Array 1 82254-83411 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021520.1 Neisseria meningitidis strain 11-7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 82254 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 82320 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 82386 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 82452 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 82518 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 82584 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 82650 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 82716 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 82782 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 82848 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 82914 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 82980 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 83046 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 83112 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 83178 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 83244 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 83310 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 83376 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //