 ............................ CGATGCCTCCGATAAGAGAAAAGGCGTTCTCT 982934 28 100.0 32 ............................ CTGGAAACATAGCAAATGGCACCGTGTTACAA 982994 28 100.0 32 ............................ TCAAAAAGTACGGACGGTGGACGGTGAGCGAA 983054 28 100.0 32 ............................ ATTCGCGTTAACTACGAAGACAGTAACGGTAA 983114 28 100.0 32 ............................ AGATAGCCACCGCCGAGTAAGACGATTGCCCC 983174 28 100.0 33 ............................ CTGACCGGTATCAATTACGCGCAAATCCATTTG 983235 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGGCTGATGCGCCGCTCGGTGAGAAAAGGCTGGCTGACACAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCGACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCAAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTGACGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGATTTTTCAATCGCTAATTAAAACCCTTTTTTATGATGAATCTCTATCTTATTGATTTTATATAGTGATTTTATAAAAGTCGGAAAAAGGGTTGTGAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTATAGTGGTTAGGCTTCA # Right flank : ATCGTGGCGGTTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAGCGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //