Array 1 281804-284235 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVKH01000002.1 Akkermansia muciniphila strain BIOML-A39 scaffold2_size384703, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 281804 31 100.0 34 ............................... TTTTAGTTTAACTTATTTTATTACCTTGTCAACT 281869 31 100.0 34 ............................... AACGTTTTTGGTAGTCACAATGTGGAATCCGTTG 281934 31 100.0 33 ............................... TATCTTGTTGTCAAATGTTTTTTGTTTTTGTAT 281998 31 100.0 34 ............................... ATCGCAAAAGTCACGATAGGAACCGCAATCGGAT 282063 31 100.0 33 ............................... CTATTGTTTAATGTTTAGTGTTTTATTGTTTGG 282127 31 100.0 33 ............................... CATGTCATGCCGTTTTCGTTGGTTTTCAGTGGA 282191 31 100.0 35 ............................... ATGATTTAGTTTCCTTTCTTTTAGGGGGTTATGCG 282257 31 100.0 34 ............................... AACATTGCGGATGAATAACTTATGATTGTGTCAT 282322 31 100.0 34 ............................... AGCGTCCAGAATATAGGCGTAGGCTTCAACATTT 282387 31 100.0 33 ............................... ATCCTACGGGAGACGTCGACACAATCATGGAGA 282451 31 100.0 34 ............................... AGGAATATGCTGACCTTAAATCCTTCTTCACCCG 282516 31 100.0 34 ............................... ATACACCGCCCATGTGAGAGTTTCTCCAGCGTTT 282581 31 100.0 34 ............................... CATCTTGTTGTTCATAATGTTTTCCTTTCTTTTA 282646 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCCGCCGGGGTTAA 282711 31 100.0 34 ............................... AACGTAAGCGAAAAGGCCCGCCCCCTCGTAAAAG 282776 31 100.0 34 ............................... TGCGTCATCATCTACGTTAAAGGCCTTGCGGGCC 282841 31 100.0 33 ............................... AAGGCCAAAAGAAGCCAAAAGAATCCAAAGGAA 282905 31 100.0 34 ............................... GCACCGGAATCGGTATATTTCGGACGGCCTGACC 282970 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAG 283035 31 100.0 34 ............................... AAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAG 283100 31 100.0 34 ............................... TCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTA 283165 31 100.0 34 ............................... CTACTAAACCTATCGGAATTGTGATTGAAGGCAT 283230 31 100.0 34 ............................... CGTTTCCCTGGTGGGGTAGATAACGGTGGAATAT 283295 31 100.0 34 ............................... AATTTGTATGACACAATCGTAAGTTATTCAGCAT 283360 31 100.0 34 ............................... TGTTTCCCCGGTGGGGTAAATAACGGAGGCATAT 283425 31 100.0 34 ............................... CCGCCGTAGGACAATCTCCCATGTGCTATGCGCC 283490 31 100.0 34 ............................... TATAGCCAATTGTGAGAGTTTCCGGTTTGTAACA 283555 31 100.0 34 ............................... TGCAGCCAGGACTAGGGATAAGATTCCCGCGCCG 283620 31 100.0 34 ............................... AGCATCTAAAATATGTGCGTAAGCTTCGACACGG 283685 31 100.0 34 ............................... ACATTATATCATAAAAATAAGAGAGTTATGAACA 283750 31 100.0 34 ............................... GGTCCCTACAAATTACCAAGTCCCCCTTCTTAAA 283815 31 100.0 34 ............................... TTATCGTCCAACGAAATAATGACGTCCTTCCACG 283880 31 100.0 34 ............................... TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA 283945 31 100.0 34 ............................... CGGAATGCTCGACGGCAATCTTCAACGCGTTATT 284010 31 100.0 34 ............................... TTTTTAGCCGGCGCCGCAACAGGGGCGGCTTCCG 284075 31 100.0 34 ............................... TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA 284140 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 284205 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== =================================== ================== 38 31 99.7 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAAGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 118224-122744 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVKH01000004.1 Akkermansia muciniphila strain BIOML-A39 scaffold4_size504063, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 118224 33 100.0 34 ................................. AGGAGAATTGTTGTAACTGCTTAATGGTTATACA 118291 33 100.0 34 ................................. ACCCGTAGGTAAAATAGACCAGACCGCCGTTACA 118358 33 100.0 34 ................................. GATATATTTGCATGGGACGTTGCCCCCGCCCTCG 118425 33 100.0 34 ................................. ATCCGCAATGTTAAAGGCTCTACGGGCGGCGTAG 118492 33 100.0 34 ................................. CCATGTGTGCACCATGTCCAAATCCTCAAGGGCG 118559 33 100.0 34 ................................. TGAAACGTCATAGTTAACGCCTTCCCATGTGTGC 118626 33 100.0 34 ................................. CTTTCTTTTAGGGGGTTATGCGGGGGTGATTCCC 118693 33 100.0 34 ................................. AGAAGGGCCGGGGTTAAACCCGGCTGACTAGCTT 118760 33 100.0 34 ................................. CCATGTGTGCACCATGTCCAAATCCTCAAGGGCG 118827 33 100.0 34 ................................. TGAAACGTCATAGTTAACGCCCTGCCACATGTGC 118894 33 100.0 34 ................................. TCCATCTTGCAGTTTGATTTGAGTGATCATGATT 118961 33 100.0 34 ................................. AGTGGGTGTGAGGTAGTAGCGGTGGACGAAAAAC 119028 33 100.0 34 ................................. CCCGGTAGGTAAAATAGACCAGACCGCCGTTACA 119095 33 100.0 33 ................................. TGAGACGTCATAGTTAACGCCCTGCCACATGTG 119161 33 100.0 34 ................................. TTTAGTTAGTGGTTTTGTTGTCCGGGGGTTGCCC 119228 33 100.0 34 ................................. CGTCACCTATGGGGCGGGGTTGCCGTGTGATAAG 119295 33 100.0 34 ................................. CACACATGCACCATGTCCAAATCCTCAAGGGCGG 119362 33 100.0 34 ................................. TGGAACAAGGAATCCCTACTAAAATGGTAGGGAT 119429 33 100.0 34 ................................. CATGTCATGCCGTTTTCGTTGGTTTTAAGTGGAT 119496 33 100.0 34 ................................. TTGTTGGTGGTTTTAGTTTAACTGATTTTATTAT 119563 33 100.0 34 ................................. TCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 119630 33 100.0 34 ................................. TTCATAATGTTTCCTTTCTTGTTGGTGGTTTTAG 119697 33 100.0 33 ................................. CACATATGCACCATGTCCAAATCCTCAAGGGCG 119763 33 100.0 34 ................................. TCGCATGTTTGTGTAAGTCTCCTTGTGGCTCTTA 119830 33 100.0 34 ................................. CATATCAGGCCGTTTTCGTTGGTTTTCAGCGGAT 119897 33 100.0 34 ................................. ACCGCAAAAGTCACGATAGGAACCGCAATCGGAC 119964 33 100.0 35 ................................. CCGCCTCGTAGGTCTCGCATTCCGCTGGTGTAAGA 120032 33 100.0 34 ................................. CCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 120099 33 100.0 34 ................................. AACGGCCCCCGTAGGATAAATGACGGTGCTATAT 120166 33 100.0 35 ................................. TATGCGGACTGAGGTAGGCAGGCCGGTAGCATATA 120234 33 100.0 32 ................................. GCGTCCAGAATATAGGCGTAGGCTTCAACATT 120299 33 100.0 35 ................................. CCCGGTAGGCAAGATTGACCACACCGCCGTGACAC 120367 33 100.0 33 ................................. GATTCATGGCAACGGGGGTAAGTGGCTTTTCGC 120433 33 100.0 33 ................................. TGCCAGTAATAGCAAGTGTAAGGGCCGTTTCTT 120499 33 100.0 34 ................................. GCACCGGAATCGGTATATTTCGGACGGCCTGACC 120566 33 100.0 34 ................................. AATATCCCTGATGCTGAATAACAAAACCACTAAA 120633 33 100.0 34 ................................. ATAATTGTTTCCTTTCTTTAGTGGTTTTAGTTTA 120700 33 100.0 34 ................................. CGGACGGCCTGACCCCTCCACCAGCAACGGAATC 120767 33 100.0 34 ................................. TCTTAGCGAAAAGCCGGATTCCTTTCCAGGTCAT 120834 33 100.0 33 ................................. TTGGTAGTCACAACATGAAAGCCGTTATGCCTT 120900 33 100.0 34 ................................. CCTTCCATTCACCCCGGATGACTATTTCCGAGGA 120967 33 100.0 34 ................................. CCTGGGATGTTGCCCCCGCCCTTGCGGATTTGGA 121034 33 100.0 34 ................................. ACCTTCTTGCAATTTGATTTGATTGTTCATTGTT 121101 33 100.0 34 ................................. CCCGGTCTCTTATATAGTGAGGGGAGTTCTTTTG 121168 33 100.0 34 ................................. AAGAAATTGAGGATTCAAACTACCGCCTTTGCGA 121235 33 100.0 34 ................................. TCCTGGGACGTTGCCCCCGCCCTTGCGGATTTGG 121302 33 100.0 34 ................................. CCCGGAGACCAAGGCATCCCATTTCCCTACATGT 121369 33 100.0 34 ................................. CGGTGTGGGAGATATACCGTTTCCGTTGCATAAC 121436 33 100.0 34 ................................. TGCCAGCTTGCGAACCTTTATGGAATTGAGATTG 121503 33 100.0 35 ................................. TCCTATCGAACGCACGTTGCCACCATTGACCGAGC 121571 33 100.0 34 ................................. CCGTGACAGGGCGGGGGCGTCATCATGCGGGTTC 121638 33 100.0 35 ................................. ATCTTCCACACGTGCCAAGTAACTGAGGGCATAGG 121706 33 100.0 33 ................................. CGGCACCGTTTTCGTAGACCGCCCATGTGAGAG 121772 33 100.0 34 ................................. ATCATCCGCAATGTTGAAGGCCTTGCGGGCCGCA 121839 33 100.0 35 ................................. CGTGGGATAGGGTGAATCGTGAATCCAAAGGAATC 121907 33 100.0 34 ................................. TTGCGGAAACAATAGACCGCCCTGTTGACCGCCC 121974 33 100.0 34 ................................. AATATCGTCCATTTGCCGGGTAGTGGTTTGTGAA 122041 33 100.0 34 ................................. ATCGTACATGGGCAAGCCATAATCGGAACAAAAA 122108 33 100.0 35 ................................. CCCGGTGCGGGTGATTTGCGTGTAGGCAACCGGCC 122176 33 100.0 34 ................................. AGCTTCAACGTTGAACGCGCGGCGGGCCGCATAT 122243 33 100.0 33 ................................. AATTTGATTTGATTATTCATTGTTTTATTTCTT 122309 33 100.0 34 ................................. TAATCCAGAAGTTAATGATATCACGGGGACGGGG 122376 33 100.0 34 ................................. CATGACATAGAACGCACGTACCTTCCGTCTAATC 122443 33 100.0 34 ................................. CCCGGTGGGTAATATGGACCATACCGCTGTGACA 122510 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 122576 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 122643 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [122662] 122712 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 68 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CCTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //