Array 1 3048501-3050388 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM011124.1 Pannonibacter phragmitetus strain H1-4 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3048501 36 88.9 30 AGAT................................ ACTTGTCCTTCGTCGGCGGCACGCTCGACG 3048567 36 97.2 30 ........G........................... ATGCGCCGCATGCACTCCGCCGCCTCCGGC 3048633 36 100.0 30 .................................... TGTCGGCGCGGTCGGCGGTGTCGTTTATTT 3048699 36 100.0 30 .................................... TCGCTGTGGTCCAGCCTGGCGCAGGCTTCG 3048765 36 100.0 30 .................................... ATGTCAATGATGCCATGGGCATCGCACGTC 3048831 36 100.0 31 .................................... TTAGAGGATCGCATGGACAATCTGGCAATCA 3048898 36 100.0 30 .................................... CCGGGCCTATGGCTGGCGACACGATAGCGT 3048964 36 100.0 30 .................................... GCATCCCCTCGAACCCCGGCCAGCCCTTGA 3049030 36 100.0 30 .................................... ATGGCCGCATCGCGTGGTACTGGACGCCGC 3049096 36 97.2 30 ......................A............. TCCGGCAACAGTACAGTGCGCCGTAGGATT 3049162 36 100.0 31 .................................... GCAGGCTCCTGAAAGACGGTTCCGACCGGCC 3049229 36 100.0 31 .................................... TTGGTATTCCTCGAGGGTGGCCAAGCGTACT 3049296 36 100.0 30 .................................... CCCTGTCGATCTTCCGTCGCTCCGCCGACT 3049362 36 100.0 30 .................................... CTTGGGTCGAAGCTCCAGGAAAGGGGTTTC 3049428 36 100.0 30 .................................... CCACGAGACCTAGCCCCAGTGACACTGCAA 3049494 36 100.0 30 .................................... ACGAAACCTGCCGCATCGGCGAGGTCTCAT 3049560 36 100.0 30 .................................... GCGCGACACCGGCCGCCGTTGCCCGCTGCG 3049626 36 100.0 30 .................................... CCCCCTCCTGATAGCCCGGCTCCACGGCCT 3049692 36 100.0 30 .................................... CAGCTCTGCATTCTGGAATTGCAGCACTTC 3049758 36 100.0 30 .................................... ATGCCGTCTGGGCCATTGCCGTTGATGACA 3049824 36 100.0 30 .................................... CCGACTGGCTCGCCTGATAGAGCCCTCTAC 3049890 36 100.0 31 .................................... ACATCCTCGCTGATATGGCGGACACGGATAG 3049957 36 100.0 30 .................................... TCGCACTTGGGGCAATGCAGAACAGCGGCC 3050023 36 100.0 30 .................................... CGTCACCCCAGACCGGCCCGAGGTGGAACA 3050089 36 100.0 30 .................................... GAGGCCAAGCGCAACCCCGCCGCACTTGGC 3050155 36 100.0 30 .................................... CCAGCCGGTCAGCGGTCAGCGCCGCCTCCA 3050221 36 100.0 30 .................................... TGATATGCTTCACGCTGCGCAGCGGCAGGC 3050287 36 100.0 30 .................................... ACCTGTCTGTTCTTTGACCTGTGAAAATGT 3050353 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.4 30 GCCGTGGCTTCCCTACCGATTTCCCTGTGGTAGGCT # Left flank : TCCATCAGCTCCCGCTCGGCCGGCAGCCGGTCACCGGCCTTCAGTCCGGCCTGCGAGACATAAGCTGCCAGCGCTTCCGTCACCTGGCGCACCCGGTCCATGGGCGCCAGCGGCGCGATCACCGGTCTGCTGCTCTCCCCGCTGCCCCTCATGCCGCCCCCGTTCCATAGATCCAAATTGGTCTGACATCTTACCAAAACGGCTGCATGGAAGTTTGTCAAGGGGCGTTCAGGCCAGGGCTCCGGACGGCCGGCGCCTCCAGCCCCCAAAGGCCCAAGCGCCACAACGCCTTAACCGGCATCCGCGGTTTCAGGTCCCCTTGCAGCAGATATGCCGACGCCCGCGGCCAATAACCGGCCGGGAGGGCATACGGATCGGGGCGGAGAACTGGCGGCGGTATTCAGAGGATGGTGGCTGATGCAGTCTGGTCAGGGTGCTGGGAAGTCACGTCTTGTCATCAAACCGGACAAGCTGCCTTTAAGGGATGCCCAAGGTTGCCA # Right flank : TGCCTTTGGCACAAGGTGTTGTTTTGTTGAGATAAAAGGCTCCCAGGGCGGAGAGGAAATCAGAGGAGAACAAGCTGTTCACTCGCCTTGCGCTCGGTTTTGGTTGATTCGCCAACAAGCAGTTTCATTCGGGCATATTGCTTGTCCGTGATCTGCAGCGTACGCACACTGCCCTTCGGAGGCAGGTTGGATTTGATGCGCTTGAGGTGCTTTTCCACACCTTCTTCCGCGCGGCAAATCCGCGCGTAAACCGAGAATTGGATCATCAGAAAGCCATCCCGTTTCAGAAAATTCCGGAAGCGTGTCGCATTGCCGCGCTCCTTTTTTGTCGTGACCGGCAGATCGAAGAACACCATAAGCCACATGAACCGGATGTCCTTGTTCATTGGCGAGAGCAGACCGAGAGTTTGGGCAGGTCCAGCAAGTCTGCGGAGCCATGTTCCAGTGCCTGCACTAGGCTTTGCGCGGCGATCTCAGTGGCATTCAGGAGGCTCATTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTGGCTTCCCTACCGATTTCCCTGTGGTAGGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCGTGGCTTCCCTGCCGATTTCCCTGTGGTAGGCT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 3213591-3206906 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM011124.1 Pannonibacter phragmitetus strain H1-4 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 3213590 31 100.0 34 ............................... GGGAGAGGGTTACAGGCCCTCAAAAATACGGGCG 3213525 31 100.0 35 ............................... CAGATAATCGGTCCACTGGCCCTCGACGGCCGCGC 3213459 31 100.0 34 ............................... AGCTCAAACAGGATGTCGGCCTGTGTGCGCCCCC 3213394 31 100.0 35 ............................... ACGATCCATCCCCGCCTCCTCACGCCTTGGCCAGG 3213328 31 100.0 36 ............................... GGCGGTGTCGGCGATCAGCTGATCACCATTCCACCT 3213261 31 100.0 37 ............................... TGCATAGCATATACTCCAATTGGCGGCCGTCACCCAG 3213193 31 100.0 33 ............................... GAGCGTCACGACGCCGCGCGAGATCTGACCGAG 3213129 31 100.0 33 ............................... CTCGGCCCGGACGCGCAGCACGTGGCGCGAGAC 3213065 31 100.0 34 ............................... TGGGGCGCCGGGGCGCGGAGGCCTTGCAGCGCAT 3213000 31 100.0 34 ............................... GGCCTATGTGCTGCGGTTTGCGAACAGCCGCCGC 3212935 31 100.0 35 ............................... CAGGAATGCCGCATCATCGTCGGCGGGCTGGCACA 3212869 31 100.0 33 ............................... GCGGCCAAATGATTGCCCCAAAATGGTCGCCGC 3212805 31 100.0 35 ............................... CACCAGTAGCGTGGCTGTGTGCCGTGATGTCCATC 3212739 31 100.0 33 ............................... ACCTCTCGCGAGGAGGCCTATGGCTGGCGCGAG 3212675 31 100.0 33 ............................... GCCCAAGCGGCAGTGATGTCCGCGCCGGTGATG 3212611 31 100.0 35 ............................... CATACGTATTGTTTCGAAATGCCGAAACTGGGACG 3212545 31 100.0 34 ............................... CCCGCTCCCGGCGTTTGGGGTTTGCAAAACCGAG 3212480 31 100.0 33 ............................... ACAGTCTCGCCCAGCCAATCTATCGCTAAAGAG 3212416 31 100.0 34 ............................... AGTGCCGCACGCGGGGCTTTTGGCCTGCGGCGCG 3212351 31 100.0 36 ............................... ATGGCCCGCGAGGCCACGATTGGCGGGCTGCTGAGC 3212284 31 100.0 33 ............................... CAAGATTTTGGGGCGCTGATATGGTCGCGTGGG 3212220 31 100.0 33 ............................... CTGATTGACCTCTGTTTCCCCGGGCAGCAGGCC 3212156 31 100.0 34 ............................... CGTCACCATACTGACCCACAAATTCGGCCTTGTC 3212091 31 100.0 35 ............................... CTTTAGCGAGGATCACGCCAATGGCAATCATCATA 3212025 31 100.0 33 ............................... CTGCGCGTTGTCCGGCAGGGCCGCCTTGATCGC 3211961 31 100.0 35 ............................... TTTACCCGGACGGCCACTGTAGGCCAATGTCTGCC 3211895 31 100.0 34 ............................... TCCCGACGGGCCTCCTCGGCGGCCTCCCATACGG 3211830 31 100.0 34 ............................... TGCGTCGTCATCCGACCGATCCCGTTGACAGGCG 3211765 31 100.0 35 ............................... AATGTGTGGCCGCTTGACGGCAACGGTCAGCTCGT 3211699 31 100.0 33 ............................... CATGAGCGGCAAGCGGCAATGGGCGGGCGACCG 3211635 31 100.0 35 ............................... GCGATTGCCGCCGCCTTTTCCTCGGCGTCTTCGGC 3211569 31 100.0 34 ............................... GCGTTTTTCTTGGGCAGATACAGGCCGCCGGCGA 3211504 31 100.0 34 ............................... TTCTCGCCGTCTGCTTCCCGTGTCGTCGGCCATC 3211439 31 100.0 34 ............................... GGCGCCAATCCAGCGCGAATGACGATCGACTGAA 3211374 31 100.0 35 ............................... ACGCGCTCACGCCACATGGTCGGCCAGTTCCACGG 3211308 31 100.0 35 ............................... TCGGGCAGCCTCGGCTACCTCGATTTTGCGATGGG 3211242 31 100.0 35 ............................... TCGGGCAGCCTCGGCTACCTCGATTTTGCGATGGG 3211176 31 100.0 35 ............................... TCGGGCAGCCTCGGCTACCTCGATTTTGCGATGGG 3211110 31 100.0 35 ............................... CCTCCAAGCTCTCGCATCTGCGCTGGAGCCCGAGT 3211044 31 100.0 35 ............................... CTGATCACCCGCAGATGATAGGTCGCGTTGGGCTG 3210978 31 100.0 34 ............................... CTCGACGTGACAGCGGCCCGCGAACATGCGGCAC 3210913 31 100.0 36 ............................... GATCTGTAGGGTGCTCGCGCTGCTGTATTGTGCCGG 3210846 31 100.0 36 ............................... CATGACCTGATAACGACCCAAAGCGCGACCGAGCTT 3210779 31 100.0 33 ............................... GTAGAGGCAGGGACCATGACGGCATGGTATCTG 3210715 31 100.0 34 ............................... CCTCTGAGTAAATTGGTTTAAGGGGCTGGATCAG 3210650 31 100.0 34 ............................... GCTGCGGCCGTCATCACGTCGGTCATGATCGCAC 3210585 31 96.8 34 .............................C. CCCCCCGAGGAGGGACATGGACGTCCAACCTATG 3210520 31 100.0 34 ............................... GGGAAAAGAATTAACCACAGGCATCTGCCGCATC 3210455 31 100.0 35 ............................... CGCAATCATCCGCCAGCGTCCATTTTCCCTTGCAA 3210389 31 100.0 34 ............................... TTCGGGTAAACCCAAGTCTCTATGCCCGAAATCC 3210324 31 100.0 34 ............................... GCGTCAGGCCTGCCCTGGGGCTGGATCGCGGCAG 3210259 31 100.0 34 ............................... AGGGGACCGGACCATGCCGGATTGACTGACCCAG 3210194 31 100.0 33 ............................... CCCGCGCGGTCAAACCAACCCCCAGCGCCACCC 3210130 31 100.0 34 ............................... CAGCACCTGGCGTGGCTCTATGTTGTCAACCGGC 3210065 31 100.0 34 ............................... CATGCGGCCAGCGCGTAGTGGGCTGCGGCCTGCT 3210000 31 100.0 35 ............................... CGGCAGCCAGACCAAAACGGCGGCCACGAATGCGA 3209934 31 100.0 37 ............................... ACGAACAGCGTGCAGGCTGTGCTTGGCGGCACGCAGG 3209866 31 100.0 33 ............................... TTCCTTGAACGCCTTGGTGCGCTCGTCAGCGTT 3209802 31 100.0 33 ............................... CGCACTGATTGGACGTTGCGCGCGGCCATGCGG 3209738 31 100.0 36 ............................... CCACGTGCGCAACGCGCTAGCAGTGCGAACATGCGC 3209671 31 100.0 35 ............................... CGGCAGCCAGACCAAAACGGCGGCCACGAATGCGA 3209605 31 100.0 35 ............................... CGCCTCAAGCCCTCGATCCAGGCATCCCGCCGCGC 3209539 31 100.0 34 ............................... AGCATGCCCGGTGTGTTGTGTGACGGGATCAGCG 3209474 31 100.0 34 ............................... GGAGAGATCGCAAAACGCTTTCCACCCGGCCGTC 3209409 31 100.0 34 ............................... GCCCTGCCAGACGCCATCAATGACGTAATCCGGC 3209344 31 100.0 34 ............................... CGCAGCCTTTACCATTTCATCTGTGGTCTGCATG 3209279 31 100.0 33 ............................... CCGACCTGTTGGACACGCCGGCCGCGCTGAGGT 3209215 31 100.0 34 ............................... CAGCCGGTCAATCCAGCGCGGCCGCAACATATCC 3209150 31 100.0 35 ............................... CGTGGTTGCGCTGCCGGGCGTCCCGGCAACGGAAA 3209084 31 100.0 35 ............................... CGCGCTGCCTTGGCCTCATTGCCGAGTTTTACACA 3209018 31 100.0 35 ............................... CGGGCCACCAATCGCTCTCTCAACATCCCGCACCG 3208952 31 100.0 33 ............................... TGTCAAATTGTTCCTAACCGGCCTGCTAGACCC 3208888 31 100.0 35 ............................... CGCACTGATTGGACGTTGCGCGCGGCCATGCGGAC 3208822 31 100.0 34 ............................... AACATCAAGGTGCGCAACGCTGATTTGCTCAAGC 3208757 31 100.0 33 ............................... TTCCTTGAACGCCTTGGTGCGCTCGTCAGCGTT 3208693 31 96.8 33 ....T.......................... CGCACTGATTGGACGTTGCGCGCGGCCATGCGG 3208629 31 100.0 36 ............................... CCACGTGCGCAACGCGCTAGCAGTGCGAACATGCGC 3208562 31 100.0 35 ............................... CGGCAGCCAGACCAAAACGGCGGCCACGAATGCGA 3208496 31 100.0 35 ............................... CGCCTCAAGCCCTCGATCCAGGCATCCCGCCGCGC 3208430 31 100.0 34 ............................... AGCATGCCCGGTGTGTTGTGTGACGGGATCAGCG 3208365 31 100.0 34 ............................... GGAGAGATCGCAAAACGCTTTCCACCCGGCCGTC 3208300 31 100.0 34 ............................... CGCAGCCTTTACCATTTCATCTGTGGTCTGCATG 3208235 31 100.0 34 ............................... AGCATCAGCCGGCCAATTGATTGCCGCGCATCGA 3208170 31 100.0 34 ............................... CGTGCAGGCGGCTCTGGAGGCGCTCGGAAGCAAA 3208105 31 100.0 35 ............................... CTCCGCTACCGCCGTCACTCTCTGCCTGTCGGTAT 3208039 31 100.0 35 ............................... AGCTTTTGCATCCGCGTTGCTGATATACTGGAGCC 3207973 31 100.0 34 ............................... TACATCCACACAAGTGGCAACCGGCCGCAGGAGC 3207908 31 100.0 34 ............................... CCAATGGGCGGGATCATAGAACCGCCAGTCACCG 3207843 31 100.0 34 ............................... GATGAGGATCGCCAGCGCATTTGGGCTGTCGAGG 3207778 31 100.0 33 ............................... ACATCAAACTGCTCGATCCGCGTGCTGGTTTTG 3207714 31 100.0 36 ............................... TTGAGCAGGTTACCAAACCGTTGTTCCGGCGTGCCG 3207647 31 100.0 33 ............................... TCCTCATCGAAAACGTAGTGCCGCACCTCCCGT 3207583 31 100.0 33 ............................... CTGCGCTGCAGCCTGAGCTTGGGCGCGCTGCTG 3207519 31 100.0 34 ............................... CCTAACTACTTCGCCAGAGAACTTCAGCCCGCAA 3207454 31 100.0 34 ............................... TTGCCCAGATCATAGAGCCGGGCGTGGCGCTCAT 3207389 31 100.0 32 ............................... AGGTCGGCCATGTCCTTTGCCGCCATCACCTC 3207326 31 100.0 34 ............................... TTCCTTTCGAGCGCCGATCTCCCCGGCGCCGGGT 3207261 31 100.0 33 ............................... AGTTCCGCGTTGTGTATAGCGGGAGGGAGAAGG 3207197 31 100.0 34 ............................... ATCTGCACCGCCGAGTGCCTCGCCGCCGAGGGCG 3207132 31 100.0 35 ............................... TGTATTATGTCGTTGACCGGCTGCCGAGGTTCCAG 3207066 31 100.0 34 ............................... CCGGCTCGAGTGGTTTCCGGGCCGGGTGGATTGG 3207001 31 100.0 34 ............................... CTTCGCTGAAGTGGGGGTACCGGGAAGCCAATCG 3206936 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 103 31 99.9 34 GTCGCCCCCTCACAGGGGCGCGGATCGAAAC # Left flank : GTCCCGGCGGGGCAGGGCGCCTGCGCCGCGTTGCCAAGGCCTGCCGCGACTATGGCCAGCGGGTCCAATATTCGGTTTTCGAGATCGAGGTGGACCCGGCACAATGGACCATGCTGAAAGCCCGGCTGGAAGGTATCGTCGATCTGGAAACGGACAGCCTGCGCTATTACTATCTGGGGGCGAACTGGCAGCGCCGGGTGGAACACGTGGGTGCCAAACCCGCCGCTGACCTCAACGGCCCGCTGATCATCTAGGGCAGTTCTTTGCACCTGCGCACGTGGCCCGGTGCGGCGCAGCAGGCTTTTGTGCCGGGCGCGAACCTGAAGTGTGACCCGTTTCCCCGGCAGGTTCGCGTTCCACCCCGCTCTTTGACATTGCTGTCTTTTCTGCCGCGCTCTGTGCCGCGCTGCCTTCACTTTTGATCCTTGTCCACCCTTTGCCCGCAGGATCGCGCTGCGGGGCAGAATTGCATTTTGCGGCCAAACTGTTAGGACTAAACA # Right flank : GGCCTCAGCGCAAAGACCGGGCGCGGACCCGCCGGTCGCCCCCTCACAGGGGGGATCTTTTATCCTCGCACTGATCCGAACGCTAGATCAGGACCAGATACCGGGCCTCCAGCGAGTCCAGATGCTCTGACAGCCATAACGGAGCTGTCTGGCGCCAGAAGGTCCAGAGCTCCGGGTAACTCATTGCCGCAAAGCCTGGGCTCGATCCTTGAACCCGTTCTGCAAATCTTGCGGTTTCAGCGCGGTGGGCTGCAAAGACCGGGCTGGTGGCGGGGTTGGCAGGTTCCCAGAACAGGTAGAGGAGTGTTACGGGTCTGCCGCTGTATGTATGTTCCAGACCAAAGGCATGTTTGATCAACTGGGCAGCGTCAAGCCAGAGGTAATGATCAGGCTCTTCCTGGAGGCGTTGCATTTCCTGGAAATATCCGTTCTGCCGCCGTGTATCCCGGATCTGCTCAGCGTAGGCTGGTGAGAAACTTGCACGGTGCTTGCCAAGATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACAGGGGCGCGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCTCGCGGGGGCGCGGATCGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //