Array 1 76724-71201 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDAJ01000002.1 Pseudomonas pseudoalcaligenes NBRC 14167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 76723 29 100.0 32 ............................. GCCATGGGTGTTCCTTGCGGCAGTCGTGGCAG 76662 29 100.0 32 ............................. TTGGTGATGCATATGCAACTGAGCCGGAATGG 76601 29 100.0 32 ............................. TAGGTGGTTGGTCAATGGGCGATAATGCCTAT 76540 29 100.0 32 ............................. GCGACCTTCAAGGCCATCTTCCCGTCTGGAAT 76479 29 100.0 32 ............................. TTGCCGAGGCCGTTGCAGCGGACGACCCTATG 76418 29 100.0 32 ............................. GACAGGGTGAACAACCATTACTTCCGCCTGTT 76357 29 100.0 32 ............................. GACAGGGTGAACAACCATTACTTCCGCCTGTT 76296 29 100.0 32 ............................. TAGCATCGGCAGAATGTCGCTGGCCAGCCCCC 76235 29 100.0 32 ............................. TCTGCGCGCTTCGTGGCGGCGTACCAGGCGCG 76174 29 100.0 32 ............................. CAGAATCAGGTTGTCAGTGAACTGGTTGTTAC 76113 29 100.0 32 ............................. ATGGTGGACTCTGCCCCTCCCCGGTGCCTGGT 76052 29 100.0 32 ............................. CGCCCTTGATCTCGAGCACCACGGCGGTGGCG 75991 29 100.0 32 ............................. ACCATGAGCACAGTTACACGGGAACACCTGGC 75930 29 100.0 32 ............................. ATATTGCCAAACACGTTGATGCGCTTGCCCGA 75869 29 100.0 32 ............................. GGCCTGCTGGTGCGCGATCAGATCAACGAGCC 75808 29 100.0 32 ............................. TCCATCCTGGTGCCGTACGTGTTCAACCGGCA 75747 29 100.0 32 ............................. CTCGGTGTACTGCTGCTGCATTTCCATGAGCT 75686 29 100.0 32 ............................. CAGCTGGAGGCAACCGGGCGGATGGCCGAAGC 75625 29 100.0 33 ............................. GTCGGGTTGGGTAACGTTCAGAACTATGCGGTC 75563 29 100.0 32 ............................. GGATACTCGAACTCGTCGGCCCGCTTGATCGA 75502 29 100.0 32 ............................. CCCTCCCCGGCGCCACGCTTCCGCCAGCGCGC 75441 29 100.0 32 ............................. GCTGACGTAGAAGCCGGTCTCCAGCACCTCTA 75380 29 100.0 32 ............................. CTGACGCAGGAACTCGGGATGTTTCAGATACG 75319 29 100.0 32 ............................. TTACATGCATGCACGTAGACTTCGGGAGGTTT 75258 29 100.0 33 ............................. CGATGGGAAACCGGTCGGCGCGTTGACACACTG 75196 29 100.0 32 ............................. GTGAATGGGGTCTTACCATTCAATGTTGTTTG 75135 29 100.0 32 ............................. CCCAACTGCCCGGTGATCTGCACCTCGGTGCA 75074 29 100.0 32 ............................. CCAGACGCTACCGAGCTGGAATACCTGAAAGC 75013 29 100.0 32 ............................. CAAACCCAACCCCTCCCGCTGGAGCAAAAGCG 74952 29 100.0 32 ............................. CTCGACGCTCACCGGGCATGCCGCGAGGGCTT 74891 29 100.0 32 ............................. CGGGGTCAGGTGGTGTTGTATGACACTGAAGC 74830 29 100.0 32 ............................. CGCACCCTGAACCTGAAAGGTGGGCAGGTGGT 74769 29 100.0 32 ............................. TTCCTGTCGGGCACCCGGCAGTTCTGGAACAC 74708 29 100.0 32 ............................. TTAGCCGAGGTTGATTTCGAGGGGCTTGCGAA 74647 29 100.0 32 ............................. GCTGCCCGGTCAGGGCGTTGATCGGCGCGCAG 74586 29 100.0 32 ............................. GATAAAACCCGCGAACTGAAGGGAGCGCTCAA 74525 29 100.0 32 ............................. GTGCAGTCGATGTTGTAGACCTGGGCGCTCTG 74464 29 100.0 32 ............................. AACAGGCGATTGCGGCCCATATACTCGCAGAA 74403 29 100.0 32 ............................. GGCGCGAGCCTCGCTTGGCGTCGCCTCGCCGC 74342 29 100.0 32 ............................. GCCTCGGCGGCCAGGTCGAGATACTCCTTAAT 74281 29 100.0 32 ............................. AAATGGTGTGCAACGGTCATTGGCCGAATTAC 74220 29 100.0 32 ............................. GCCTGAATCTCAGCCTCAACCTCTTCACGGGG 74159 29 100.0 32 ............................. TCGGCTACCTTTTCCGGTGCGCCTGAGCTGAT 74098 29 100.0 32 ............................. TTGTCGAGTCTGGTGATGATGAGTTTGCGCTA 74037 29 100.0 32 ............................. TGACGGCGCCAGTTGACGGCCCGCTGCAATGG 73976 29 100.0 32 ............................. CGGATGAAGGAAGAACGCCCGCATGAGTACGT 73915 29 100.0 32 ............................. GTGGCGCTGGTAGAAGAGGCGGTAAAAACCAC 73854 29 100.0 32 ............................. GAAGGATGCTTCCATCCGGTCGGCGGCATGGA 73793 29 100.0 32 ............................. CAGCAGTCCGGGCAGGTGTTCGCGGGTGATTA 73732 29 100.0 32 ............................. ACGGTGACATCCTCATCCCGCAATACGACGTA 73671 29 96.6 32 ............................T GTGTCGGGTCTGGTACGGGTTGCGATACCTGA 73610 29 100.0 32 ............................. GTCGGTTTGAACAGGCGGTTGAGTTCGCGGAA 73549 29 100.0 32 ............................. TGTCATCCTTACCTGAAATCGTAAGTCGTTGA 73488 29 100.0 32 ............................. CCGCTCATTCTCAGCGTGCAGGGCGTCGTAGT 73427 29 100.0 32 ............................. GAACGTGACGATGCCGCCGCCCAGCGGCGCAA 73366 29 100.0 32 ............................. GCGGCCGCGTGCGGCCTGGTCGCTGGCGACGT 73305 29 100.0 32 ............................. CATCAACGACAAACGCGTTGATGCGCTGGAGG 73244 29 100.0 32 ............................. CCCATGGCCTGGTGATACGCCTGAGCAGCCTA 73183 29 100.0 32 ............................. TTGGCTTGTTTGCTGATGTGTTGTCAATGGGT 73122 29 100.0 33 ............................. TATAACGCAATCGTTGTTCGCCGCGATGCTGCT 73060 29 100.0 32 ............................. GATGGCGGCGCCCGAGCAGGCAACGACTGTCA 72999 29 100.0 32 ............................. GACAAGATCGCCGTCCTTGAGGACACGAAGAA 72938 29 100.0 32 ............................. GGGGGATGCTGACTGATGGCCGTGCGACATTA 72877 29 100.0 32 ............................. CCCGGCAGCCGAGGTGCTGTTGCTGGCTATCG 72816 29 100.0 32 ............................. GCTGAAACAAGCAGCCTTGGTCAGCCCGCGAT 72755 29 100.0 33 ............................. GACTCCCAGGGGAACTATCTGTGGCGCCCAGGA 72693 29 100.0 32 ............................. TGCCGTTGGCAGTGTCGAAACGCGCCTGAGCG 72632 29 100.0 32 ............................. GATAGCGGCCAGGATGGCGAACCGAAGCGACC 72571 29 100.0 32 ............................. GCCCGGAATGGTCGCCGGGCGTCATGACCTAT 72510 29 100.0 32 ............................. TTGTTGATCGTATTGAGTGGGATATATTTTTC 72449 29 100.0 32 ............................. CTCTGCCGTGACTTTCACCATTGCTGTGGATA 72388 29 100.0 32 ............................. TGGGATAAGGGCGGCAGAGTCTGGCCTAATCT 72327 29 100.0 32 ............................. AACTGAATCGCTGGACTTCCCGGCTCCAATTC 72266 29 100.0 32 ............................. TATCTGGAGATTGCCCAGAGACAACTGCAAAT 72205 29 100.0 32 ............................. GCATCTTCGTTACCCTGTACCTGCCGATATGC 72144 29 100.0 32 ............................. ACGCCGATAGCACAGCACAGGCCGCGCCAGAT 72083 29 100.0 32 ............................. GCCATCGCGCTTCATACAAACTTGGTGGAAAA 72022 29 100.0 32 ............................. GGTGATTTATGAGTGAGTGGATTAGCGTAGAA 71961 29 100.0 32 ............................. CACATGCTCGACAGCGCCCTGATCATCCCAAC 71900 29 100.0 32 ............................. GACGGTCACGCAATCATGCACTCAGATGACGC 71839 29 100.0 32 ............................. GTCAATGCCCGCGTGCTGGTGGACTGGTGGCG 71778 29 100.0 32 ............................. CGCGCAGGCATCAAACCGCGCGGCCCAAACCA 71717 29 100.0 32 ............................. GTAGTTGGCGCCGACGGTAAGCCGCTGGTGGT 71656 29 100.0 32 ............................. GCCGCCGAGCGCCTGGCGCTGGAGTTCAACAT 71595 29 100.0 32 ............................. GTCAGGCTGTACCAGAAGGGCGCTGAACTGAG 71534 29 100.0 32 ............................. GGTACGGCGACCCGTCCATTGCACTACGTGAT 71473 29 100.0 32 ............................. CCCTAGCACTCACAGTGACGCGCGGCGGCGCG 71412 29 100.0 32 ............................. GCGGTGGATTGCCAGAGCGACACGGAGCTCGC 71351 29 100.0 32 ............................. GCGTTGGCCGATGTGCAGGCCGCCGCGTCGAG 71290 29 100.0 32 ............................. CCCCCAAACCCGACCAGGAAGAGAAGAAGGTC 71229 29 89.7 0 .........................G.TT | ========== ====== ====== ====== ============================= ================================= ================== 91 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GCGAAGATCATCCCCACCATCGAAGAGGTGCTGTCCGCAGGTGGTATCTCGCCACCCGAGGCACCGCCGGAGTCCGTACCACCAGCTATCCCCAACCCGGAAAGTATCGGCGATGCCGGGCACAGGGCGCAGTAATGAGCTTTCTGGTCGTGGTCACCGAGAACGTACCGCCGCGCTTGCGCGGACGCATGGCTATCTGGCTGCTGGAGGTGCGTGCCGGCGTCTATATCGGTGATGTCTCCAAGCGCACCCGCGAAATGATCTGGGAACAACTGAGCCGGGGGCATGAAGATGGCAACGTTGTTATGGCCTGGGCGAGCAACCACGAGTCGGGTTACGAGTTCCAGACGCTAGGCCCGAACCGTCGTTTGCCGGTGGACTTTGATGGCTTGAATCTGGTCGCCTTTCAGCCCTTGGAAAACCCTGATCTTTAACAAGGAAAAGTTGGTAGATTTTTAGCGGCTAATTTTCCCCTTTGGGGACAATTGGTTACGCTAAGG # Right flank : GGAGGGGGGCTCGGCACGCTGTTTTTTAGCCGGGCAGGCGAGTAATCTTGCCGCCGATGGTTCTGCGTGCACGTACATGACGCGGATGAAAAGGGAATAGGGTGCGGCGAATCTCGCCAACGCCCTGGCTGCCCCCGCAACTGTAAGCGGCGAACGATGCCCTCATGCCACTGACTCCGGTCGGGAAGGCGGGCGAAGTGCCAAGCCGTGAGCCAGGAGACCTGCCATCGATAACGGGCGTTTCGCCCATCCTTCATCCGAATCGTCGCGCGGTGGGCGCGGCAAAGGAACTCGCATGCATATCGAACCCGGTGTCGTCGAAGGCGCCAAGATCCTGCTCAGCTACGCAACGGCCGTCACCGCTTTCGGCCTGACCGCCAAACTCGCCCTGGACAGCGTCCGCAACAACGGCGGTGTCGCCGCCCTGGCGCTGCGCAGCCTGCTGACCACCGCGCTGGTGTTCTGCTTCTTCGAGGTGTTTCCGCATCATGCGGTGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 90855-87835 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDAJ01000002.1 Pseudomonas pseudoalcaligenes NBRC 14167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 90854 29 100.0 32 ............................. CGATGCACGCGAGCACGACCACGCACCAGCAA 90793 29 100.0 32 ............................. CCTGATCTCCTACCTAACAACGAGCTTTTGCC 90732 29 100.0 32 ............................. TTCATGGATTAGGCCCCCGAGACCGAAAGAGA 90671 29 100.0 32 ............................. CCCTGCCGGCTCAGCGCGGCCATGGCCTTGGA 90610 29 100.0 32 ............................. CCATGAGCGCTCTAACGTGGCGCCCGCCCAGG 90549 29 100.0 32 ............................. CGCTCAGACGAATACGACGGTATCTGATATGA 90488 29 100.0 32 ............................. ATGGTCGGTATCGCCGAGGCCAACCACGCCAG 90427 29 100.0 32 ............................. GAATCGACGCCAGCAAACTATCGACCGCCGCT 90366 29 100.0 32 ............................. GCGGAACGTCAGGGGTTTGAGGAGGGTTTAGA 90305 29 100.0 32 ............................. GGCTGCCTGGCCTAGCGCCGCGACCGGCTCGC 90244 29 100.0 32 ............................. GCAGCCGGGATTGATACTCACAACCTCAGCGA 90183 29 96.6 33 ............................T GCAAGAGGCGGTGCTCTACGCGCATGCACTGGT 90121 29 100.0 32 ............................. GCCAATGCACAGGGGTGGGTACGCAATCGCGG 90060 29 100.0 32 ............................. CCTGGCGCTTTGCCGGGTTAAGGCTGATGCCG 89999 29 96.6 32 ............................T CCAGACCAGCCAGAGTCAACACCTCCTGACTC 89938 29 100.0 32 ............................. TCAGGCTCTTTCATCAGGGCGCCTAGAACGCC 89877 29 100.0 32 ............................. ATTCAGCGGATAACACCCCTATACATATCGCT 89816 29 100.0 32 ............................. GCATTGCCCTTCGCTGCTGCGAGGCTTTGCGT 89755 29 96.6 32 ............................T TGTACGAAATAGGGCTAATCGATTACCGGTTC 89694 29 100.0 32 ............................. ACTGGCGCAAAACCAGCTTTGACGGCGCTCAC 89633 29 100.0 32 ............................. CTGCCATACATCGCCCAGTTTAGTGACAGGCT 89572 29 100.0 32 ............................. CCATCGAATTGATTTGCCCGATGGTAACAATT 89511 29 100.0 32 ............................. GGTCACGCATTGTCGTCCTCCGGGTGGTAGTT 89450 29 100.0 32 ............................. ATTGCCGACCATTTCAACGATGAAACAAAGAT 89389 29 96.6 32 ............................A GCATCAGCGCGGCCAGGACGATCACTGTCCAA 89328 29 100.0 32 ............................. TACGTGGCCGACCTGGCATATCAGGCAGGGAT 89267 29 100.0 32 ............................. CTAGTAACCAGCTCAGACGCTTGTTCGTGCGG 89206 29 100.0 32 ............................. TCCGGCTCAGCCTTGTTCAGCGCGCGCTTGCC 89145 29 100.0 33 ............................. GTGAACTGCTCCAGGCTGGCATCAACACCGGTC 89083 29 100.0 32 ............................. TTGCTGAAATTCGCGCATCAGGCAGCCTCCAC 89022 29 100.0 32 ............................. TGCTAAGGCGTTGGGTAGCATTATTATTTTGC 88961 29 100.0 32 ............................. AATGAAGTGCCGCCAACGCGACAGGCGCACGT 88900 29 100.0 32 ............................. AGCGCGGACGCTATGCAACACATAATTGATTC 88839 29 100.0 32 ............................. TAGCGGCTCAGGTGTGTCTGCTCAGCGGTAAT 88778 29 100.0 32 ............................. CACACGATGGAAAACAGTTCGCTATGACAAGC 88717 29 100.0 32 ............................. CCCGCAGCAGCTCAACACCTGGCGCGAGCAAA 88656 29 100.0 32 ............................. CTGGCAGTCAGCATCGTGCTGGGCCATCACCG 88595 29 100.0 32 ............................. CCGGCCACGTTCCAGATAGCAATGCCCAGGAC 88534 29 100.0 32 ............................. TTGGGGGACAGCTTGACGACACCCATCGAAAC 88473 29 100.0 32 ............................. TCGGTGAACTTGGCGAGATGCTGGTCAAAGAA 88412 29 100.0 32 ............................. CGTTGTAACTAATCCATCAGGCCCGGTTACAA 88351 29 100.0 32 ............................. ATCATGATTAACCCCTTACCACTGGCCGAGCG 88290 29 100.0 32 ............................. CCGAGCTGGCCAGCATCATCACCGCCCACCGC 88229 29 100.0 32 ............................. GCCACATTGTTACCGGGATCAAGAATGACTTC 88168 29 100.0 32 ............................. TTGATAGACGTTCATTTTCGCAACTTGTGCAA 88107 29 100.0 32 ............................. CACCCGGAATTTCCCGCCCGGCACAGTCGGCG 88046 29 100.0 32 ............................. CAGATTGATGCGCGGGAGGCGCTGGCAAAGGT 87985 29 96.6 32 .................A........... CGCATGGAGACGTTGGTTTTGCCGAACTGGAA 87924 29 100.0 32 ............................. TTCTGCATTTCCTCTTCGTTGCCTTCGCGCTC 87863 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GGAAACCATCCTGCCGCGCCTGTACCGGGAAGCACCGGTCAACTCGATCTGGGAAGGCTCCGGCAACGTGCAGTGCCTGGATGTGCTACGCGCGCTGTCCAAGGAACCTGGCGTGCTCGACGCGTTGTTCGCCGAACTGGGCGATGGTCACGGCGATGCCCGCCTGAAGGCGCATATCCAGCGCCTCAAGGCAGATTTCGCTGATACAGCCGACATCCAGTACCGCGCGCGCCAGCTCACCGAAGACATGGCCGTAGCACTGCAGGCCAAGCTGCTGCTGGAGGCGGGCAACGCCACTGTCTCCGATGCCTTTATCGCCAGCCGGCTGAAAGGCCGTGGCCGCGTCTATGGCACCCTGCCACGCGGTGTCGACGTCGAGGCGCTGCTAGCGCGTAGCACACCGAATCTGCTTTGATACAGGGGCAATCTTTAACAAGGAGAAGTTGGTAGGTTTTTAGCGGCTGATTTTCTCCTTTAAGGAACAATTGGTTAGGCTAAGT # Right flank : GCTCAAGCCAAGACGCACGAATCCTTAGGAGCGAGCTCTGCTCGCGAAGCTTCTGACTCATCCAGATTCACGAGCAGAGCTCGCTCCTACAGGTCAGGCAGTCAGGCATATTCACCGCGGCGCACTGGTCTCCCCCTGCGCTGTTGTCAGTCCAGAACGATGCTGGCACTTTGTTGGGCCAGTAACGATGCGATGCAAGGAGTGCCAGATGAAAGGATTCGCCGATCTCAGCGAGCAGGCCCGTCGTCTTTGGGCCAAGAGTGACGATGGCTTCGGTCATGGTGTGCTGGCGCATTTGCTGGATGTGGCGGCGGTGGCCGAGCGGATGCTGGCCCATGAGCCTCCGAGTACGCTGGATTGGGCCGCTCAAGCGCTGGGGTTGGAGCGCGAGCATGTCGCCCGCTGGGTTGCCTGCCTGGTGGGCCTGCATGACTTCGGCAAGGCCATCCCCGGCTTTCAGGACAAGTGGCTCGCTGGGCGGCAGGCTGATGAGGCGCTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16546-15138 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDAJ01000072.1 Pseudomonas pseudoalcaligenes NBRC 14167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16545 28 100.0 32 ............................ AAACCCCATCGGCGATTGCGTTGACGGTTTCG 16485 28 100.0 32 ............................ TGGCTGACGCCCGTGACCAGCTCAGTGATCAG 16425 28 100.0 32 ............................ ATAGGCGGCCAGTCTTGGGGAGGCAGGGCTGG 16365 28 100.0 32 ............................ TGGGCCTCTTTCATGTACGCGCTGCGCTTTTT 16305 28 100.0 32 ............................ TCCACGGCGCAGGTGATGTAGTCGGTGAGCCG 16245 28 100.0 32 ............................ AGCGAACATGACGCTCCTCAAGGAGGCGCTTA 16185 28 100.0 32 ............................ AGTCCGTTGCCTGCCGAAGTGGTGAAGCTGCG 16125 28 100.0 32 ............................ ACCAGCAAGAAGGCGACCGCAGCGAAGCCACC 16065 28 100.0 32 ............................ AGGAGGTTCCGATGTCAGATGTAACAAGTCCC 16005 28 100.0 32 ............................ TTCCCATCAGAAGCCTTCCAGGTCAGCACCGC 15945 28 100.0 32 ............................ TGGGCGGCAGCCCAGTCGGTCGCCGAGCCCTG 15885 28 100.0 32 ............................ TATAGGGGTGCGCGGCCTGGAGCGCAAGAGCG 15825 28 100.0 32 ............................ TTATGCTGCGGGAAAGTCTCGGCCACGCGCTC 15765 28 100.0 32 ............................ TATGTAGAAGCCGAGGCGCCTGACTGGCGCCT 15705 28 100.0 32 ............................ TTGTCGCGGAAGATCGCCTCGGCCGCTTCCCG 15645 28 100.0 32 ............................ TTGATCTTCGCGGCCATCTTCAAGAGCCGATC 15585 28 100.0 32 ............................ TATCCGAAACTTACACAGGCATGAGCGGCGAC 15525 28 100.0 32 ............................ TGCCTGACTGCTGCAGTGGGCTTCAGCGTGAC 15465 28 100.0 32 ............................ CAGCATCACGGCCACAGTCATAGCGTGCTCCA 15405 28 100.0 32 ............................ TACGAGCCGGTATACGTGGTGCGCGGCCAGGC 15345 28 100.0 32 ............................ TACGCCTGGGAGCGGGGCTCTGTGGACAGCGG 15285 28 100.0 32 ............................ AATCTCAGGCACGCGCTGTTCTTCACGCTGCA 15225 28 100.0 32 ............................ AGGAGGCTGAGCGCAAGCGCGGCCTGACCATT 15165 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AAGCGCTGGATAAGTTGCTGGCGCTGAACTGGCTCAGCGGCATGCGCGACCACTTGAACCTGGGTGAACTGGCGCCCATCCCGGCGAAGGTGCGCTGGCGCTGCGTCAGCCGCGTACAGGTGGACAGCAACCCGGAGCGCGCCCGCCGCCGCCTGATCAAGCGCCACGGCATCAGCGAAGCAGAGGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGCTGCGACCTGCCTTATGCCACCTTGCGCAGCAACGGCAGCGGCCACAGCTTCCGCCTGTTTATCCGCCACGGCCCACTGCTCGACAACCCCACCCCCGGCACCTTCGGCGCCTACGGCCTTAGCACCCAGGCCAGCGTGCCCTGGTTCTGACCCTTTTCCCAGCCCAAAACGGAGCCCTTGCAAAATCAAGCACTTGCAAGCGGCTCCGAAAAAAGGGGTAGCACCGGAAAAATCGGGCAGGTTCTTTAACAATCAAGCCGTTAGGGTTATTAGGCTCTA # Right flank : CTACAAAAACGCCGGCGCCTGATAAGCGCGGCAGTTCGACCCAGGTTTTCCAGGCCGTCTCACGATCCATGTTCGGGTCGAAGGCGTAGGTTTCCTGAGCCTGCACCACGTCACGGATGATCGGCCAGACTTGGTCGAAATCGGCTGCCTCGATGGGCCGGATGATCAGTTCATCGCTCACTGGTCGTAGCCTTCGGCCAGGTGCAGATCCTTGAGTTTCACGTAGTTGCCGGCCGTGTAGCTGAAGAAGTTGCGTTCCTTGTCGGTCAGCGGGCGCGCCTGTTTCACTGGGCTGCCGACGTAGAGATAGCCACTTTCCAGGCGTTTGCCCGGCGGCACCAGCGAGCCTGCGCCGATGATCACCTCGTCCTCGACCACCGCGCCGTCCATGACGATGCTGCCCATGCCGACCAGAATCCGGTTGCCCAGGGTGCAGCCGTGTAAGGTGACCTTGTGCCCGACGGTCACTTCGTCACCGATGATCAGCGGGTAACCATCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38640-39865 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDAJ01000027.1 Pseudomonas pseudoalcaligenes NBRC 14167, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38640 28 100.0 32 ............................ AGTAGCCAACCCCACGGCCACTGCATCGCCTA 38700 28 100.0 32 ............................ GAGACCTTGGCTGGAGGTGCGTCAACACCCGC 38760 28 100.0 32 ............................ CACGCCATGATTCCGCGGTCGCAGGTTGACTG 38820 28 100.0 32 ............................ GCCTGGATAACGTACACGCCAGCGGACGGAGA 38880 28 100.0 32 ............................ TTGCCGGCTCTATCCAGGCGGCGCGGTGTACC 38940 28 100.0 32 ............................ ACACGCCGAGAAGGGCCGGGGGCGCGTCAACG 39000 28 100.0 32 ............................ AGGTACGCGAGGCGGGGCTAGAGCTGGTGCGA 39060 28 100.0 32 ............................ GAGGCAGCACGGGAAACGGGGCGCAGCTCGGA 39120 28 100.0 32 ............................ GGTGATGGTCAGCCACGCCAACCTGCTCGCTA 39180 28 100.0 32 ............................ CGATGAGGCCCCGCCAGTCGCTGCGTTCTACA 39240 28 100.0 32 ............................ GCGACAGCGCCTTTTGTGCGGCTCCAGCGTCG 39300 28 100.0 32 ............................ GAACACCTGCTCAACGATTCCGCTGTAGTAGC 39360 28 100.0 32 ............................ TATCACTGCAAACAAAGCTGAGCGCAGAACTG 39420 28 100.0 32 ............................ ATCCGCATAACGAAAGAAACACCGGGCGAACA 39480 28 96.4 32 ...........................G TGCGATAGTCAGCGCACTGACGATTGCAAGCA 39540 28 89.3 30 ...........C.............G.C TGCGGAATCGTTGAAGACGGCTGCGAAACT 39598 28 82.1 32 .......A....A.G..C.........G TACGATCTCGGGAATTTGCGTATCTGGGATAC 39658 28 82.1 31 A...........C....C.....T...A ACCAGTGGGGCATCGTCATCGGACGGCTTTT A [39680] 39718 28 85.7 32 ..A.........C...........T..G CATAATCAGGAAATGGGAGGTGAGCCCTGTTT 39778 28 82.1 30 ..A........C.....C..T.....A. AATCGACCGATCTAGGGGCAGACGGGCTAG GG [39801] 39838 28 82.1 0 .......C.T.......C..T......G | ========== ====== ====== ====== ============================ ================================ ================== 21 28 95.2 32 GTGTGCCGCCGTGTAGGTGGCTTGAAGT # Left flank : TCAAAGACGCTTGCGTCATGCCGACAGCTTTTCGCAGTGCCGCGCTCGGCGACGACAGGGCCGGATTTAGGGCCAAGTGCATTGCTGTCTTCGATAAATACCGGGTTTTGGAAACCATGATCGAAACAATTAAGGACGCTTGTGATTGTCATCGCCGTTGATGAGAGCCAAAAGCGTTCGCTGAGGAGATCCAGGCGAGTGTTATCCAAATGGCTCAGCCAAATAGGCTCTCGCACATGGACTGGGAGCCTAAGCCAAGAGGGTATCCAGCAGATGCGCAGCGAGCTTGCAAAGGCAGCGAGTAAAACCAGTGCTGTGGCCGTTTTTGCTGTGCGATCAGGGCGCAGAATGACTCTTTTGTTCTTCTGTGGTGCTCGAACCGATTGGGATGAAAATGGCTGGTTTTCTCATAAATCTATCAGCGCAAAATGCCTCATTGATAGTGACTATTTATTGAAGCAAGTGATTGAAAAATAGAAAGTAATCGCGGATTTATAACA # Right flank : GCGTATGTTTCGAGTAGCCCAATAAGCTCGAGTCAGCGCCGTTTTTTGGGGTTCAACAGTGTTGCGCGATAAGCCTCGCCCTTCAGGGCAGTGAGGATGTCAACGATACAAAGAATTACTGACCAATAAACACCGCTTCAACTGCCGCCAAGGCTTGGCGCGCCCCCTCAAGCTCCGGCTGTATCAGCGTTAAGCCCCCCAGGTCGTTGCTCATCACCGACACGCAATCCTGAAGCGCTTTTTTGGCCTCAGTGAGAGCAGCCAACAGAGTAGAATCTTTGGCCTCCGCAGTAGTCGATGCCCCTTCTACTACGCTGAGGCGTTTGCTGAGAACGAAGTAGATGTGCGGGAAAACCAACTCCTGGACAACGCCTGCATTCTTCGCTGCTTTGGCTGACGCTTCTTCGACGATAGAAATCAGCTCTGCCTTGTGGATCGGGTTGAATAGTTGCATGTGGTGGCTCCCAGTGATGAATGCCCCCAGCATGCCGACCATTCCG # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGCCGCCGTGTAGGTGGCTTGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 6753-6364 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDAJ01000081.1 Pseudomonas pseudoalcaligenes NBRC 14167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6752 28 100.0 32 ............................ AGTTCCAACCAGGCTTCGACGAGCCTACGACA 6692 28 100.0 32 ............................ TGACCAACTCCGTCATCAAAGGCGAACAGCAT 6632 28 100.0 33 ............................ ACGTCCCACGCTTTCATCACCAGCTGGGTTTTC 6571 28 92.9 32 .T..........G............... TGGTCGAATCCGCCCAGCTCTACGCCCCGCCC 6511 28 92.9 32 .T..........G............... TTCATGTGCGCGGCGCGTGGCTTGATCTTCTC 6451 28 92.9 32 .T..........G............... TGCACGCAGAGGCCGAGTCGCTGCGGACTGAG 6391 28 75.0 0 .T.........T.........C.GCC.C | ========== ====== ====== ====== ============================ ================================= ================== 7 28 93.4 32 CCTCACTGCCGAATAGGCAGCTCAGAAA # Left flank : GTAAGCGGCCAACGCCGACAGCAGCAGGTGACTCAGCCAGAACGACACCGATTGACGCAACAAACTGACGTAGTCGACCTCATCGATCCGACCCCAGGTAATCAATGTGATGACAATGCCGATCACCCCGACCGCCAAGGCAACCCAAGCCACGTGGCGCGGCAATGCCGGCCACTCGCCCGGACTGGAATTCACTGCCGCAGCCGGCAAAGGTTCGAAGGGATTGGCTTGGCTCATGAGGTACTCCCTGTCGAGGTCTGAATCCATCGAAACGCGAGAGTACCGCCCCTCCCAGCAGGGCAATAGCTCGAGATGGCAGAACTGTGCGGTATGGCCAGACAACGGTCAGCACCTACAAGGCATGCCCATACCCATTTTTCTACGACGGACAAATCGTCTTTTAAAAATCAATGAGTTGCCGGATGACGAGAAAAAATGGTCAACCACCACCGAATCCCGCCATACCTTGAGCGATGCAAGTTTGCCGGCTATCGTGCCTA # Right flank : TTGGCAGCCACAAGCAAAAGGGCTTAACTGCCAGCATTGTTTCAGGAGCCCCTCATGGACGACATCAGCCCCTCCGACCTCAAGACCATCCTCCATTCCAAACGCGCCAACCTCTACTACCTGCAGCACTGCCGGGTGCTGGTCAACGGTGGGCGGGTGGAGTACGTGACCGACGCAGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAACACCACCACTATCCTCCTCGGCACCGGCACCTCGATCACCCAGGCGGCGATGCGTGAGCTGGCCAAGGCCGGCGTGCTGGTGGGTTTCTGTGGCGGTGGCGGCACACCGCTGTTCTCGGCCAACGAGATGGACGTGGAGGTCGCCTGGTTCTCGCCGCAGAGCGAGTACCGCCCCACCGAGTACCTGCAGAAGTGGGTAGGGTTCTGGTTCGATGACGGCAAGCGCCTGGAGGCGGCCAAAGCCTTTCAACTGGCGCGCCTGCAACGTATCCGCCAGGGCTGGCT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCACTGCCGAATAGGCAGCTCAGAAA # Alternate repeat : TCACTGCCGAATAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //