Array 1 163016-161034 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNJ01000028.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016002 scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163015 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162954 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 162893 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 162832 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162771 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162710 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162649 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162588 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162527 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162466 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162405 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162344 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162283 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162222 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 162161 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 162100 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 162039 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161978 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161917 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161856 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161795 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161734 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161673 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161612 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161551 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161490 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161429 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161368 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161307 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161246 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161185 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161124 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 161063 29 93.1 0 A...........T................ | A [161036] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181871-179523 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNJ01000028.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016002 scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181870 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181809 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181748 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181687 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181626 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181565 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181504 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181443 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181382 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 181321 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181260 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181199 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181138 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181077 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181016 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180955 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180894 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180833 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180772 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180711 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180650 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180589 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180528 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180467 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180406 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180345 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180283 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180222 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180161 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180100 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180039 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 179977 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179916 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179855 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179794 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179733 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179672 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179611 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179550 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //