Array 1 287271-285742 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEZJ01000003.1 Aliivibrio finisterrensis strain A32 NODE_3_length_332644_cov_76.1173, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 287270 28 100.0 32 ............................ TTTAGGGCAAGAAGGTAACGGCCAATAGATAG 287210 28 100.0 32 ............................ TTGCGCAGCATTGGAACCACTGGTATTTGTGG 287150 28 100.0 32 ............................ ACCAACTGGTAAGGCTAACGTGGCGGTACCAC 287090 28 100.0 32 ............................ AACTGGTGTAATTACAGGGACAGATGTAGAAA 287030 28 100.0 32 ............................ AATTCAATGGCGTAGGTTTCGAGCCTGACGAG 286970 28 100.0 32 ............................ TTTTAAAGATATTTTAACTAATGAAGATATAA 286910 28 100.0 32 ............................ AGAGGAATCTTATTGTGATAAAAATCCAACTA 286850 28 100.0 32 ............................ ACGACGAGAACATTCCTTAATATCAACATAAG 286790 28 100.0 32 ............................ TGTGAAATGCACAGATTTAGCCTCAAGATAAA 286730 28 100.0 32 ............................ TGTAAATCAAGTTCTTTATTTTGACGGTATAC 286670 28 100.0 32 ............................ ATGAAGCAGTTCTGGAGGGATTGCACCGCCAA 286610 28 100.0 32 ............................ AAAACCTAAAATCCCTTTACCTTCTTCTGATA 286550 28 100.0 32 ............................ GTGACGAACCCGAATTGCCCACCAAGCACCCC 286490 28 100.0 32 ............................ AAGAACAGGAATCATAGCTCCGACTTGCTGCG 286430 28 100.0 32 ............................ AACAGATGAACAAAAGGAGGATTTGTATACGA 286370 28 100.0 32 ............................ AAGCTTGAGCCAAAAATCTTCAAAGTAGATTT 286310 28 100.0 33 ............................ CTAGCGAAATGGCAGGGTTAATTAAAAGACATA 286249 28 100.0 32 ............................ GGTTATTTCCAGAGTTGCGTAAAGCGTGTCTT 286189 28 100.0 32 ............................ AACTAGGGCACCAACGGTCAAGCCATGCTTGC 286129 28 100.0 32 ............................ TAGCGGCCTACTCTCTTATTGCTAATCCACCA 286069 28 100.0 32 ............................ ATTGCCGTGAAAAATTCCACCGTATCAAATGT 286009 28 100.0 32 ............................ AGAAGATAAAGGTGAACTTGAGGCGTTATTTA 285949 28 100.0 32 ............................ AAGTGCCGACTTTGGTGTAAATAAGAAATATC 285889 28 100.0 32 ............................ GCTTGAGGCGAGCAACGTATCACCGTTGCAAC 285829 28 92.9 32 ...........TG............... TGAAAGCGATACCGCAATTGTGCGGCCTATGG 285769 28 75.0 0 ...........TG........AA.AG.G | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAAAGCAGTTATTTGAGATGAATTGGCTGAAAGGCTTACGTGATTATTGCTCTCAAACATCAATTTCATTGGTTCCAGAGGGTTGTCAATATCGCTGTGTAAAACGCAAACAAGCTAAAAGCGCTAATAATAAACGCAAGCGTTCTATTGCTAAAGGTTGGTTGAGTGAAGAAGAAGCGACATTGAAAATTGGTAATGAACAGCAAAAAATGTTGCGCTTACCCTTTGTTCAATTAAAGAGTACATCCACAGGACAGGTGATGAAGTTATTCATTGAGCATGGTGGATTGCAAGATAAAGCGGTTGAAGGTCAGTTTAATCGCTATGGATTAAGCTCATCAGCAACGGTCCCTTGGTTTTAACCCAAAATAACCAAAAAAATGGCTCTTTAAAATGAAGTAATAAAATCAGTAAGTTACAATAGGTAGGGGAAATTAGGTAAAAATGGGTATTTTCACTTATCTGCTTGTTGTAACTTATTTTTATGCTGATATTCTATT # Right flank : TTAAGAAAGAAGTTTGATAGCTATACCTCATATACTTTTAATATTTGCGGTATGACAGCGTTGCTAGAAAATTGATCTTGAATGGTTCTTTGGGCTGCGTGTTGAATTTCAACTTTATTAATCGATGACAATTCAAACCAGTGGAGTAGGGCTTGAGAAAGAGCTTCTGGCTCGGTTATCCACCCATTTACTTCTGTTTGTATGAGCTTACTCATATTCCCTACAGGGGTTGATATTACGGGTATGCCTCTGCCCATCGCCTCTAATGCTGTCATTGGCAACCCTTCGTAGCGAGAGCTGATAACGAGTAGGCCGATATCACTCCAAATGGTTTCCATTGAATCTTGGTGTCCATGAAAAGTAATATTGCTTGGTGGTTGTTTTTCCAGCTCTTGCTCCATCGGGCCTGAGCCATAAATATGAAAAGTGTGCCTAGGGTGTTTTTTTGCTAAGTCGATGAACCGATCAGGGGCTTTTTCATGGCTTAAACGACCTACAAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 298083-296855 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEZJ01000003.1 Aliivibrio finisterrensis strain A32 NODE_3_length_332644_cov_76.1173, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 298082 28 100.0 32 ............................ ATCGGAATAACAGCAATTATATTAATTTTATT 298022 28 100.0 32 ............................ AAATAAATACAAAGATAATCGCATTGACAATA 297962 28 100.0 32 ............................ TCAGTATGGTGCAACCCGCCATATAGCGATAT 297902 28 100.0 32 ............................ AGCAAGACGAAGAAGAAAAAACAGAATAAGAA 297842 28 100.0 32 ............................ ACAGTCAAAGATAAACCCACGACCCAAGAATC 297782 28 100.0 32 ............................ AAGCCGCCACCTGCTACGACAAAAAATATCAT 297722 28 100.0 32 ............................ AACAACAGTTTACCACGTTGGAGAAGATGACT 297662 28 100.0 32 ............................ TGTTAACTGGATAGCTGAGGCTATTGCTGATT 297602 28 100.0 32 ............................ ATCAAAAGAAAATAAAAAAAGATGTAAATCTT 297542 28 100.0 32 ............................ ATCTAAGTTTGATGCTAATCCATTTTTTCAAG 297482 28 100.0 32 ............................ AGAAAGGTTGATGGAGATTGGTACTGCTGCGC 297422 28 100.0 32 ............................ CACCGCCATTGGAGGGGATAAAAACTCGTAAA 297362 28 100.0 32 ............................ TCGCGCAGCTCGTCAAAAATAACAAAGTGCCG 297302 28 100.0 32 ............................ AAGCAAGTCCAATCCGTCTAGTTGCTCCGTCC 297242 28 100.0 32 ............................ ATTGACGATTTTCACGAAATGTTTGGCCGTGA 297182 28 96.4 32 ............G............... ACAAAGCATCCACGGTTCAGTTCTTACAACCC 297122 28 100.0 32 ............................ ACCGCCTCTTCAAATTGACTGACACATTCGTA 297062 28 100.0 32 ............................ TTTACTATGTTTCGGCGGCGAACCGCTAATAC 297002 28 100.0 32 ............................ ATTAAAAATTATCTCTAATCAATTTCCAAATG 296942 28 100.0 32 ............................ ACCACTCTTTTTAAAGCTAATCCTGGCAAACC 296882 28 67.9 0 .......A...C.....T..AA..ATTG | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.3 32 GTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATAAAGTAAAGGGAGTTACATAACTCGCACTTAATTGCTTTTCAACCTGATCAACAAGGCGCTGTTGGTTGCACCATAAAATGCAGTTATATTTTTGGTGATTAATGCTTTTAATTAGATTGATTAAGCAGACTTCAGAACCACGGATCCAATCATCACCATAATGAACAAACAGTAAGGTTGTTTTTGTTGTATTTTCCATAGCACACCTTCCTCGCATTCTCTCTGATATAAGAGATAGAGCAAGGGCAGTGCCAGATTGTAATTGTTTTTATTTTATTGATTTTTAAAGGGAATTATTATGTGTATAGATCAGTTTTCTCAAATTGAGAATGTGGTTTTTTAAATTGGGAATCAGAGAGATAAAAAATACCAAAAAAAATAACGTTAACAATAGAATAATAAAATCAATGAGTTACAGGTTGGTTGGGAAAGTAGGTTAAAAAGTAATATTTAAGCTATCTGCTTGTTGTAACTTATTTTTATGCTGATATTCTACT # Right flank : ATTAAAATAACGAGATAACCATCATAAAATATCGATAAATATACTATTTTATTTATGAAATAGTATTATAGTAACTCTTTGTTTAATATTAACTTTATTGATAAGGCTGTTAATAGTGGAGCAACTCTCTCGTTTATCAATTATTCATAAATTACTTAGCCAATCCAAATACCCAGTACCGAAAAGTAAACTTCTAGAAGCGCTAGAGTGCTCAGAATCCACATTTAAACGGATACTTCGTAAAATCAATGACGAATTTGATGCTTCAATCTCATACGATAGAGAACTAAAAGGATATGCATACGATTCTGATAGTCATCAACTTCCATTATCGTATCTGAATTTTACTGATAAAGAATGGTTTGCCTTATTAACCGCAGAAAAACTATTTACCGATCTACATACAGGATCATTAAATAAAGAGCTAGAAGGGATCAAACACGTTCTACAAAAGACAAAAAATCGAGCAACAGATTTTGGCATCGCTAATAAAATAGAAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //