Array 1 21715-22467 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAHLHM010000004.1 Streptococcus equi subsp. zooepidemicus strain SEZ_14-106 tig00000015, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence           	Spacer_Sequence                           	Insertion/Deletion
==========	======	======	======	==========================	==========================================	==================
     21715	    26	 100.0	    39	..........................	AGTACACTAAACCAGCAGAACTTAGAGGATTTAGTCTCG   	
     21780	    26	 100.0	    41	..........................	TTGTGCAATGGCATTGCTATTTGATAGGGCCCCACGTCTCG 	
     21847	    26	 100.0	    40	..........................	GTTATTGTTTCTCGGATTGTTTTTGTAAGGCTTTGTCTCG  	
     21913	    26	 100.0	    40	..........................	TTCTTTCCGATAATATGAAGCTAATGAAAATTATGTCTCG  	
     21979	    26	 100.0	    40	..........................	TAAACCAATTCCAAAGCTAATTTTTCAAGAGCTGGTCTCG  	
     22045	    26	 100.0	    40	..........................	CATTAAGATATAGATCAAAAGCGTGTTGTAATCTGTCTCG  	
     22111	    26	 100.0	    39	..........................	ATAGGCTACTCCTTTTTATACTTTTTTATTTTCGTCTCG   	
     22176	    26	 100.0	    40	..........................	TCTATTCCTCTTTTGCTTATTTTTTGATAAATCCGTCTCG  	
     22242	    26	 100.0	    39	..........................	CCGATGACATCGCAACCTAACCAATTATACAACGTCTCG   	
     22307	    26	 100.0	    41	..........................	TGAAATAGCAAACTGTATAGCATCACTATAGCCATGTCTCG 	
     22374	    26	 100.0	    42	..........................	TTGGAATCAAACCTAACATCTGAATGTGTTAAGGAAGTCTCG	
     22442	    26	 100.0	     0	..........................	|                                         	
==========	======	======	======	==========================	==========================================	==================
        12	    26	 100.0	    40	CCCCATACGGGCGAGTGGATTGAAAT	                                          	       

# Left flank :   TATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACGGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGGGTCACTCATAAAATGCTGTGAGACTCGCGCTAAAATAAGCTAAAAAATAGAGAAATGGGAGGTTATAGCTAAATATGTTATTAGCTAGCCTGTATCATTTCTCTATAAACTGTGCTATACTGCGCAGTCTCG
# Right flank :  TTTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTTGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGCTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTGTCATGTTCAAAGCAAGCATAGATAAGTTTCTTGAAATTGTCAAAATTTATGTACCTAAAAGCATTGCATTTGATGCCTTTGATAAATTTGTTAGTCGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATTAAGGTGTTCAAAGCTGTTTTGAAGGGGTGATTGAGATGAGGCATAACTCAAAGAAGAGCTCTGTATTCTTTTCTTGCAAATGAAAAAGAGGCAGCTGATAAAGGTCATAATAGCC

# Questionable array : NO	 Score: 9.26
# 	Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCCCATACGGGCGAGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-6.80,-7.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.27,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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