Array 1 1795-1407 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIOO01000172.1 Vibrio cholerae strain P7-CHT61-04 172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1794 28 100.0 32 ............................ GTTAAGCCAGTCACTCCTAAGCTTGCTAACTT 1734 28 100.0 32 ............................ TGTACGTCTCTTTACGTACTCTATGTCGCTTT 1674 28 100.0 32 ............................ ATCGCGAGAGTCGCGGATTGACTTGTCGGTCT 1614 28 100.0 32 ............................ CTATCGCTATCTTGCAAATCCAAGCACCAGAC 1554 28 100.0 32 ............................ ACAAGAGCCGCGCCCATGCGGCCAAGCGTGGA 1494 28 100.0 32 ............................ TCAAATGCTCGGCGGTCAATCAACCATGTTTT 1434 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAAAAA # Left flank : GCTGTATGTTTCAGCGTGATTGCCTCATTGAGTAATTTCGCCAATGTGTGGTGAGCTGGGTTGTCGGAGAGGGTTTCCACATAGGCTGATTTGTAAGATGAAGCCTTGAATTGGTCAGAACATAGATAAAATTTGAGTCAGTTCTAATTCGAAAAACACTATGGTTTGGTCAATGATTTCAGTGAGTTATTATTGAGATGGTTCAAAGGTAAAGTGTTGAAGCTTAAGCATAACAAACGCCTCAAGAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTACGGCTGTTGTGTTTGAGTTTAGTGTTATGCGTTGTCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAGTTTTAAGTTATTGATTTATATTGATAATAAAACCAGTAAAAAATAAAAGGTTATTTTGGGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATAG # Right flank : TATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTTCGGTTGTTGTGTTTGAGTTTAGTGTTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTAGGTTGCTTCACAAAAGGAGTAACTTATGGACGTTAAGCAAGTTGAACAATACATTGCTGAGGTTTTGACAGAGAAGTTTGAATGTGAATTTGAGGTTGTGAGTGGTCACAGACACTTTGAATTCAGAAGTGCTGATTATGATTTTTCCTTCCCATTAATCTTTGTTGAGGCAACTAGCAAGCAGTCAGTTCAAAATAAGGTGAAATCTTGGATTGATAGGGATTTGAGTTTAATCAAACCGAACAGTCATGTGATTTATGATGCCAATGGTGTGATTCACGAAAGCTCCGTTCTAGCATAAATTCAAAGGATCAACACCTATCACATGAAACCCTTGTTCCTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 156970-152917 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIOO01000003.1 Vibrio cholerae strain P7-CHT61-04 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 156969 28 96.4 32 ...........C................ GCGATACGCCACAATACAAGACTCCGACCCAG 156909 28 96.4 32 ...........C................ GACAACGGTATCAACCTCAAAGCTAGAGATAA 156849 28 96.4 32 ...........C................ ATGGCGACACGCTCAGTGCTATTATCATGTGC 156789 28 96.4 32 ...........C................ GAGATAATGAACTCAATCGGTGGCGACTGGTG 156729 28 96.4 32 ...........C................ GTCAATAAAAAGTACATGACCATAAGCATTAG 156669 28 96.4 32 ...........C................ AGAAAGCAAGTTGACGGATGGGATCGCTGGGG 156609 28 96.4 32 ...........C................ GTAAATGGCGTTTATTGACGGCTCCATTTGTC 156549 28 96.4 32 ...........C................ AGTAACGGAAAGGATCCAAACATTTTCAAAAA 156489 28 96.4 33 ...........C................ CTGATTTGGTTCCGGCTGAGTACCCTGCTTTTT 156428 28 96.4 32 ...........C................ TCACTTGGGTCGTTGTACTCAACCACGGCTTT 156368 28 96.4 32 ...........C................ TGTCTGGATGTCAGCATATGATACTCAAAAGC 156308 28 96.4 32 ...........C................ AGAGGGCGCTTTGCTCGAAGAACCTGAGCCCG 156248 28 96.4 32 ...........C................ CTCCAGTGCTACTTTTTTCTTTTTAAGAAAGT 156188 28 96.4 32 ...........C................ CCACGCACCGAAAATGGCTTAGTTAAGCGCTT 156128 28 96.4 32 ...........C................ TCATCAACATCCGGCATCCAGTAATCTTTGTT 156068 28 96.4 32 ...........C................ TAGAGCCCCTGACAAAGTGGCATCAAACAAAA 156008 28 100.0 32 ............................ GCAACAGACGGGCGAAAGATAACCCACGGCGA 155948 28 100.0 33 ............................ CGCAAGGAGAAAGAGCGCAAGGGATGCGCTCCG 155887 28 100.0 32 ............................ TTTAGCAGCTCCCACGCGCCGCCCTCTGGATC 155827 28 100.0 32 ............................ GCAATATCTGCTTCTACTCGCTTTTTGTAAGC 155767 28 100.0 32 ............................ ATGTGGCGGCGGTCATGGCAATAGTGCTAATG 155707 28 100.0 32 ............................ CAAGCCAGCGTTGCCAGCCTGATGGCTCAACG 155647 28 100.0 32 ............................ TTTAGGGAAGTAATATTGCAAACCGCCTGTAT 155587 28 100.0 32 ............................ TGATGTGGGGGAATCGAGTATTTGATTCGATG 155527 28 100.0 33 ............................ CGCTGGCGTATTCCCCGCCGCAATATCTGCTTC 155466 28 100.0 32 ............................ CTACAGCGATGAGGTGATTCATGCGGGCATTG 155406 28 100.0 32 ............................ AATGGCGCAACTCACCAAGATGGTGATAGACA 155346 28 100.0 32 ............................ AATAAGCCTGCTTGAGCCTGAATTGTTCATAC 155286 28 100.0 32 ............................ TGTTAGGCTTTCGGGTTGTACTGCTCTAGGTA 155226 28 100.0 32 ............................ GTCATAAATCTTCCTTAGTTGCTTTTGGGTGG 155166 28 100.0 32 ............................ GCAATAGAGGATTGCAAGCAATGGAACAAAAC 155106 28 100.0 32 ............................ TTCTGCACCTGGCACGAAGGCTTTAAGCCCTT 155046 28 100.0 32 ............................ AATCGAATCCTTGGCGCGTTGTAAGCGATCAG 154986 28 100.0 32 ............................ AGAAGACTACACGCTTATTGAGCCAGTGGGTG 154926 28 100.0 32 ............................ GTTTAGGGTGTAGATCTCTACCGACTCGTGCA 154866 28 100.0 32 ............................ TCCTGCGAAATCAGACCGCTGGCCTCAGCTTC 154806 28 100.0 32 ............................ GATTTGGGATACCAAGAAAATCCCGTGGAAAC 154746 28 100.0 32 ............................ ATCAGCACATCATTGGCTTCATCGCTGTAGGC 154686 28 100.0 32 ............................ AATCAGCCGCAGGGCGCGGCTGTTGGAAAGGT 154626 28 100.0 32 ............................ ACAATGTGGAATCACCTGCTTCAACCGCATCC 154566 28 100.0 32 ............................ GAATACCGCAATGCCATCGTTCGCCGCAATGG 154506 28 100.0 32 ............................ TTCGGTACCGACGAAGCAATGGCCTTGATTAA 154446 28 100.0 32 ............................ ACAGATACGGAAGAAGAACTGTTGATGTACGA 154386 28 100.0 33 ............................ TTTTATATAAGGATTGTTAATTATGGTTTCTGA 154325 28 100.0 33 ............................ CATCACGCCGCCGTGGGTGTGAGTTGCGAGTGT 154264 28 100.0 32 ............................ GTAACGAATGCAGACGATAGCAGCCGATAAAT 154204 28 100.0 32 ............................ ACCATGGGGGGAGGCGAAGCCGCCACGAAATA 154144 28 100.0 32 ............................ GTGATAATGCGGTGCTGATGGTGGTCGCGCCA 154084 28 100.0 32 ............................ GTTGAGAACTGCATCTTCAAAAGCTTCACCAC 154024 28 100.0 32 ............................ TGCAGAAATCGAGCTGTTCGAGTTCCCTTGGC 153964 28 100.0 32 ............................ CAGCGCGAGTCATGACCAATCAAGAACTGGTT 153904 28 100.0 32 ............................ GACCATAAGTTATCTGACCTGTTGGGCGGCTT 153844 28 100.0 32 ............................ ATGAGAGGATATTGGCCGCAAGCGTAGCCAAG 153784 28 100.0 32 ............................ TTGACGATTTATACAGCTTCCATCTGAAAAAA 153724 28 100.0 32 ............................ AGCTCATTTCTAAGCTTCTTGCTGTGTAAGTC 153664 28 100.0 32 ............................ AGTGGCCCGAAATGGATTTGCTGCTCAAACGT 153604 28 100.0 32 ............................ AACACGATTGGCACGATCAAAGGGTGGTGGGA 153544 28 100.0 32 ............................ ATTACTACACTGCATCAAAAGAACGTGCATCG 153484 28 100.0 32 ............................ TAATCCAGAGGGAGTGCCATTTGATAACCGCG 153424 28 96.4 32 ...........C................ GCAGGGAGAAGTGCAACAAAGGCGCAAAGCGC 153364 28 96.4 32 ...........C................ CGAACTAAAAAGTGTAGGCTCAATAGTCGGTA 153304 28 96.4 32 ...........C................ ACCAGGCCCGAACCGCGAGATCGATTTCATCC 153244 28 96.4 32 ...........C................ ATCCTGCGCTGACCTTTGCCGACTTCTTCGGT 153184 28 96.4 32 ...........C................ AAGCATGATAAGTAAAATGAGAACTGGGATAC 153124 28 96.4 32 ...........C................ TCAAAGAGCAACAGGTATTTGTTTTGTCGGCT 153064 28 96.4 32 ...........C................ TGCTGCCATAGTTAACCCGCCTTTTTCTTCAT 153004 28 96.4 32 ...........C................ AGCCGTTGACGCCGTCCACATCTGCTACATGC 152944 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================= ================== 68 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTGACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAGTCAATATCGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCACCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTGCGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCGGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGACCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //