Array 1 268937-269082 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIP01000002.1 Vibrio fluvialis strain NCTC11327, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================= ================== 268937 27 100.0 33 ........................... TATGGCGAGCGACGGAAACCGTAAATGTGAAGT 268997 27 100.0 33 ........................... TTTGCACGGGCGCAAGCCGTTCCGGACGTTCAA 269057 26 88.9 0 ....................A.T-... | ========== ====== ====== ====== =========================== ================================= ================== 3 27 96.3 34 GTTCACCGCCGCATAGGCAGCTGATAA # Left flank : GCTGACATGACAGCGCTTGGATACTTCAACATATCGGAGTCAACAATGGTTCCTGAAGAATGCCATCTGGCTGTTTTTCGACGCAATCAAAAAATCGACCAAGCGACACCGAATGGGCAAAGAATCAGAGCCGAACGTTTGGCGAAACGCGCTAGAGATAGAGGCGATTCACCTACTCGATTTACCCCAGAAGACCTTTTGTTTGAACATTATCATTCTATACCGATAACCAGTACCCGTAGTGGTCAATCATTCAGGTTAAACTTGCAATATCAACAACTAGATACCGTGGCACATGGAAGATGGGCATTCTCAAGCTACGGGCTTGCAAATAAAGAACTTGAAAGTTGCCCTGTTCCCGTCATTTGACCAATTTAATATTCATGCCCTATAATTTCCTGATTTTTAAACAAAAAAATTAACCATTAAAATAAAAGGTATTATTTTTGCTTTACCGATTAATAGATTGATAAATATACACTATATTTAAATTGACCATT # Right flank : ACTCACAAATAGTCTTTTAAAGACTGTTTGCCTTGCTAATAATTGAGGATTGTAATCCTCAATACTACTGCAAAAGTAGTTGATAACAAACGTACCACTTTCATTCGAGCTCGTGATCAGGTACTACTGAATAAGTAGATATTGAAAAATTGGCCAGCACATTCAAATAGTTATCGACATTCCGTATTTTTAAGACGGAGAACCTCGAGTATCACTCCCAAGAATCATGGCTGCCGAACCTCTCACAGCTGTACTCGTTACGCCTACCCGCGACAACCGGGCCTTTTTATACTATTAATTGTCAATTAGAAGCGACTTTTCTTTAGTATGTCGGTGAATCATGTTGCCATATCGTGTGAATATACTTTGTACCCTGATAAGAGGTTTCAAACTCAATGTCCTGTATAGAGAAACTGTGGTCATCTAAAATTGCCCACGGTTTTAGAGTTTTCCCAATACAGCCTTTCAGATTTATTGAGTGCCAGCCCGCCGTTATATTG # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCATAGGCAGCTGATAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1474334-1472945 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIP01000002.1 Vibrio fluvialis strain NCTC11327, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1474333 28 100.0 32 ............................ CCAATAGGGGCTTTTATTTTACCTCGTCAAAT 1474273 28 100.0 32 ............................ AAACGTGCTTCTGTGGAACTGGCTCAGATTAA 1474213 28 100.0 32 ............................ ACTTTGTTTTTTCCACATATCCATGCGTAGCC 1474153 28 100.0 32 ............................ GCCAGTACCGGACGAAGAAACAATCAATAACA 1474093 28 100.0 32 ............................ TTGTATTCGCAAGCGTAGCGCGCCAGTGTTTG 1474033 28 100.0 32 ............................ AAGACGAGGCGTTTCAACTGGTGGCACGACGT 1473973 28 100.0 32 ............................ ATATTGATCGGGTTAACCACACATTTTACATC 1473913 28 100.0 32 ............................ TATGAAGTCGAACGACGTGAACCGGATTACGA 1473853 28 100.0 32 ............................ AGGCACACCGGAAGATATGGCTGGTGCGATCC 1473793 28 100.0 32 ............................ TTTACGGTTCCGTCACGGTTCTGAATTACCAC 1473733 28 100.0 32 ............................ TTCAATGTCTGCCGCAAAACCGATTTTCGCGA 1473673 28 100.0 32 ............................ AGCCCAACATAACGGTTGCCAAGCGTATCGAT 1473613 28 100.0 32 ............................ TGACCATTGAATTAAGTTCCGATCGTGTTTAA 1473553 28 100.0 32 ............................ TTTTCGTCGCTGGCGACGGACTTGATTCGTTT 1473493 28 100.0 32 ............................ CCGCAGGGATAAGGGAGCAAGCCTGCGACCGA 1473433 28 100.0 32 ............................ GTGATGACCAAGCAGGAATAGCCCTTGCTCAT 1473373 28 100.0 32 ............................ AAATACCTGCAGGACTACATCAAAACCCAATG 1473313 28 96.4 32 ........................A... GCAATCAAAAGAAGTGGTGACGGTGATTGAAA 1473253 28 100.0 32 ............................ TGCAGTATGTAATGTTGGGTCGGTTGACTCCG 1473193 28 96.4 32 .............G.............. TAAACCTGTTTACCTGGTGTTAATGAGTGCCT 1473133 28 100.0 32 ............................ ATTCTAAAGCGCACGACAAACGTTCTTAAATC 1473073 28 89.3 13 .........................CTG TATATGAATTTCT Deletion [1473033] 1473032 28 92.9 32 ...T................G....... TTGACGAAGTACTTTACCCCAACTGCCCGCTA 1472972 28 71.4 0 .C.......TAC.......AGG.....T | ========== ====== ====== ====== ============================ ================================ ================== 24 28 97.8 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAACGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGCAAACCGCTGGTGGAATGTCTAGCGGATTTGCGACAAAGCAAGCCGACAGCATTGTGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAATAGCAAGTTTCCGCTGTTTATTCAGATGCAGCAGCAAAGTACATCACAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGCCAATCAGCATTGGCTACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTATTTTTTACCCTTTATTTTTGCTATTTAAAAATATGCTTTAAATACAAATGGTTGCAAATGGTGGTTTTTAACAGGGCAAAAATGCATTTTTCATCCTAACTACTTGTTGCAGCATTCTTTTATAGAATTATTTTATT # Right flank : TAAAACGGGATTCATGGCAAACGGTCGTGGAAGTTGTATCTTACACAAAAACCTAACGACGTCGATATCAATAGGTTTTTATGTGTATTTATTGGTATATTTAGTGCGTTATTCTGAATTGGTTGCAAGAGACCAACATTAAATTTTTCATAATTGTTTATTGATTTGGTTAAATCATACGTTATTTTCGATAACAACAATGACATTTTAGGTTCGCAAGTATCCAATGATGTTTTATTTCCAGCATTACTATTTCTTACATTGCCACAAAGCATCCTTGTTCATATTACCCAACTAGTGACAGTGTCTCCGTCATTACTTGATACCCAATCTTCTCGCTAGGCGGTGTAGGTTTCCACTATCCAGTTCCAATTGTCGAGCCGTCGCTGCCCAGTTGCCTTGGTTATGATTGAGCGTTTGAACAATGATTTTTTTTTGATACCTATCCGTTGCTTCTTTAAGCCCCATACCTGATTCACTAATCGGCGAAATGTTGGTTG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //