Array 1 1587-777 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL543969.1 Vibrio rhizosphaerae DSM 18581 BS26DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1586 28 100.0 33 ............................ CACCAGCCGCAATGATCAGTTTAATTCCATATA 1525 28 100.0 32 ............................ GGACAGAAAACGGATATGGTAGCGTTTAACGA 1465 28 100.0 32 ............................ AACACCAATCCCACTAAATAACGCACTCACCG 1405 28 100.0 32 ............................ GAACTCCGGCGAATGAGGATGACCGGTTGGTG 1345 28 96.4 32 A........................... TACGACTCTCGCAACTGCGGATATGTCTACGG 1285 28 100.0 32 ............................ TCGCTCATAGCAAGGTGCTGGATGTCCCAAAT 1225 28 100.0 32 ............................ TGCTCTGGAATTTGATTTGATGGATACTCAAA 1165 28 96.4 32 ............G............... GGGCAGTCATATTCAGCTGGCGGGGTTCCGGT 1105 28 96.4 32 ............G............... AGGTTGCGCAGGACGTCCCGCCGGTATTTGGC 1045 28 96.4 32 ............G............... GAATTGGAACTTCGATCCGTCTACACCCGACG 985 28 100.0 32 ............................ TTGTGATAAATGCATGATTGGAGTAGAACCCC 925 28 100.0 32 ............................ CTGCTGTGAACTGAATCGAGGGCTGTTTTAGA 865 28 100.0 32 ............................ TTGTTCCAGATGAGTCACCCGTTGATCTATTT 805 28 85.7 0 .............C.........T..CT | T [779] ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATCACGGAATACGCCTGTTTTTCTCGCTGCAATCCTAAGTCACAACAGCAGCGTTTAAAACAGCTTGACCGTCGGGTCGCTCATTTGTCGCACAAGCATGGAGTGGATGAACATGAGATGCGGAGTGTATTGCTCACTTCAGTGAAGAAGCACTCTGGTCGTAGTCAGTTGCCCTATATTCGTGTGCAGAGTTTATCTACACCGGCTGAGGGGCAGCACCGCCATCAATTTATGCTGTTTATTCAATGTGATAAATCGAACTCAGCGCCCGATGGTGGCAATGGGTTTACGTGCTATGGTTTGAGTGCGAAAGCCAAGGGGAAAGAAACATTCGTGCCGTGGTTTTAACCTTATTTTTCAGAAGGTGAGACCCTTTATTTTTCGCTCTTTAAAAACATCAATAAAAACAATAAGCTACAGAGAGGCGGTTTAAACAAGGTCAAATAGGGTCTTTCCTGTTAACTCCTTGCTGTGGCTTATTTTTCTGGGATAAGTTTATT # Right flank : TGGAGTGGCACGCAGTGCATACCGGTGCCACTCCGCTTGTTTTCAGCCTATCGCTGGTTTACTCATCAAGCATCATTTCTTCTTTCCTCAGATTGATCTCATCAAAGGTAATCAGATTATTGAGAAACAGGAGGATTTCTCGCAGTTCAACTTGGTTGACGCTGGGATCAGTATTGGTGACAAGAAAATCAATCAGATAGCCGCGGGCGGTCAGGTGGAGGTCAGGATTCGGTTGTTGGTTTTGTATCATAAGTATTCCCTCTGAGGATTCATGTTTCCACCACTCAAAGGTTCCTAATCTTCGGGTGGTGAGTTGGAACAGGGTTAGGAACTACCGCCTCAAAGGGTAACGGCCAGCTAACGCTGCCCTGCCCAACACACCATAATTAAGACGTGCAAGGCTACACATAAAGCCTATCTGATACAAGATGGCATTGATGTCCCTTTGAGAGTCATACAGGTTCCTAATCCCGACACCGTTTTTTTCGGTGCCTGTGCAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11038-10288 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL543969.1 Vibrio rhizosphaerae DSM 18581 BS26DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11037 28 96.4 32 ............A............... GCGAGTATCAACCGTTGCATCATCAGGCGTCG 10977 28 96.4 32 ............A............... GTTTGTTGAAGCAGAAGAACAGACAATCAACT 10917 28 100.0 32 ............................ ATAAAATCCCGATAAATAAGATTGTTGAGGGC 10857 28 100.0 32 ............................ ATTGAGCCAGCGACGCACGGTAACAGGCTCGA 10797 28 100.0 32 ............................ TTGAAGAAAGCCATTAAATTTCACACCTTGCG 10737 28 100.0 32 ............................ AGAAACATCTAATGAAACATTTTCACTAGTAT 10677 28 100.0 32 ............................ ATAAGATGTTTAGCTAGGTTGTGTGCTAATTC 10617 28 100.0 32 ............................ TTTTTGACTGGGTTTCACTTTGACTATTTTCA 10557 28 100.0 33 ............................ TCTACTTCGATTTCGATGAATTGCCAGTATTTT 10496 28 100.0 32 ............................ CAGCGCCTTTTATTGCAAGATTGATGCTTTTC 10436 28 100.0 32 ............................ GGGAACGTGGAAACGTCTTTCGGTGTTTCGTG 10376 28 100.0 33 ............................ TTCTAAGGTTATCGCCCTAACGGGCATTTATGT 10315 28 85.7 0 ............AC.......A..A... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.3 32 GTTCACTGCCGCGTAGGCAGCTTAGAAA # Left flank : AGAACCAGCTTTTACGGGCGTCCTGCCCGGAAAAGCCTAACCATTCTTCCTTGAATGGTTTTCTTCGGTGGGTGGTTTGTTTGAGTGAAGTGAAACATGTTTAGAACGAAACTCAATTGATCGATGATCTCAGGGTAAAATTCATGGATGAATTTTAAGCTTTTCGTGAGCAGGAGCGAATAAAAGCGTCCCTGATAACAGGCGCTGAACTCAACCCCGAGGCCTTTTGGGGTACTTTTTCGGCCTTGAAAAAGTACCTGGGGCGCAGTCGGAGATGCTAATGATATCGAGGGATTTGATTGCGTCCCAAACCAGCAGCCTATCATTTTTATCTTCCCAGCCTCCGGCCCCCAAATTTGAAGCCATCAGACCCTTTATTTTTCATCCTTTAAAAACACGCTTAAAATCAACAACTTAAAAACAGACAATTTTAACAAGGTAAAAAAGGTTTTTTTCGACTAACCTTTTGCTGTGACAGGGTTTTTCGTGATAAGTTTATA # Right flank : GAGGTGGTAGTCGTTGTTGTGAAAACAGAACTATGAACCACTTATCGAAAATGCAACCTCATGCATTCAATCAACAATTGTCTCTGGTATGATCAGTGGAGATGATTGCTTGAGGTAAACCCATGGATGACCTTTCCCCCTCCGACTTAAAAGTCATACTTCACTCTAAACGCGCCAATATGTACTACTTAGAGTATTGCCGGGTGATGCAAAAAGACGGGCGTGTGCTGTATCTCACCGAATCAAAAAAAGAAAACCTCTATTACAACATCCCCATTGCCAACACCACCGTCTTGCTTTTAGGCAATGGCACGTCGATTACCCAAGCCGCAATGCGCATGTTATCTCAAGCCGGAGTATTAGTCGGATTTTGTGGCGGGGGTGGTACGCCGCTGCATATGGCAACTGAGGTGGAATGGTTTACGCCGCAAAGTGAATATCGCCCGACCGAATATCTGCAAGGCTGGCTCTCTTTCTGGTTTGATGATGGAAAACGCCTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 12780-12331 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL543969.1 Vibrio rhizosphaerae DSM 18581 BS26DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12779 28 100.0 32 ............................ ATCTGGTGAGATTAAATCAGAATTGCATTTGC 12719 28 100.0 32 ............................ AAATTATACAAAGATAACAACGGCTTTTGTTG 12659 28 100.0 32 ............................ GGACGATTTAGCAGATGCAACAGCAATGGGAA 12599 28 100.0 32 ............................ AGCGACCAAATCACCCGTAACAAGCGGTGATA 12539 28 100.0 32 ............................ GGATTGATACAGCGCGTCAGATGGGAATCAAT 12479 28 100.0 32 ............................ AAGAAAGCGGCCAAGTTGCGCTTGGGATAACC 12419 28 100.0 32 ............................ TTCCATGCGTTTCGTGATGTCACAATGTAATC 12359 28 85.7 0 .............C.........T..CT | T [12333] ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTTAAGCTTTTCGTGAGCAGGAGCGAATAAAAGCGTCCCTGATAACAGGCGCTGAACTCAACCCCGAGGCCTTTTGGGGTACTTTTTCGGCCATGAAAAAGTATCTGGGGCGCTTCGGAGATGTGATTGAAATCGAGGGACTTGATTGCGCACCAAACTACTACATTACAAGTTTTATATTCCCAGCCTCCGGCACCCAAAATTTGACGCCATCAGACCCTTTATTTTTAACCTTCAAAAAACACAATTAAAATCAACAATTTAAAAATAAGCATTTTTAACAAGGTAAAAAAGGGTTTTTTCGACTAACCTTTTGCTGTGACAAGGTTTTTCGTGATAAGTTTATT # Right flank : TGGAGTGGCACGCAGTGCATACCGGTGCCACTCCGTTCGTTTTCAGCCTATCGCTGGCTTACTCATCAAGCATCATTTCTTCTTTTCTTAGATTGATCTCATCAAAGGTAATCAGATTATTGAGGTACAGGAGCACCTCCCGCAGTTCATTTTGATCGACATTGGGGTGGGTATTGGTGATAAGACAATCAATCAGATAGCCGCGAGCTGTCAGGTGTAAGTCAGGATTTAGAGATTTAGGCATAATAACCCTCTTGATGTGGAATATTAAAAACTATCACCACTCAGAGGTTCCTAATCAATGGGTGGTGAACTGGACAAGGTTAGGAACTACCGCCACATCAAAAACGGCCAGCATAGCTGCCTGTGCCCAGCTCACCATAATCGGAGGAGTAGGCTACACATAAATATCAATCGTCACAAGACTGATAGATGCGTGTCTGATGTATTGCGGGGTTCCTAATCCCGACACCGTTTTTTTTCGGTGCCTGTGCAGCGTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //