Array 1 51173-52358 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABU01000053.1 Salmonella enterica subsp. enterica serovar Newport strain R8_0802_R1 NODE_9_length_178537_cov_1.26961_ID_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51173 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 51234 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 51295 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 51356 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 51417 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 51478 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 51539 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 51600 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 51661 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 51722 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 51783 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 51844 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 51905 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 51966 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 52027 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 52088 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 52149 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 52210 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 52271 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 52331 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69028-70643 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABU01000053.1 Salmonella enterica subsp. enterica serovar Newport strain R8_0802_R1 NODE_9_length_178537_cov_1.26961_ID_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69028 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 69089 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 69150 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 69211 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 69272 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 69333 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 69394 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 69455 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 69516 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 69577 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 69638 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 69699 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 69760 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 69821 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 69882 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 69943 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 70004 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 70065 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 70126 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 70187 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 70248 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 70309 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 70370 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 70431 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 70492 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 70553 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 70614 29 100.0 0 ............................. | A [70641] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //