Array 1 139707-139006 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCNZ010000003.1 Escherichia coli strain PE01_660 .PE01_660.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 139706 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 139645 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 139584 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 139523 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 139462 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 139401 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 139340 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 139279 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 139218 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 139156 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 139095 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 139034 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 157067-155208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCNZ010000003.1 Escherichia coli strain PE01_660 .PE01_660.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 157066 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 157005 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 156944 29 96.6 32 .G........................... TAAACGCACCTGGCGCGCCACTTTATCAACAA 156883 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 156822 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 156761 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 156700 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 156639 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 156578 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 156517 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 156456 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 156395 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 156334 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 156273 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 156212 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 156151 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 156090 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 156029 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 155968 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 155907 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 155846 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 155785 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 155724 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 155663 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 155602 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 155541 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 155480 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 155419 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 155358 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 155297 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 155236 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //