Array 1 299948-299550 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNJR01000002.1 Actinopolyspora xinjiangensis strain DSM 46732, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 299947 30 86.7 31 ...........T..T.............TA CTTCCCTTGTTTTTTTGAATATGTTGATCCG 299886 30 93.3 31 ..............T..............A ACCCGCGATCGGTGGAGCCGTTGCTGTTGTG 299825 30 93.3 31 ...........T..T............... CTGGGTGGGAGAGAAGTCCGGCGGGGCGCTG 299764 30 100.0 31 .............................. TCTACGCGCTAGCGGTATCGCTTGCACCGAA 299703 30 100.0 31 .............................. CCACGTCGTAGACCGAGACACGGTCGGAGGC 299642 30 96.7 31 ............................G. GCAGAGGCAAGGATTCCATTCCTTGCGATCT 299581 30 80.0 0 ...........A...A...A.......GGC | A,C [299555,299558] ========== ====== ====== ====== ============================== =============================== ================== 7 30 92.9 31 GTAGGCCCCGCGCACGCGGGGATGGACCCG # Left flank : GTCGGTGCTCTACCGCCGCGACCTGCGACACGCCCACACCGACGACGAACTCGACGCGCTGGTCCGCGAGATCACCGAGAATCCACCCCGCCCGGTCTGTGAAGTGTTCGTGTGGGACCGACCGTGCCGGTTCGTCCTCGACGGTGAACCGGAATTCCCGGACGCTCGGCTGCTCGTGTCCAGCTCCCCGAACACCGGTTGGGGCGCGCTGAACTACGTAGATCCCCACACTCCACACGGACGTGTGGTCGATTCTTACAACCCCGATGCCGAAGCGAATGCGCCGATCCTGCCCCTCGACCCGGACGGAGCGGACTTCCCCAACTCGGCCGCACTGCCCCTCGAGCAAGTCCGCGAAGCCATCACCGAGTACTGCCGGACCGGACAACGCCCCACCCGCGTCGAATGGCAACCCGGCCAGTGGTACTGACCACCCTCCTACCCGGAACAAAAGTGATTCCCACAGCGGGAAAGCACTGTTAAGATCGCAGGCCAACAAG # Right flank : GAAAGCGCCTCCGGATCGCTCCGGAGGCGCCACCTCATCCGTCCGGTTCGGACGAAACGGCAGCTCCCCAGCACGTTGTGGAAACCACCCACCGCCGACCGCTGGTGATGCGGCGCCCGTTGGTGGTGCGGTCCCAGTGGCGCACCCCCAGGAGCGCGCACAGCGGCACCGCACGAAACCCATCATCCAGCTCGACGAACTGCCGCACCGAGCGACCAGGACGGCATTGCCGCGGCGCTACTCCTTTTCCTTCTCCTTCCACTGTTTCCGGACGATCAGCGCGAGACAAGCGAACACGACCACTTGAACGAGCCCCAGCGCCGAACCGGACGGGAAGTACTTCCACAGGACGAAATGATCTGCCAGCAGAAGCAGCACGAAGGCCGCCATCCCCGCGAGAGCGATCACGAGATGAAGAGCGTGTCTTTTCCCCACTCGAAAAACGTAGTCCGCCGCGAACGAGCCGATCAAGGAATCGTGACGGCCCGAACCGCGTCTCG # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : GTAGGCCCCGCTCATGCGGGGATGGACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 83206-82993 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNJR01000011.1 Actinopolyspora xinjiangensis strain DSM 46732, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 83205 30 100.0 31 .............................. CCTTCGGGCGCGGCCCGGTTTCACCGCGTTC 83144 30 100.0 31 .............................. TCGCCGACCGGCGGGTGGTGACGTATCCGGC 83083 30 93.3 31 ............................CA ACGCGACGCTGGAGACCACCCACCGGCGGTG 83022 30 90.0 0 .......................T.G.T.. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 95.8 31 GTAGGCCCCGCGCACGCGGGGATGGACCGT # Left flank : TCATCTGGCCACCGTTCCCACCGAACGCGAGCACAAGAACGCGGCGGAAGTCGCCGAACGGCTCGAACGAGTCGGCGCGCACCACGCGGTGCGGCGATGGGAGAACGCAGGACGCTGGGAAACCGTGCACGGGGATCTGCACTGGACGAACCTGCTTTGTCCGGAGTTCGGGCTGCTCGACTGGACACTGTGGGGACGCGGACCAGTGGGCACCGACGCGGCCACGCTGTACTGCTACAGCCTGCTCGCGCCGCGAACGGCCGAGACAGTGTGGCGAACCTTCGCCGACGTGCTGGAAACCCCGAACGGCGAGATCGCGCTGCTGCACGTGGCGGCTCGGTTGCTGCGCCGAGTCGAGATCGGTGATCACCCCGAGCTGGCGGCACCGCTCAGGGAACTGGTCCGGCGAATCCGATCCCGTTACCGTTCGACTGAAGCAGACTCGTGACGGAGTGGTGTTCACAGCGTCTTCGCCGCGCTAGAATCCCAGCGCAGTGAGT # Right flank : CCGGGTGTGGTGGCTACGAGGGCGCCTCAGCGCCGGACAGAACGAGCGGGAGTGGCACGAAAAAGCGCCTCCGGAACGCATCCGGAGGCGCTGGATTTCACACGCGGAATCAGTCGAACTTCTCGGCCTTCACCGCACCGATGAACGCCGCCCACTGAGCGCCGGTCGTGGTGAAGTACCCGGCCGAACGATCCTTCGTGTCACGCACCGCCGCGCCGTCCGCGATACGGCCGACCTCGACACAGCTCGTACGTTGTCCTGAGCGACTAGACTTCCGCCATCCTTGGGGGTGTATCGTCAATGTCGTTCTCCTTTTCGTCTGCACAGTTGGCGATGAACTCTGCCGACGCCTCGGGGCTCATCGCCACTTCGTGCAGGTTAGTAACCGCATCCTGATACGCCTTTGCGGTACCCGGGTTGTGCAGGGACACCGACGAGTGGTACTGCTCCATGTGCACGATCGGCGTAGCTTTCGGGAACTCGAACAGGATGAACGAGCC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCACGCGGGGATGGACCGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 90986-90774 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNJR01000011.1 Actinopolyspora xinjiangensis strain DSM 46732, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90985 29 65.5 32 ACGAAT..GC.A.G............... ACTCCTCATCAATCCCATCCCCTGCCGACCCA 90924 29 93.1 32 ..............T.............C AACACCATCGCCATCGGAGGCAGCGAACCCTC 90863 29 100.0 32 ............................. TGCGGATGCTCCCGCGGCGTATCGCGGTAGAC 90802 29 93.1 0 ........................A.T.. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 87.9 32 GTAGGCCCCGCGCACGCGGGGATGGACCG # Left flank : GCTGATCGTGCTGTGCCCGGTCATTGGGAAGGCGATCTGCTCATTGGGCGCAATAACGCGACCGCGATCATTACCTTGGTTGAGCGCACCACGCGCTATGTGACATTGGTGGCTTTGCCGTGGGGACAAACGCCCCAGCATGTCAACACGGCGTTGCGGCGCAGTCTAGCCCGCGTTCCTCGTCATCTCACCCGGACGTTGACCTGGGATCAGGGCAGCGAGCTGGCCTACCACGAGGAGTTCACTGCTCGTACCGGCATCCCGGTGTTTTTCTGCGATGCGGCCAGCCCGTGGCAACGCGGCAGCAACGAAAACACCAACCGGCTGCTGCGCCAATACTTCCCGAAAGGCACCGACCCTCCCCGGCAGCAAACCCAGCTCACCGACATCGCTCGCGAACTCAACACCCGACCCCGCAAAACCCTCAACTGGGACACCCCCAAACACCGATGGACTACACTACTGACCAGCAAATAACCAACCACCGTTGCAACGACCCC # Right flank : AAGGAACGCCCCCACACGGCAGGCATCGAAGAGCCCCGAGCAGAAAGCTCGCTCATGAGTCGAGACATCCGGCGAAGCCCTCGCGCTGCGGCAAGCCAGAAGGCATCCTCGGAAAACGACGCGAATCACCGAACGAGCACGCGGCCGGTTCGTAGCTCACCATGAGCGCGTTGGAGGAAATCGGGCGGTCACTGGCGATCACCACCACGAAAGCCACCGAAGCCCAGGAAGCGATCGTCGCGGCCGGAAGCACCTGGAACCAACGAGGACAGGAACTCACCGAACGCCTGTCCGGCACCAACGACCCGAACGCCCAACACCTCCTGAACCAGCACGAGACCACCGCCGAAGACATGCGGCAAGCTTGGCGCAAGATCACGCTGGCCCTCCGCACCATCCAGCGCTACCGCACCAGCATCGAAGGGGAACCGGCTCCGCTGGAGACACCCCGATCGGAGGCGGGTTCCGTACGGACATCCGAGCCGGTCAAGAGCCCGCAC # Questionable array : NO Score: 3.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 226907-227118 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNJR01000001.1 Actinopolyspora xinjiangensis strain DSM 46732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 226907 29 100.0 32 ............................. CTGCTGACGAGCATCATCGACGAGACCGGGGA 226968 29 96.6 32 ..........T.................. CTGAAATCCGTGACGATGGGGCACACGCATCG 227029 29 100.0 32 ............................. TCGATGTGCCCACCAGGGATCGCCCAGTGCCC 227090 29 86.2 0 .........G.A.C.......A....... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTGCTCTCCACGCTCGTGGAGGTGGTCCG # Left flank : AACTCCCCGGCCGCTATCCGCTCCCGGAACTCAGCGGCCAACCGCTCGTACGCGGTCGTGGCATCACCCGGAGATGCGGGCTCCCCTACGACTCGGCGACCATGACCGGGCAGCACCTCGACAAGCCCGGACTCTTCGAGTACATCGAGCGCGGAGCGAACCGTGTTCCGAGCCACCGAGTGCTCGCCTGCCAGACTCGACTCCGACGGCAGCAGGGTGCCAGGAGCGTAGTGCCCTGCCTTGATCTGCCGCTCCAGCTCAGAAGCGATCACACGGTACGTTCCACGGTCAGCCACGCTCGCCCCTTACTGCGGCCCCTATGCTTCCGCGACAGGAATTTCCTTCCATGCATGCATGCATGACAACCAGTATTGCGCACATATGCCAAGAGCGTGCTTACGGAGGAACCAAGCCATCTAGCAGCGTCGTCTTGCCCCTTCGTGTATTGTCAATGCCTCCAAAACGTGCAGAAGGCTTTCCAAAACTCCTGCTCGCAGAGG # Right flank : GCTACCGCCCAATGGTTCTCTGATGAGCTCCCGAGGGGAGTCCTATCTTCCGTAGTGCGTACGACGCTTCGAGTCACCTACGTCAAACACACCCGTGCGGACAATGCGTGGACACAGCACTTCTGCTCGCTCTCCGGAATGGCAGTTTCTCCAGCACAACAGGCATTCGATTCAAGACAGCGAAGCCCGCTCCTAAAGCGGGTGTCGCAGGTTCGAATCCTGCCGAGGGCGCCCCTCACCAGCCCCGGAAAAGGCCCTGTGAGCTGCACGGACAGCCCACAGAGCTATTTCACGGTTACCTGGTTGTACCCAACTCAGCTCAGGTTTCTACGACGCTCCACGTACAGTGTGCGTACACGGCTCACGTGCGTTGCCCACCCAGGGCGGATTCGACCTGAGCTCGGGCGCGAACCTCCTCACCGTCCAGGCAGGCCGCGTACACGTCCAGCAGCACCGCCACGGAGTGTCCGGCCCACTTCGCGACGGTGGTCGGGGCCACT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCTCGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 394890-394678 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNJR01000001.1 Actinopolyspora xinjiangensis strain DSM 46732, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 394889 28 100.0 33 ............................ GGTGAAACGTTGTTTACGCTACTCCGACTAGCC 394828 28 100.0 33 ............................ TGCCATCAGCCAGCCGATCTGCTTGACGTATTT 394767 28 100.0 33 ............................ CGTGCTGTCCGGTGCAGGCGGTGGTGTGATCCG 394706 28 100.0 0 ............................ | T [394680] ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTAGGCCCCGCGCATGCGGGGATGGACC # Left flank : CGTTCCGGAGGGCACGACGATGGAGCTGCACGCGCTGCTGTCGTGCGTTCGGGAGATCGTGCTCACCGAGGAGACGGTCCAGCCGTGGCGGGACGTGGTCGGCCTCGCCGAGCAGGTGGACACGTCCAGCGCCGCCGGGGTGCTGGGACTGATGGGGGCGATCGAGGAAGCGTCGATGACGCCGCTGCCGCCGCGGGGGTGGTTGCGGGTGGATCTGGCGCGGACCGACTTCGCTCGCGCTGTGAACCGGGCGGTCGAGCCGGTGGAGGCGGCCTGACCGGTCACCGTGATCCGCTGCTGAGGTGTTCCCCGGAAAGCGATCCGACGGATCGAGTCCCGCCGTCAACCAGGGCTCGGGATGTTTCCCGGGAGACGCCGACGGGGGGAGGGGTCGGTGCGGAGTTGCCGGTCACTCGTCACGGGACGGTCGGGGAGCGCTACTGCCGGAGCGAAAGTGATTCCCACAGCGGGAAAGCGCTGTTAAGATCGCAGGTCAACAA # Right flank : CAGCGGAGTCTGTCCCACATCCGCCACACACAACGACCACAGTGGACAGGCCCCTGCGGCGCGAAAACGCCCTCGGTGCGTCGGGGGGGGGGGGGGGGCTGCTTCGGCGGCTTACTCGAACCGCTCGTTCTTCACGGCGTCGATGAACGCGGCCCGCTGCCGGCCGGTGGTGCTGAAGTACCCGCCCGTGCGTTCCTTGGTGTCGCGGACGGCGGCGCCATCGGCCACGCGGCCGATCTCGACGCGGTTGGTTTCCTGGCTGGTGTAGGCGGACACGGAAGCGGAAGCCGGAGCCCCAACATCTCGTCACCTGATCGCGTTCCCGCTATCCTCGGTGCGTACCTCTTCGCGGAGGGTTGCCCCCGGTCGACGGGCCGGGGATTCGCGAAGGGGGCTACTTCCGCGAAGAGGGTGGTCGGTGTGGCCGATGAGCTCGCAGACAAAACGATCGGGGAACGGATTCAGATCCTCCGGGAGCGGCAAGGCAAGTCGCGCCCGGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCATGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 31664-30298 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNJR01000021.1 Actinopolyspora xinjiangensis strain DSM 46732, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 31663 37 100.0 35 ..................................... TGAAACCCCCGAGAAGGGTTCGCGGAGGGGGTCGC 31591 37 100.0 38 ..................................... GCCGGGCGTGCGGCTGGCGCCGGTCCCGGCGCCGGCGG 31516 37 100.0 37 ..................................... GACCCGTTCGCGGCGTGGCTGGCGTGGTACCTCGACA 31442 37 100.0 38 ..................................... AGCTGCTGCGTCTCAGCTGCCGCCCCCGCCATCTGGGT 31367 37 100.0 35 ..................................... GACCAGGACGCTGCCGAGCAGCTGAAAATCCAGGC 31295 37 100.0 38 ..................................... GCCCGGCCGGGCAGCACGAGCTGGCCCCGACGGGGGCT 31220 37 100.0 36 ..................................... GGCTTTGTGTCGGATGGGGGAGGGATCTGGTTGGAT 31147 37 100.0 36 ..................................... CCCGAGGGGACCGGGGATGTCGACCGTGCGATCGGT 31074 37 100.0 36 ..................................... CGCTGAGAACTCCTCCGGTGGTGTAAGGCATGTAGC 31001 37 100.0 37 ..................................... TTGAGCTGGTCGGACAGCACGATCAGCAGGCGGGACA 30927 37 100.0 36 ..................................... GGGCACTGGAAACGCCCCGAGACAGTAAAACACCCG 30854 37 100.0 36 ..................................... TGGGACTGGTGGGTTTTGTGCAGCCCGTAGGCGGCC 30781 37 100.0 37 ..................................... GGTGCCGTCGTCCGAACCGGCCGGGTTGGTGTAGGGC 30707 37 100.0 37 ..................................... TGCCTGCCCCGCTGTCGGTGCGTAGTGCCGTGGCGGC 30633 37 97.3 37 ......................A.............. GTGTGCCGTTCGGGTGCCTGGGTGCCGTCCTGGTGTG 30559 37 100.0 37 ..................................... GACCACCGGAAAGTGCTGCCGATCATCTCGGCGAATC 30485 37 100.0 37 ..................................... CACAACATCGACCTGTCCAACGTCGAGGCTGACGCCA 30411 37 94.6 36 ..............C.............A........ ACCGCCGAGGCCACCGCCTCATGGTCCGAGGATGCT 30338 37 83.8 0 ...................A......CCAC.....C. | TG,T,A [30302,30306,30318] ========== ====== ====== ====== ===================================== ====================================== ================== 19 37 98.7 37 GTGGCGCCAGCCCTTCGGGGCTGGCGAGGATCGCAAC # Left flank : CGCTACCTGCGCGGGGACCAACCGAGCTACACCCCGTGGATTGCGAGCTGACCGTGGAGCTGTTGATCACCTACGACGTGGACACCACCACCCCGGAGGGACGTCGCCGGCTCAGGCACGTGGCCAAGGCGTGTGAGGCATACGGGATCCGCGTGCAGAAGTCCGTGTTCGAGGTCGTCTGCCGCCGTTCCGACTGGATGTACATGAAGCAACGACTCAACGAGATCATCGACCCGACCGAGGACAGCATCCGGATCTACGCTCTCGACCGGGGGAGCTTCGCGGCGGCCGAGCACATGGGGCAATCGCCGCCCGCTCCGCACGACACGCCGCTGGTGTTCTGAGCTTCCGGCAAGAACATGATCGAGTGTCGATGTACGGCTTCGGAGGTGCAAGCGTGTCTCGACACGCCGCGAGGTTCCCAAGCACCTGCTCGGCGTGTCGGTCACGGGACAGTCACAACGGCGAGGTGGCTACCCTGGAAACCCTGCTCAATCGCC # Right flank : TCGGCTGCAGGAACTCGGTGACTGCCGTGTTCCAGTCGAAGGTGGCCAGGCCGTCGGTGCCGCGGCTGGTGAGGGCGTCCGGGTCGAGCAGTCGGATGCCGGCCTCGGCCAGCAGACGAACGTTGGCGGGGTAGGCGGGGTGTTGGCGCAGCACGGGTTTCACGCAGGGAGCAGCGGTGGTGGGCACACCGCTGACCAGCAGCTCGTTGACCAGGCTGACCGCCAAGGTGTCGCTGATACCGGCCGCGACCTTGTTGAGGCTGTTGAACGTCACCGGCGCGGCCAGCACGGCATCGGCCTGGGGCAACGGATCTCGCTCACTCGGCAGCCGGGGCCGCACACGAACAGGGTGACCGGTCCGCTCGGCCACCGCATCGACGTCGACCCAGCTCGCGGCGGTGGGGCTCAGCACCACGCACACCTCCCACCCCGCCTCGTGCAACAGCCCGACCGGTTCGGCCAGCTCCCGCACCGGCGGCGCCGCCGTGCCGATCAGATAC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCAGCCCTTCGGGGCTGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.40,-18.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 40443-40625 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNJR01000021.1 Actinopolyspora xinjiangensis strain DSM 46732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 40443 37 97.3 35 ..............C...................... CCCCTGGCCCTGCACACCGGACTCACCAGCGGTGA 40515 37 100.0 37 ..................................... AGACATGTCTGACGTGACCGCCGACCACATCGAGGCG 40589 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 98.2 36 GTGGCGCCAGCCCTTCGGGGCTGGCGAGGATCGCAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : CTACGGGCAATTGCTGTCCGAGACGTACGAGCGGTACGGGTGGCGCCACCCCTCCGGACTGGCGCCCTTCCCCCTTCCGCCTCGTTCACGGCGTCATGGTGACGAATGTGGTGAGGTGTTGGTCGTCGGTGTCGTACACGCCGAGTTCGTAGTCGAGGATGTCGGCTTCGCTGCGGCCGTCGTGGCGGACGGAGGCGGCCAGTAGATGCTTGAGGTGGTCGGGCTTGTCGGGATCGGCTTCGGCGGTGAAGGTGCGGACGACTTCGCCGAGGCGGCGGACTTCGAAGCGCAGCAGCCGTGGTCCATCGGGAGTTGGCGACGAGTCCGTTTCGGACGGTTCGATCTCCGGCGCTTCCGGCAGCGCTCGTTCCTTCGCCTCCGCGGCCACGAGCTCGGCCGCTCCGGCGACGACTGTGGTGGGTCTGCCGCGTGCTGCTTCGACCAGCCCCCAGGTCTTGAGCAGTGTGACGGCCCTGTTGGCGGTTCCCACGGATACGTGG # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCAGCCCTTCGGGGCTGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.60,-17.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 68533-68322 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNJR01000014.1 Actinopolyspora xinjiangensis strain DSM 46732, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 68532 28 96.4 33 .......................G.... CTCGCGCCGGGTGACGGCAAGTCGGTGCTCGGT 68471 28 100.0 33 ............................ TCGTCAGCAGCGGTGTCCGTTTCAGCGTCCGAA 68410 28 100.0 33 ............................ GTCGCATACGGTGTGGTACAGCCACGCGGTGCG 68349 28 82.1 0 .....................T.TCT.A | ========== ====== ====== ====== ============================ ================================= ================== 4 28 94.6 33 GTAGGCCCCGCACGCGCGGGGATAGACC # Left flank : GCGAGTGCCGATGCGCTGAACTCGGTGATGAGGCAGGGCTCGTGAAAGTTGGCGACAAATCGGCGACCACCCCGCGACACCAAAAAGCCCCAGGCCGTTGACCTGGGGCCTTGAGCGCGCCCGTAAGGATTCGGACCCCAAACCTTCTGATCCGTAGAGAGATCACAGGTATACCAACGCGCTCTGTTGAGTACCGTTGACGCTGGTCACGGCTTATTTTCTGTCCATCCGACCGCGTCTCGAACCATCGAGGAACGCGCTGTACGCGACCACCGTGCGGTCACGTCGTCTCCCCGTGAAAACGGCCCCGGACGCGGTGACTCCACCACCGGCCGGGCCTTGATCAGACACCGGAGGTCCGCCCCACGAGCGACGACAGCTACCCGACTCGGTGCGACAATGGGGCATTGTGGATGCCGGTGGCGCCTACTAAGATCCACGTCGCCACCACTGATGGTCACAATCGAATAACGACACTGCGGAACCGCAGGACAAAAAGG # Right flank : TCGATCTGTTGCGAGGCTGCGGCTCGCTCGCCACGAACGGCCGCCAGGGCAGGCCGTCGGCGAGTAGCTCCCGCAGTCTCGTCACCTGATCGCGTTCCCGCTATCCTCGGTGCGTACCTCTTCGCGGAGGTTTTACCCCGGTCGACGGGCCGGAGTTTCGGAGAAGAACCCCCATATGGTCGACGAGTCACCGGACGATGAGTCCCAACCTCCGGTGATCACGATTAACTCCGGACAGTCTGCTGGGTAGCCTTGCTCACGTGGAGTCGGATATCGGTCGCAAGCTGCGTCAGATCCGGCACGCGCGCGGCAAGTCCTTGTCCGTGGTCGCCGGATTAACGGGTATCAGCGCTAGTTATTTGTCTCGACTGGAGTCCGGTGAACGTGCCCTCGACCGCCGGTCTCTGATCACTGCTCTTGCCGAAGCTCTGGAAGTCGCCCCCACTGAACTCACCGAGTTCACACTCGGCGGCGCGGGTGAGACGAACGAGGATGGGCAG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCACGCGCGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 51340-49842 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNJR01000020.1 Actinopolyspora xinjiangensis strain DSM 46732, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 51339 28 100.0 35 ............................ AGGGTGTACGGGCACGTGGCCACGTGGGGCACCGA 51276 28 100.0 33 ............................ GAAGCACAGATGACCACCGAGTGACCGAAGGAG 51215 28 100.0 33 ............................ CTGACCGCCACCAGCCACTACGACAAGCACCAC 51154 28 100.0 33 ............................ ACTGATTCCAGTTTCCGTGATCAAGTGACCGTC 51093 28 100.0 35 ............................ AGGGTGTACGGGCACGTGGCCACGTGGGGCACCGA 51030 28 100.0 33 ............................ ACACCCCCCGCGTCGGGAGACGGCCGGGGGTGT 50969 28 100.0 33 ............................ GTTGGAAAAGCTGGTCAACTCGAATTTCCAGAA 50908 28 100.0 33 ............................ CTACGACATCCTCGGCGGCGGCCCGTGCCCCCA 50847 28 100.0 33 ............................ AGCCGCCCAGTACGCACAGAAAACGATGAACGT 50786 28 100.0 33 ............................ GGCCACCCCGAATGACCGCCCCACCAGCCACCA 50725 28 100.0 33 ............................ CAGGAGTCGTCCGCCGCCGCGCACTACGACAAC 50664 28 100.0 34 ............................ GTCCTGGCCCCACGTCGACACGATCGCGTTGGAG 50602 28 100.0 34 ............................ TCGCCGGTGACGATGCGGACGAGTCCAGGGCTGA 50540 28 100.0 33 ............................ CCGGCGTGGACGTGCCCGCCGGGGCGCTGCGAC 50479 28 100.0 33 ............................ GGCCACGTAGCTGGGTGCCCAGCCAGTTGTGAT 50418 28 100.0 33 ............................ GTTGGAGTTTTCAAGTGGGCAACCTGTCCAGCA 50357 28 100.0 33 ............................ CACCCGGCGGCCTCGTAGACGGTGAACGCGCGG 50296 28 100.0 33 ............................ GGGCGACGAGGTCGAGACGGACGAGCAGCACGA 50235 28 100.0 33 ............................ GAGACCGGCGTGGACGTTCCCGCCGAGGCGCTG 50174 28 100.0 33 ............................ CGGCGGGCCGTACTACACGATGCACGGGCAGCT 50113 28 100.0 33 ............................ GACGCGGCAGGGCCGCCGGGCGGAGCGTGCTGC 50052 28 100.0 33 ............................ CGCCCGGTGGACCTGGAGAAGTTCGCCGTCGAC 49991 28 100.0 33 ............................ TGGGCCGCCTACGTGCGCTGGTACGACATGGCC 49930 28 100.0 33 ............................ GGTCAGCTCGACCGCCCAGTCCTGGTTCTCCAT 49869 28 75.0 0 .....................CAACTAG | ========== ====== ====== ====== ============================ =================================== ================== 25 28 99.0 33 GGTTTCCCCGCTCGCGCGGGGGTGAGCC # Left flank : CGTCCTCAACGGCGGCACCGCACCCCCGAAAGACACTCCCACCGGAGTGGTCGACCTGTGGGATCCAGACACCAACGTGCCCGCCGGGGTCAACTACGCCAGCCTGGACGAAAACAACGATGACCCGGAATTCTGATGAGCACCTTCGCCGTTATCACCACCAGCGCCGTCGCGGACGGCACTCGCGGAGCCCTGACCCGCTGGATGCTCGAACCTGCTCCAGGAGTCTACGTCGGCACGCTGACCAACCGTGTCCGGGAATACCTGTGGGAAGCCGTCTGCGAGAGCATCGACGACCAGGAAGGCTGGGCCGCACTCATCTGCAACGCCGACAACGAACAAGGCTACGACATCCACACCCACGGCCCCGGCACCAGAGGCCGAACGATCGTCGATCTCGACGGCCTCTCGCTCGTGTCCTGGACACTGACTCCTGACAGCGATCCCGAAGCTGAGATCACAAAACGGTAAAGCACAACTGTTTTCCCAGCACAAAAAGG # Right flank : ACTCATCGGGCACTGCAGCTAGCAGTTTCCCGTGGTGGGAAACCGCTCGAGGACGTGCCAGGTGTAGTGGTGATCGGCGCGGGTGAGTTCGACCAGGCGCAGTTCAGTGATGGTGACCTCGACAGGAGTCAGTTCCCGTGCCCGCCGCACAGCGCGAATGATCTCCTCCGGTGATTGCACCCGATTGCTGTAGGCAATACCCACATGGGGTCGGTACATCCGCAGCGGGTCGATGTCGGCATAGCCCGAGGCCGTCGACACCGCGCGATACACCCCAAGCAGCGGAGACCACGGAGCAACGCTGAACCGCACAGCCCCCGGAGAACCGGCCAACGGGATCAGTTTCAGACGAAACGGCTCGATCCCACGGCAGTGTTCCCCCACGTCCCTGGCCGCGGCCCGCAACGTCGGCACGGGCACCTCATCGACATAGCCCAGACGGCGCACGGTCAGGTGCAGACTCTCCGGCGGAACCAGATCGAGCCCCTCCGCGGGCAGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCCCCGCTCGCGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCATGCGCGGGGGTGAGCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.10,-12.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 61678-60508 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNJR01000020.1 Actinopolyspora xinjiangensis strain DSM 46732, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 61677 28 100.0 34 ............................ CTAGCCACACCTCATCCCACCCGCCGGGGGGAGA 61615 28 100.0 33 ............................ CAGGGCCGGGAACAACGGGGATGGGGCCGAAGT 61554 28 100.0 33 ............................ TGCGTTGCCCCACATCGCCGAACAACAGCCCGT 61493 28 100.0 33 ............................ CTCGGCGCACCACCTCGGAGGACGGCGGTAGGT 61432 28 100.0 33 ............................ CAGCTCGGTCACGACGAAACCGACCCATCCATC 61371 28 100.0 33 ............................ TCCCCGGACGTGGCACATCGCGTCCTCGCCTCC 61310 28 100.0 33 ............................ TTCGAGAACCTGTGCGCGCTCCTGGCCGACGGA 61249 28 100.0 33 ............................ GGCCAGGTCTTCGTGATCCCGTGAACTGGTGTT 61188 28 100.0 33 ............................ TCGACTCAGGAATCGTTAGGCTCTGAATCCCGA 61127 28 100.0 16 ............................ NNNNNNNNNNTCCCGA Deletion [61084] 61083 28 100.0 33 ............................ CCGCTATTCGCCACCGAACCCTGGCGATCCGGC 61022 28 100.0 32 ............................ TAAGGGCTGCCGCACTCGCGAGCGTGGCGTGT 60962 28 100.0 33 ............................ GGCTGGCGGCCCACTTCCGCTGACCGGCAGGCG 60901 28 100.0 33 ............................ GACCGTGCGCATCCAGCTCATCCCCTTGTACGG 60840 28 100.0 33 ............................ CGAAGGCGCGATCTACCGGTGGGACGGAAGCAA 60779 28 100.0 33 ............................ TGGTCCGAGCACGCGCTCGCGTACGCCCGTGAG 60718 28 100.0 33 ............................ CCCGCCTGAACGGCCTGCCAGATCGACGATCGA 60657 27 96.4 33 ......................-..... ACGTCTCGATCGGCTCCGTGTCCCTGTCCAACG 60597 28 100.0 33 ............................ GGGCGCGTTGTCGGATATGGACCAGCGGGGAAC 60536 28 100.0 0 ............................ | A [60510] ========== ====== ====== ====== ============================ ================================== ================== 20 28 99.8 32 GGTTTCCCCGCGCGAGCGGGGGTGAGCC # Left flank : CAGC # Right flank : GAAGACGCTCTGAGTCACCGATAAATGACAGGAAGCATCCGGCCTCTGACGGTGGTGGCACGCTGAGGTACCGCCACCGTCAGAGATCGCTTCCGCTCTTGTTAACCGTTGTCTACCCCCACTAGCGAGCAGAGTTCTGACCAGGTAATTCGGTCCATGATCAGGCCCTGCTGCGTGGTCGTGGGGAACTGCGACAAGACACCTCTCGTCAAACACTCAATCGGTGCACCCCCACCGGGTGGGGATTCCCCAAGGTTAGTCGAACAGGAAGCCAGTAAGTACCTCCGTCCCCTCAATGGGCGCATACCGTACTGCTTGTGGGGCAATAAGGAGACAATCCTGGCACACTGGGCTCTTCGGACAGAGCTAGCAGCTCCGTTTGATATCTACCCCCCTTGTTCACCCCGCGTGCTCAATCAGCTACAGTAGCTTTCAATCAAAGATTGATTGTTTTACAAGAAACCTGGGGTTCAATGCATTTATACGTGTGGGGCAAGTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCCCCGCGCGAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3474-5639 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNJR01000026.1 Actinopolyspora xinjiangensis strain DSM 46732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3474 28 100.0 33 ............................ GGGCGACATCACCAGCAAGGAAGCCAAGGACGG 3535 28 100.0 34 ............................ ACCGGTCGTCCGCTGCCCGACTACCCGCCCGCCG 3597 28 100.0 33 ............................ CCACGCGGCCAACCGCACCCAGCACGAGATCGA 3658 28 100.0 33 ............................ CAGAACCTGCAGGACATGTCGCAGGCGTTCGTG 3719 28 100.0 33 ............................ TAGCCACGGGCAATAGGGGTGATTTCGGAGTCT 3780 28 100.0 33 ............................ CACGCTCTCGGTCTCGGCGCGGATCTGCTCGGG 3841 28 100.0 33 ............................ CAGACAGAGAGGAGGTGACCACACATGACGGGA 3902 28 100.0 33 ............................ TGATGCATAGGTCCATAGCTCTTTCTCTCTTTC 3963 28 100.0 33 ............................ ACCGCGGCGCAGGTCGTGGAATTTTTGAGCGAT 4024 28 100.0 33 ............................ CTCGACGTGCCGAGTTCCACACCTTCCTGCCCT 4085 28 100.0 33 ............................ CGAGATCACCCATGTGATCGGCACCGAGCATCC 4146 28 100.0 33 ............................ TCGGGGATCCACTGCTCGTGGATCTGAGCGATG 4207 28 100.0 33 ............................ CGGCGGATGGATGTCTGATGATGCTGAAGGATC 4268 28 100.0 33 ............................ CCAGATCCGATCAGGACTCGCGTCGCGCTGCTG 4329 28 100.0 33 ............................ CGAGATCACCCATGTGATCGGCACCGAGCATCC 4390 28 100.0 33 ............................ GCGGGGGCCGGTGCGCGTCGCGGCCGCCGCGGT 4451 28 100.0 33 ............................ CCCCGTCGCGGGTCAGGGAGCGCTGTGCTCCGG 4512 28 100.0 33 ............................ TCACATTCTACTGACGGGGGTTACTCGTTCCGG 4573 28 100.0 33 ............................ TCCTCCACATCGCGATCCGACAGGAACGTTCCC 4634 28 100.0 33 ............................ CACCATGACCGAGACCTACGACATCGACGGCCA 4695 28 100.0 33 ............................ TCGCTTCACCGAAGCGGCGCACGAGGTGGACGC 4756 28 100.0 33 ............................ CCGACCCGCCGCGCCGGGCCACCACGACCACGG 4817 28 100.0 33 ............................ GCACGCGAGGCGAGTGGTCAGAGTCTCCGTGCA 4878 28 100.0 33 ............................ CTGGGTACAGCCCGCGCACGCTGATGGACGTGC 4939 28 100.0 33 ............................ GGAGTAAGCCGTGGCCACCAGCGAATCCCCGGA 5000 28 100.0 33 ............................ CTTGCCTACGGCATGGCGGTGACGGCATGACCA 5061 28 100.0 33 ............................ TCAGTGACGCGGGCATCATGCCACGGAGGTAAT 5122 28 100.0 34 ............................ ACCAGCGCACGGGGTGATCCACCGGGCGATCCTG 5184 28 100.0 33 ............................ TGGATCTCTAGCTTTGATCGCGACATGCAAAAG 5245 28 100.0 33 ............................ GCACGCCGGGGACGCGGCCACCTGCGGGCGGGA 5306 28 100.0 33 ............................ GTCGCTGCTGCTGTATCCGATGCCGCATCGCGC 5367 28 100.0 34 ............................ CTCGGAGGCCACGGGGCGGGGAACTGGTTTCCCC 5429 28 100.0 33 ............................ AGCCAGGCGCGCACGTGATCAGCGGTGATGTCG 5490 28 96.4 33 ......T..................... CCTGAACATGCCCCATCTCCTCCTCGGAGACCT 5551 28 100.0 33 ............................ GTGTACCCGTTCGACCGGCGCTTCCCCTCTACC 5612 28 89.3 0 .A......................C..A | ========== ====== ====== ====== ============================ ================================== ================== 36 28 99.6 33 GGATTCCCCGCGCAAGCGGGGGTGAGCC # Left flank : GCTGTCAGCAGGACAGGCCCGAAACCGTTGTTGCTCGCTCGAGAGTGCGAGGAGGCCGTTCGTGTGATCCACCGGCGTCCAGAGAGATGAGCTGTGCAGAAGCTGTGGTTCGGGCCGAGCTGATCCTGCCGAGCGGGGCGGCTGTTCTCGACATCGCGGACTTTCCCACATCTGCATAAAAGGGCAGTTCGATAACCGTTCCCTTCGCGGTCAAGCGAGGCACAACCGGGGCGAAGTATCACCCGATCTGCAACGACGTCAGTGTTTCCTTGACAAGGAAGCTTATTGACGACGCTCGTCCGGTCCGGCCACCAGACCGCGTAGCAGCCAGAGTTCACACGCTGCTCGAGGCCAACACGACCATGCGGCTACACGAACTACGCCTTCGATGACAGACTGATCGTCGATGCCCCTCCTCGTATCTTCCGATGTCGCGACAAGTAAGCACTCCACAAGATCACAAAACGGTAACCCACTCTGATTTTCCCAGCACAAAAAGG # Right flank : ATGTTTTTCGATCCATATTGAAGCTTTAGCGGATCTTTCACCACAAGCTAGTTGAACCCAGTGTCGGCACCGACGATCATCGGATCATCGCGGTTCCCCACTCACGTGGGGATGGGCCCAACAGTCCGATGCTCCACTGAGTTTGGTGACGTCGAGCGCGGTGATGCGCTCGTCAGCAGACGAGCAGCATCGTAGAGAGCAGGTCGCTGCTCCTCATCCATAAAGAAGTTGGGCGCGGTCATGACGTTTCCGGACGGACCGACATGGTCTCGACATAGCGGCGCGCTGTGCGGCGGCTGGTGCGGCAAGGTCGCGGTTGACCAGCAGGAAACAACCCTGTATCCAGCCGCGATAAGCGTGTCGACGAGTGTGCCCCTGGCTGCGGTCACCGTTCGGAGTGTCGGTGCCCCCGGCATCGAGGAAGCCCAGAAGCTGTATCCAATCCGAAGACCTGTACCCCTCGAGTTCGTCATGGCGCGCTCCCCCACCAGTTTTCGAGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATTCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 7480-7629 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNJR01000026.1 Actinopolyspora xinjiangensis strain DSM 46732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7480 28 100.0 33 ............................ GGGGTGCCCAACGCCGATCAGTACGTGATCTGG 7541 28 100.0 33 ............................ CTGCGGGCCATGTTCACCCCGTCCGGCGGTGGC 7602 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GGTTTCCCCGCGCGAGCGGGGGTGAGCC # Left flank : GGCTGCACAGCACCGCCGTGAATTGACCAATGAGCGTTGGAACGTCAGCCTGATCCCCACGGGGCCACCTGACCAGGGGTGAAGCGAAACGCATAGCCGATACTGAAAAACGCCGAAGGAATCGGCATGCCTGGCTGGTTGCTTCTCACGAGCTCTGGTTGATCTCTGCCGACCACTGGGTCTGTTTACGAAGTTGGAACCAGTCGTTGATGGCGACGATGGTCGCGGTGCCTTCGTGGCAGACGGCGAGTCTGTCGTACCTGACGACCACGGCGCGGTGATGGTGCAGTCTCACCGAGTCATCCGACCACGAGACCGCGTAGCAACCAGTGTCCACACGCTGCTACGAGACCAGCACGACCATGCTGCTACACCAACCACGCTATCGATGGCAGACTGATCGTCGATGCCCCTCCCCACACCTTCCGACGTCCCGGCAAGCGAGCACCCCACAAGATCACAAAACGATAACCCGCTCTGATTTTCCCAGCACAAAAAGG # Right flank : CGGCGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCCCCGCGCGAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //