Array 1 777303-776435 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQOE01000001.1 Pectobacterium brasiliense strain LMG 21371 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 777302 28 100.0 32 ............................ GAAAACGGCAGGCCGAAATCAGAAAAAAGCCA 777242 28 100.0 32 ............................ GCAGCGTCAATAAACTCGCGGGCCATCTCTTT 777182 28 100.0 32 ............................ GATAGCGTAAATGCCATCCGGTCACAGTTGCT 777122 28 100.0 32 ............................ GCCGTTCGCCTCGTCGTTGACCGTGAGCGAGA 777062 28 100.0 32 ............................ ATGCCCGCGCTTGTCGCAGCTTCTCGAACATA 777002 28 100.0 32 ............................ GTTGAAGCTGGCGAGTTTGAAAAGAAGCAAGC 776942 28 100.0 32 ............................ ATGCGAAAACGTGGCGGAAGATAAAGAAAATT 776882 28 100.0 32 ............................ TTGCTCACTAGCCATTTTAATTGCGTCAGCAA 776822 28 100.0 32 ............................ TCGGAATTTATTAGAGCCATTAAATTTAATAA 776762 28 100.0 33 ............................ GTTAAAGCTGGATGACGGGAATTGAATGTAGGT 776701 28 100.0 32 ............................ ACCCGCGGCTTTGATGTTCAACAGCGCCCACA 776641 28 100.0 32 ............................ CTTACTGAGATAAAAAAAGGCGATAATATAAT 776581 28 96.4 32 ...........C................ TATTGATGACGTCAATGTTTGCCTCTTGAATC 776521 28 96.4 31 ...........C................ CGCGTCGGCGGGATTTTTTTGCAGGAAGAAA 776462 28 82.1 0 .............C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTTACAGAAGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAGTAAATCGCAGGCTAACCATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGTCTATTTCACAAGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CGCCTTAAGTGCCATTATCTGGCTATTATCGAGGTAACACTATCGTCAGTGTTTGATGTGTTATCGCCTTTAAATAACGTATTTTTGATTCCCTTTTCTCGTGACATTTTTAAGTAACGGGTTTCTTTGTGTGGGATGGAAAATTGCGGATTTGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAACCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACACTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCCATC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 785876-786442 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQOE01000001.1 Pectobacterium brasiliense strain LMG 21371 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 785876 28 100.0 32 ............................ GCATTATTCACCGCTGGCAACCACTGTATTCT 785936 28 100.0 32 ............................ GTTACCCCGTCTATGCAATTTCAGGATCAAGA 785996 28 100.0 32 ............................ GATGCGGTTGCGCTGGGTATGGCGACTGATGC 786056 28 100.0 32 ............................ ACGTTGATTCCTGATGGATTTGCGCCGCGAAA 786116 28 100.0 32 ............................ CATTAGCTCTGATGATTCATCGGATAGGTCGA 786176 28 100.0 32 ............................ ATACCCCGTGTGATTAAGAACATCTTGATATC 786236 28 100.0 32 ............................ GGCAAGACGCTTTGCTCTAACCATTCCTGCAT 786296 28 100.0 32 ............................ TAACGACTTCAGTGACCGGCCGAATGACACGC 786356 28 100.0 32 ............................ GCGATGATGACGAAAAGATAATGAGGAATAAA 786416 27 92.9 0 .......................-..T. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCGACGCTCGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAATGTAAAATCGTACCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTACGTCGACGCTCGGTGAACAAAGGCTGGCTGACAGAGGCGGAAGCCGCAGCACGAATTCCTGATGCGGTGGAAAAACGTAGCGCACTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGTCAGATGTTCTTCGTGTTTATAGAACATGGCCCGTTACAGGATGCTCCTGTCGCAGGACGCTTTTCCTCCTATGGCCTAAGTGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCAGTTGCAACCCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGACAAAAAAGTCATATTCTCTTTAACAATCTGGTGGTTAGATTAAAAACCTAACC # Right flank : ACTATCGAAATGCGTCGCTGGTGCGACGCATTTTAGAGGCTTATTCCCCGTGGAGGGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTTAGACTGTTTCCGAGCAGGCTACCTTTTAGGTGCGCCGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCAGGCACTAAACGATTAAAAAACTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGACGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCAGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //