Array 1 132254-129118 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFS01000061.1 Levilactobacillus hammesii DSM 16381 NODE_167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 132253 36 100.0 30 .................................... ACGATTCCTGGTTTTGCTAGTCAGTCCCCT 132187 36 100.0 30 .................................... AAATCATGGTTGTACAATAGTTGTACGTTG 132121 36 100.0 30 .................................... AATGAGCGACTTAAAATCACCTAGCTATGA 132055 36 100.0 30 .................................... AGGCATTTGATACTCCTGGTTAGAATTGAA 131989 36 100.0 30 .................................... AGATAATTTCATATAAATACCTGTTAAGCA 131923 36 100.0 30 .................................... TTATTTCAGAAGAAGCCTACAACAATTTCA 131857 36 100.0 30 .................................... GCACTACCAGCAAGCATTGATAATACAGTT 131791 36 100.0 30 .................................... ATTAGCAACTCAAAAAAGCCTATCCCCACA 131725 36 100.0 29 .................................... GCGATTTAGACAGATTTAGATTGTGAAGT 131660 36 100.0 30 .................................... AAAGTTCGAGAAGAATACACAAAAGAAATT 131594 36 100.0 30 .................................... CAGTCCGGGACATTGTTGCTCTTAAAGCCA 131528 36 100.0 30 .................................... CTTTCGGTACCTAGTTGGACTTCAGCTGTA 131462 36 100.0 30 .................................... TACCACTGATTGATATTCTTTCCCGCGCGG 131396 36 100.0 30 .................................... GTGATTTTGGCCGCGGCTGATTTGCGGCTT 131330 36 100.0 30 .................................... TAAGAGCTTGCTTAAGCCCATACGTAGCGT 131264 36 100.0 30 .................................... CCGATGATTTGGAGCAACAGCGACAAGAGC 131198 36 100.0 30 .................................... TGATAAAGGCGGAACATCATCAGTTGTTTC 131132 36 100.0 30 .................................... ACTAAATCTTTAACATCGATGTAGTAACGG 131066 36 100.0 30 .................................... CCTTTAGTTGGTCATAAGTCCCTTGATATA 131000 36 100.0 30 .................................... AACGAGTCTACGCCTATGCTCAAGCGCAAT 130934 36 100.0 30 .................................... AAAACGGCTTGTTTCAATTCGTTGGGATCG 130868 36 100.0 30 .................................... ATAATATTTTGATGTTGAATCAATATGATA 130802 36 100.0 30 .................................... CGGCGGCAGACGTTTTAGACGCTATGAAAG 130736 36 100.0 30 .................................... TTTCTAATTTTTGATTAACATACATGTCAT 130670 36 100.0 30 .................................... CCATACGATAATACCTAGATGCCAAACGTG 130604 36 100.0 30 .................................... TTGATGATGAGTTGTCAGACAAAGAACGGG 130538 36 100.0 30 .................................... TTGTAGTTAAGGATAAAGCACCAAGCCGTC 130472 36 100.0 30 .................................... CAGCTTGAAGGCTATATGTTGAAGGCTTCC 130406 36 100.0 30 .................................... TTGACCTCTGGAAGTCAGGGAAACTCAGTG 130340 36 100.0 30 .................................... CGATTGGTCGTCGTGTACCATATCCTTATC 130274 36 100.0 30 .................................... ATTGGCTGCTCCTCATATCCCGACACAATA 130208 36 100.0 30 .................................... TTATCCGAGATTACTTCAAAGAATATGTTG 130142 36 100.0 29 .................................... ACGTGGAAGGTGAGGCGGCTCTATGGCAG 130077 36 100.0 30 .................................... GTACCAGATTGAGGGGGAAGACAAATGACT 130011 36 100.0 30 .................................... TGAGCGTGAAGCCTTACGTCTTGCTAATCG 129945 36 100.0 30 .................................... CGTGATAATTGGGGATGTACCGTATTTCGT 129879 36 100.0 30 .................................... AAAACAGCAAGGATTTGATGTTTAATAATC 129813 36 100.0 30 .................................... GAAGATCAGGGGGTAACAATCAATGGGCGC 129747 36 100.0 30 .................................... AAATGACACCTGAAAGTGTTAAGGGTGTTT 129681 36 100.0 30 .................................... CACAATGTTTTTCCACCCGCCGTAGCATTC 129615 36 100.0 30 .................................... GCGGCCGGGTCAAGGCTGCTACCTACTAGC 129549 36 100.0 30 .................................... TTAGAAAGGAGTGAGGATATTTGAAATACA 129483 36 100.0 30 .................................... CCGATAGCTGCCCCAGCGGGTCCACCAAAG 129417 36 100.0 30 .................................... TTTGATGGTAAAACCAAGTACGCCATCACT 129351 36 100.0 30 .................................... TTGGGGAGATTCCTGTTCACCATTTCTATG 129285 36 100.0 30 .................................... AGGTGATCACCTATGATCAGCATCGGTGAC 129219 36 100.0 30 .................................... AGCATTGCGTTTGAAGGGACGGCTGCCAAT 129153 36 94.4 0 ..............C..............T...... | ========== ====== ====== ====== ==================================== ============================== ================== 48 36 99.9 30 GCTTTAGATTAGTGACAATTCAGTAAGGTCAAGAGC # Left flank : ACAGTGGACTTAAATAGTCTATTTCAACGCAAGTTACAAACGCAGCTAATTAAACTGCTTGCGGATGATCAAGTTGTTGCGCTATCCGATGGTTTGCGAGAACTGTTATCGAAGCTATTGGAAGATAGCTACTTGATGGATGTACCTTTGGAAATGCCAGAAATACCAGAGTTAGCCAAGTTAGTCAAATTCAGTGGCATTCAAGTTACGACAGGTCCTGTAGATAATGCCTATGCTATAATTGAATCACTAATTAAGGTGCTTATCGAGTTAAATGATAAACGTATGCTCGTTTTGACTAATGTTAGCCATTATCTCCAGGTCAGCCAACTTCAATCGTTGGTGAGATTTATGGCTAACACTGATTTGCCACTGCTTCTAATTGAATTTTCATCTAGCCAACGAAAAGAATATTTCACTGATTGTGACTATCACTACATTGATAGTGACTTTGTTCTCTGGTAGTTCCTAACCGATGAGATATTAATGTGAAAATGACG # Right flank : AAGATTGCGAAACTGCACAACAAAAAGACGGAACCAGCACACTGCTAGTTCCGTCTTTTAATGATCCATACGTTAACGACGTGCGGATCATAGCGGATGAGAGGTAAATATAATTTAAAACGGTTTAGCTCGCCGCATAAGGGACGGGCTTACTGTAATAATAACCTTGGGCCATCTTGACGTTATATTCCTGAGCCAGTGCGACATCACCCTTGTCTTCGATACCTTCGAGGGTGAAGCCTAGCTGATAGGTGTCAGCAATCTTGCGCCAGAAGTTGAGGCTCTTCATCATTTCGTTTTGTCGATGCTGTAGCCGGAAGTTTTGCATGGCAAATTTGATGCTATCCATAAACGGCAGTACATCCTGCGTGGCTTGAGACCACGGATTATCTGTCCCGACATCGTCCAGACTAAGTTTGATATCAAAAGAACGATAGAGGGCGACGTACCGGTGAAGCTCCTCCAGTGAGGGGGCTTCAGTCAGTTCAACAATTAAATTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGATTAGTGACAATTCAGTAAGGTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 179326-180025 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFS01000064.1 Levilactobacillus hammesii DSM 16381 NODE_192, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179326 29 96.6 32 ............................T TGAGCTATCAGGAAGGGAGTAGTGATTATGTT 179387 29 100.0 32 ............................. AGGTGTCACTAGCTCAGTCAGCCCCGCCGCTT 179448 29 96.6 32 ............................T GCTCACCATGATGGTTTATGACGGCAAGATCC 179509 29 100.0 32 ............................. GGCCAGCTTGACTCATCGGCGATGCAACTACG 179570 29 100.0 32 ............................. TTTGCTTATATCAGCCTTCAAAAGATAGTCAG 179631 29 100.0 32 ............................. TGTAGAAAAAAAGGCCGCTACCCTTAGTGAGC 179692 29 96.6 32 ............................T ACACGAGTACTGGCGTTGTCTCAGGCATTCCC 179753 29 100.0 32 ............................. AGCGAATTTGTTCGGATGCCGACCGATAAAGT 179814 29 96.6 32 ............................T ACCGATCAGCACGCGGGGGCTTGTTTCGGATG 179875 29 89.7 32 ............CA.....T......... TTGATTGTCAAGTCAGGCGTGATGACTCATGG 179936 29 89.7 32 ............CA.....T......... TAGTCGCGACCGACATGGCCCCCCGGGTTCTC 179997 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.9 32 GTATTCCCCATATGTATGGGGGTGATCCC # Left flank : TAGTTGTGAGTGAAAAAATCTTTTCCAAGGACGAATTAGCAAAGTTTGATGGTCAACAGGGTCAGCCGGCCTACGTCGCCATTGACGGGACTGTCTATGATGTTTCTGGCGTGGATGCTTGGGCTGGCGGCAAGCATCACGGCAATCTAGCGGGGCAAGAATTGACCAGTGTTATCGATGAAAAGTCGCCACATGGTCGTAAAGTTTTGGCCAAGCTACCAGTTGTTGGCAAGTACGAAGCTTAAAGAAGACACCAGATTGGCCGGAAAACTTCCGGCCTTTTTTTGATTCGACGATTTTTATGGCTGAAATTAAAAAGGTATAAAACAAGTGACGCGCCGCAGGTAATTATCTGCAGCGCGTCACTTATTTCGTGGACATTGGGATGAGTGAAATGACAATTGTGGATGAGGCCGACCTGATGTATGCTAAAGACACAAGTTAATTGAAAACAGGGATTTAGCTGTTTTCAAACATTGGTGTGGCGGCTTTTGTTTAGT # Right flank : TCAAAATTCGTTTTAAAGGTGTGGCTAAGGTAGGTATTCCCCATGTGTAACGAAAAAATTGGTACTAAAAATCACAAAACGATTTCTAGTACCAATTTTTAATTGCTGAAATTTAGGACCTTTTGTCCCAAACGCCAAATATGATGTCGCAAGAGAGATTCGAACCCTCGACCTACGGTTTAGAAGACCGTTGCTCTATCCAGCTGAGCTATTGCGACCTAATGAGGTCTAACCAACAACTCCTTAATTATAGAGAAGCCGTCGCGCCCTGTCAATCGCGGATTAGCCGGGTTTACAAGTTGACAGCGCCCCCAGCTCTCCAGTAGAGTAAAGGCAGTTAGTGAGGGGGCAATGGACATGCTGGTCATCCACATCGTGGCAGAAATCGCCGTTTTCTTTTCGGCCATCTGTATTATTTACTATTTTTTTCAGATTACACAGGGGATGGGCAATAAACGGCAAAATTACGTGTATTGTTTATCCGCGGTGATTGTTCTATT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATATGTATGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10975-11797 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFS01000023.1 Levilactobacillus hammesii DSM 16381 NODE_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10975 29 96.6 32 ............................C GGTTGGTAAATCAGTTGTATCATTGGCAATAA 11036 29 100.0 32 ............................. CTGCCACATATGCCGTGGTAAATTATCAGGAA 11097 29 100.0 32 ............................. TTCGGCATCCCCACCGGCCTCTAAGAAAATCT 11158 29 96.6 32 ............................C GGCAGGGATTTACAACTAAGTTTATAGATGGG 11219 29 100.0 32 ............................. ATCCCGATTTAGATCGAGTGATCCCGGAATAT 11280 29 100.0 32 ............................. ATCCGCGTCAACGGTTGGTAAATCAGTTGTAT 11341 29 100.0 32 ............................. CCGCATGGCGGTGGCCGTTTGGTATGACAATT 11402 29 96.6 32 ............................C CAACTTACGGTAAACATCAACTTCTGTTTCAA 11463 29 100.0 32 ............................. GACAGACTTCACGCACCAGAGCGATGAAGAAG 11524 29 96.6 32 ............................C CCGGGATCGAGCGAAGAGACACATGATCGGTG 11585 29 100.0 32 ............................. AATGTGGTGGTATCATGTGGCGGTGAAAAGCT 11646 29 100.0 32 ............................. CCCTTGCTATCATTGGGTTTGTCCAATGGATT 11707 29 96.6 32 ............................C TTATCTTCAACATGGATCAGACGTTCATTCAT 11768 29 82.8 0 .............A..C.......T.T.A | T [11790] ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.6 32 GTATTCCCCATGTGTATGGGGATGATCCT # Left flank : ATTACGGATGAGATTATCTCGATTGGTGCGACGAAACAGGTGGGACGAGAGCCCATCACGCAGTTCTATCAGCTGATTAACACGGATCATGCTATGCCGGACAAGATAACCGCGTTGACGAAAATCACCGCAGATATGCTGGCAGAACAGGGGATTGCGTTGTCCACAGGACTGAAAGAGTTGAAGGACTTTATTGGCGATGCCGATATTATTGGCTATAATTTACGTTTTGATGAGGCCTTCCTGAGCAATGGATTACGGAAGACGGCTCAACCGGCATTGTCCAATAAGCTGGTGGACTTGATGCCCATCGTGAAGAAGTCTAATAAGTTTCTAGACAATTACCGGTTAGAGACGGTTTTAGCGGATTATGAGATCGAGAATTCTGAGCCCCATCAGGCCCTGTCGGATGCTAAAGCTACGCTGCTATTGGCGAACAAGTTAATTGAAAACGGGGTTTTGAAAATTTGAGAACGTTGGTCTGACGGCATTTTTTTAGT # Right flank : ATGTGAAACATCATCCGTGACCGCTCGTGACAATACCAAGAACGTTAGGAGCCTGCCTCAGAGCGGCACAAAAGCCCGTTAACGACGCATAATAGCGCCTGTTAGCGGGCTTTTCATTTGAACATAAATCACTCACGCTATGTCATCGTCCGGGTCTGTCCCCGTTTAACCAAATACAAGCCAATCAACCAAACCAACGACAACCCCAGTGCAATCGCCGTTTCCAACTCGAAGCACAGGATGACCGCGACAATTGCCAACAAGGCCAGTACGGCATAATCCGCGATGGGGAACCACGGTGCCCTGAATTGGCTGATCTCGGCGGCTGCTGACCGACGGAACTTCAAATGCGTCAGGATGATGCTGGCCCAGATGAAGAGAAAACACGTCGTTGCCACGCTGGAAACCAGGGTGAAGACCATACTAGGAATCAGGAAATTTAGCACGACCGCAAAGGTAATGACGAGTGCCGAGAAATTCAAGGCGTTCCCGGGCACCTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGTGTATGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //