Array 1 179677-175091 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJMF01000003.1 Streptococcus oralis strain BCA17 D8893_contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 179676 36 100.0 30 .................................... TTCGAGCAAGTACGCTTGCTTTGTCCATGT 179610 36 100.0 30 .................................... ATTCTGACGAAAATCCATGGTCATTTCCTG 179544 36 100.0 30 .................................... TGTTGGAAAAAGGTAAGGCGAAGCTCTTTG 179478 36 100.0 30 .................................... ATGATATCACTAGTGATATCATAGAACTAT 179412 36 100.0 30 .................................... TTTGCGACAAGCTTTTTTTACAAGTATTTT 179346 36 100.0 30 .................................... CCAGATGGGCTAGAAAAAGCTCGGTTGGTT 179280 36 100.0 30 .................................... AGCTTGTAAACATTTTATCAATGAACTCGT 179214 36 100.0 29 .................................... TTTTACAAAATGGTATACTAGTATCATAA 179149 36 100.0 30 .................................... TACAGTTTATAAATCTATTTTTATCTTCTT 179083 36 100.0 30 .................................... ATGTAGGTTCTTTGAGTGCTTCTTCAACGT 179017 36 100.0 30 .................................... GCCCTAGAGCTAGATGACATACTAGGCACT 178951 36 100.0 30 .................................... TTGTCAAGATGGAACCTGTCTGTACCGTCT 178885 36 100.0 30 .................................... AAAGAAGCTGGTTACTTTTTATTTGATCTA 178819 36 100.0 30 .................................... TTCGGGAAGTGGGCGCATGAGGGTAGGGCT 178753 36 100.0 30 .................................... CTTCCTATTGGTTTACCGAAGCGGTACAAG 178687 36 100.0 30 .................................... AAACGTTTTGACAAGTTGATGAGTGACTGG 178621 36 100.0 30 .................................... TAACCATCTACCCGACACTAGATAGTTTTT 178555 36 100.0 30 .................................... CTAAGTTATACCAATCCTGCCACAACTCAT 178489 36 100.0 30 .................................... ACTTGAAATTATTAAAAAAGCATTAGAAGT 178423 36 100.0 30 .................................... TTCTGAGGCTTTTAATAGAATTCTTGCGAA 178357 36 100.0 30 .................................... TATTTTCATCTAAATAGTTGCATAAATTGT 178291 36 100.0 30 .................................... AAGAATTCTTTATACTTAAATGAACCACCA 178225 36 100.0 30 .................................... TGACGTCACTTGTTCCGTATACGTCATTAG 178159 36 100.0 30 .................................... TTATTGGTAAGAACGATGGTAGCTCTACTA 178093 36 100.0 30 .................................... TCTTCTGTGTTGATTTTGATTGGGATAAAG 178027 36 100.0 30 .................................... CAAATCCAATTGAACTACCCCATCCTGTTG 177961 36 100.0 30 .................................... ACTCGGCATCAAACCAAGTAGTCTTATTCA 177895 36 100.0 30 .................................... GTCTTATCTAAGTCAAGATAGAGAGCTTTT 177829 36 100.0 30 .................................... ACGTAGCTCAGTTGGTGGAGCGATATGACT 177763 36 100.0 30 .................................... AGCTTGTAGTTTTTCCTAACGTAGCTTTTA 177697 36 100.0 30 .................................... TAGAAGGAATAGAAGAGGCTATCCATGGTA 177631 36 100.0 30 .................................... CTTCTGGAGTGGAATCCCGCTGTCGAATTT 177565 36 100.0 29 .................................... TGCATTAGACCTGTACCGTCTCCGTCAAT 177500 36 100.0 30 .................................... CAAAAGAACTCAGGTAAAACATCATGATTA 177434 36 100.0 30 .................................... TGACACGTAATAACGGAATTTCTATTTTAA 177368 36 100.0 30 .................................... CAATGGCTGGTCTTTTCAAAATGCCAATCG 177302 36 100.0 30 .................................... GTTAGCCGTCATATCTTCACCTTTATATTG 177236 36 100.0 30 .................................... CAGATGCAACAAGAGCAGTTGGAAGTACAT 177170 36 100.0 30 .................................... TACGATTTAAACCAGGCATAGTTTCCACCT 177104 36 100.0 30 .................................... TGACGAATACTTGAAGCAACTAGAAGTCCG 177038 36 100.0 30 .................................... AAAATAAATAATATTTATTTTCTTAAATGT 176972 36 100.0 30 .................................... CTTACCAAACGACATTGACGAGCTTTTCTT 176906 36 100.0 30 .................................... ATTTGGAATTTGCCACTCTGAGGTTTCGCC 176840 36 100.0 30 .................................... CTCACTGATGACTCACCTAACTTCAGCCTT 176774 36 100.0 30 .................................... TTGAAAATAATTATAGTCGCCAAACTCAGT 176708 36 100.0 30 .................................... GAAATGGACAATGTCCTGGAGGTAAAGAAA 176642 36 100.0 30 .................................... TTGAACTGAAATCATGTTATAATAAGGGAT 176576 36 100.0 30 .................................... GCATGCTTGCGCCGTTCGTATTAAGTTCCG 176510 36 100.0 30 .................................... GTTATTTTTATTTAAGAGGGCAAAAAGATG 176444 36 100.0 30 .................................... CTTCTTCATTTAATTTATCTGCTAATACTG 176378 36 100.0 30 .................................... TCAAAGGCTGTGTCTTTACCGTCTGTGTCA 176312 36 100.0 29 .................................... CTACTCACCAAGGAGCAGTGCAAAACATT 176247 36 100.0 30 .................................... TACTCGTAGACCTGAGTATATTCCGACTAA 176181 36 100.0 30 .................................... ATATGGGGTGATTGATATCTATGGGACGGA 176115 36 100.0 30 .................................... TTAGCGCCTTTGGCAAATAAACCAAACGGA 176049 36 100.0 30 .................................... ATAGCCAAGATGCATTCTTCAGCAAACGTC 175983 36 100.0 30 .................................... ATACTTTTAAAGCGTTATAGTACTCTACCC 175917 36 100.0 30 .................................... CAGCTCTCAAGATAGCGCTCAAAGTTCTTG 175851 36 100.0 30 .................................... AAATTGAGTCTGCGGCTAATAGAATTATCT 175785 36 100.0 30 .................................... CTCCTTTCCTTTTGTCTGATGATGTGTTAG 175719 36 100.0 30 .................................... GAAGGCCAAGAAGTAGCTTTCAAGGCTTCT 175653 36 100.0 30 .................................... ACGTTTCGGAATTTCTGAAATTGCCGAATT 175587 36 100.0 30 .................................... CCATGCTCTACCCTGAAGACGTGGATTATA 175521 36 100.0 29 .................................... CAGCTTACCATCTTGATACCGTTAAACAT 175456 36 100.0 30 .................................... TTACAGATGACGTCGTAGGATATATCAACG 175390 36 100.0 30 .................................... AGGCCTTGTTTGCGGTGTATTACTACGAGA 175324 36 100.0 30 .................................... CAGTCTTCCATCATAAGAGCATTGAGGCGG 175258 36 100.0 30 .................................... CAGTCTTCCATCATAAGAGCATTGAGGCGG 175192 36 100.0 30 .................................... TACCATCTTTAACGTAACATTTGATTGTTA 175126 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 70 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGACGATTTTCTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTGACTAATCATAGCGATTCATTATATATTGTTTTATTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAAGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCTCTAGAATTTATGTATGATCGCTTTATCAATCAGTATCCAATAAATCAAATACCTGATGAATCAGAATTTTTAACCTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTTTATCTGTAGAAGATCAAGTAGCATTAAAAATTTTGAATAATTTGTATCAGTACAAAATGAAAACAAAATTCCGTATTGAATCAGTCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATATTTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAG # Right flank : AGTCAAGCGATTTTCAACTTGTTCCTTATTTCTCTCTGTCTGCAGGGGGCAGTAATTCAATCAAAAAGCACTGAATGATCAGTGTTTTTTGTCTTAAAATAGAAACCATTTCAGATGAAAATGGAGGTGTGGTATAATAGGAGAAAGTATAAGTGCTTATTTGAAGGGGAATTTCTCTCCTTATTATGAGTATTAGGATTTAGTTTTCTGAGAAAAATAATGATGTTTGAGCAAAGAAGGAAATGGAATGAAAATTTCTGGGACAAGTGGTAACGTTACTTTTGACTATGAAAATGGCTATGTTCTAAAAGCAGAGGGAGAGTTGTTGACTGTTGGTAGCTTTATTGTATATAGGTCAAGCATACAGAATTGGGAGCCACCTTACAATCACATTCCTATCACACAGAACGAGATAGATAAACTTGTCGAGGAAGTGAACTCCATGATGACGGAGCAAACAATCCAGATCGAATTTATCTGAGTTAGAGTAGGAGAAGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //