Array 1 11890-13183 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAJHMU010000014.1 Aerococcus urinae isolate Au-50-U14, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
     11890	    32	 100.0	    34	................................	AGTATCGTAATTTAGTTTTCTTTTGCAGATCTTG   	
     11956	    32	 100.0	    35	................................	ATCTTCTCGTGATACTGACAAGGAAGCGACTAAAG  	
     12023	    32	 100.0	    35	................................	TTGGGTGTAAAAGCATGCCCCTTCATCGTAAATTT  	
     12090	    32	 100.0	    35	................................	TTTGTCCCACTCAAAATCCGATACCTGCATGGCAA  	
     12157	    32	 100.0	    35	................................	TCATTGTTGTCAAACCATTGTTTTAAGGTCTTCCA  	
     12224	    32	 100.0	    37	................................	ATGAGCTCTTTGCCGGCGTTGATTACGTCCTTAACGG	
     12293	    32	 100.0	    34	................................	ATCGCCCACAAGCTGGGGTTTCCCGATTAGCTCA   	
     12359	    32	 100.0	    35	................................	CGCTCTTCGGATAAACCCATTTGTTTACCATGATC  	
     12426	    32	 100.0	    34	................................	TTACGCGGGTAGTGCTGGGAACAGCTTTGGCTGG   	
     12492	    32	 100.0	    33	................................	CGAAAGCCCCACCTACAATAAATAGGATATTAG    	
     12557	    32	 100.0	    34	................................	TTCTTTTTTACTTCTTAAACTACTTAAAGCCTTT   	
     12623	    32	 100.0	    33	................................	AACATGTCTTCGATCTGATCGATCTGCTTTTGC    	
     12688	    32	  96.9	    35	..........T.....................	TCTTAATTGCTTCACTACGCGTGAAAATACTTGAC  	
     12755	    32	  96.9	    34	..........T.....................	ACACCAGAGGAATACAAGCAAGGCAAGCGAGTGA   	
     12821	    32	  93.8	    34	................T.T.............	CATGAGACAGGGACTTATAAAGATCCGCCCCGAC   	
     12887	    32	  90.6	    34	..............A.A....A..........	CAGCCACCCTTAGTGTCTTTGGACGAGACTTCGA   	
     12953	    32	  93.8	    34	.............T.............T....	TCCTATAATCCAAAATCAATAGAGTAAAATTGAG   	
     13019	    32	  90.6	    35	T.........T.A...................	GACTAGATCACCATTAGTATCATAAACGCTTGTAT  	
     13086	    32	  93.8	    34	..........T.....T...............	CACTATTTGTTAGAGCGAATCAAGTGTTATCTGA   	
     13152	    32	  87.5	     0	..........T.A....A...........T..	|                                    	
==========	======	======	======	================================	=====================================	==================
        20	    32	  97.2	    34	GTCGCAGGCTACGCGCCTGCGTGGATTGAAAT	                                     	       

# Left flank :   AGCTATTGGCAAGGTATATCCGTGGAGACATTGACTACTATCCGGCATTTATTAGTTAAAGGTGATTTGAGATGATGGTGTTAATTACTTATGACGTGAATACAGAAAGTAAGGCTGGCCAGAAACGCTTACGCAAGGTAGCTAAAGTTTGTGTTGATTATGGTCAACGGGTTCAAAATTCTGTTTTTGAATGTAGTTTGGATCCTGGGCAATTTGCACTCGTTAAATCGAAGTTAGATGATATCATAGATAACGAGATCGATTCGATCCGCTTCTATAATTTAGGTAAGAACTGGGATCATCGAGTACAGACTTTAGGACGGGACGATACGTATCACCCTGAAAAGGATGTCTTACTCCTATAACGAACCTCAAGCACACAGATTTATAGTGAAGGCTTCGGATGAAAATTGGCATTAAAAATATAGTATAAGTGATTATTTTGCTCTTTTTGTTCCACTTATATTATGAAAAAAGGATGAAAACTTATAAAAAGAGCT
# Right flank :  TTTACATGCAGCTAAGTGGTTCAAATCAGGTACAAAGTGCAGGTTTTCTTTCAGCAAATACTTGACTATTTACACCAAGAAATCAGCCCTTACCAGCTCCACCAACAGAGAGCCTAACAAGGGCTTTTTCTATTGCGGCGACTCGCAAAGGAACTAAAATTATTTAACGGTTCCTAAAAATAAATCATAACACCACTGAAACCGATCATCGTTGATCTTTTTTACTAAGTTGACAGTGGCACTTAGACAGGCTAAACTATCAGTAAATCAAAACATTATTAAGGAGATTACATCATGACTTTAGTATTCATTTCTTGGCAAGGCTGGCGTAGAGTAAAGTGAGATAACTAAGAACGGTTAGACTCGCTTTATTTTGGTTACCCCAATTGAAGAGGAGTCTATGCCGGATGTAATCGAAGAGAATGAAGCCGCATAGATGGCGGTTATGTGAGACTGTGATTTTTTACACAAGTTCACATAACCTTTCTATGCGGCTTTTT

# Questionable array : NO	 Score: 9.12
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCAGGCTACGCGCCTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCAAGCTACACGCTTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.30,-5.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-16] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [10.05,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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