Array 1 2440-887 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXJK01000195.1 Clostridium sp. HV4-5-A1G NODE_195_length_2486_cov_1388.91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2439 30 100.0 37 .............................. TCCTAATCACCATCTTTCAATAGTTCAGGATTTTCAT 2372 30 100.0 35 .............................. TAGATGCTAAAAAGGCTATCAATGATGCAAAAAAA 2307 30 100.0 38 .............................. GTGGCATTATTATAAAATTTGACTAAAGAATGGAATTG 2239 30 100.0 36 .............................. TAAGTTTGACTTTGATAAGAACCAATTTGTAATTAA 2173 30 100.0 36 .............................. CTGACAAGTATGGTAAGCAAAGCACAGATAGAGCAA 2107 30 100.0 37 .............................. TACCTTTTGTACACCGAGAAGAGATAAAAGGATTCGC 2040 30 100.0 36 .............................. GCAGTTTCAGCGGCCCAAAAGATAGCCGCAGGGACA 1974 30 100.0 35 .............................. TATAATAAAAACGTTTGGTTTAGAAATAAAGTAAA 1909 30 100.0 37 .............................. ATGTCAATGTGCCCGTGCCTTTATACCCCATGTATCT 1842 30 100.0 37 .............................. GTAAAAAAGCAAGAAGTATAGGACTTTATGACAAAAG 1775 30 100.0 37 .............................. TAAGTTTCTGGTATGTTCCCCTGTCAAAATCCACAAT 1708 30 100.0 36 .............................. TAACTTCTACCGGTTTGTCAGGGCTATATTCACTTA 1642 30 100.0 36 .............................. CTATAAATTAGGTGATGGTGCTGTTGTTTGTAATGA 1576 30 100.0 36 .............................. AGAGATATAAGATTTAAGGCACTATATAACGGCAAA 1510 30 100.0 37 .............................. TGTGTTGCCGCATACTGGCGATACCAGTTTTCTTTCA 1443 30 100.0 36 .............................. TCAGAGAAAAAAAGTTTAGAAACAATAATAGATTTA 1377 30 100.0 35 .............................. TAAAGATAGCCAAAATATCAGCCTACAAAATTAAA 1312 30 100.0 36 .............................. CGGAATAAGTATCATCCCGCTGACATAGATGAAATT 1246 30 100.0 35 .............................. AGCTATGCCCTTTCCAGTATGCTATTCCTTATGAA 1181 30 100.0 35 .............................. AGTGGACTTCTGATTATAGCGCATTTGGAAAAGAA 1116 30 100.0 35 .............................. CAACATGTGTAGGTAATGTATTTTTTGTCATACTA 1051 30 100.0 38 .............................. GTGCAAGAAAAGTGCAAACTTTGTGCAAGAACTGTACA 983 30 100.0 37 .............................. CTATCTGCAAGCTGACCGCATATATGCCGCTATCCAA 916 30 96.7 0 .................G............ | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 99.9 36 GATTTTAGACTACCTATAAGGAATTGAAAC # Left flank : GGAATTGAAACTAGAAACAGAAATATCTATAGTTTTAGCTGCGGGG # Right flank : TCATATATTGAGGGAATGAGTATTTTTGTAGTCATTATTACATTGCTTTTTTACAACTGTGAACTACCACCACTTATAGAAGTAGATGGCTTCTTAGTCAATATTCCTAATGGAACAAGTTTACCTAAGCTCTAAAGGTCGAACCAACCTCAGTGTATTACCAAAATTATATGGCTAATTTCAGCAGATTTTTGCTGGCGTTTATATCCCTGTCATGGTGTGTGTCACATTTAGGACAGGTCCATTCCCTGAGTGCAAGATTTTTTACTTCTCTATTCTTGTATCCACAAACTGAACATAATTGACTACTTGCATAATTACCGGGTGCCACTATCATTTTTCTGCCATACCATCCAGCCTTGTATTCCAGCATTCTTCTGAATTCACTCCAGCTTGCTTCGCTTATTGCCTTTGCCAGCCTGTGATTCTGCTGCATATTTTTAACTTTTAAGTCCTCAATAACTATAGATTGGTTTTCTCTGATTAGTTTTATTGATAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTTAGACTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 3488-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXJK01000114.1 Clostridium sp. HV4-5-A1G NODE_114_length_10245_cov_297.194, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3487 30 100.0 37 .............................. CTTTTTATAGGAGTTGTAATATGCTGGTTTATATTAG 3420 30 100.0 37 .............................. GCACTTGCAAATGCACAAATGAATTTAGATAAAGCTT 3353 30 100.0 36 .............................. TTGCCTTTTTTAATTCCATACATTACAGAGCCAGCC 3287 30 100.0 37 .............................. GCTTTTCCCCTGCCCCTATTTTGAGGTGGGGATATTT 3220 30 100.0 37 .............................. ACCCTTGAGGAACAGAATAAAATAATATTGAAGCTTG 3153 30 100.0 36 .............................. TAGAACACATTTATATATTTTACATGTACAGGTGTG 3087 30 100.0 38 .............................. TAGAATACATTGTATATTTTGCAGTGTATTCGATTAAG 3019 30 100.0 35 .............................. AGAGGGAATACGCAGATAGCGTTGTCGCTACAATT 2954 30 100.0 36 .............................. CTGTCTCGTGACTAAAATTTGGGTCAAGGATATACT 2888 30 100.0 36 .............................. AATTCTGCTGCTACTGCAAGAATAAGAAACTATCTA 2822 30 100.0 36 .............................. TAGATAAAATTGCAAAAGCTTTAAATGTATCTCCTG 2756 30 100.0 37 .............................. TATCAACATTGTAAACTGGAAAAGCTGTGGGACCGGC 2689 30 100.0 38 .............................. CCAGTTTTAAAGGCATCACCTATCAATCCTATGGCTCT 2621 30 100.0 36 .............................. AAGCTATAGAAAAAGATAGAGATGCTATGCAATCCA 2555 30 100.0 37 .............................. TTGATTTTACAGCCCTTTTTAAGAGATCATCTCTTTT 2488 30 100.0 35 .............................. CCTTTAAATTTAACTATATCATCATGTTGATCGTC 2423 30 100.0 36 .............................. TCCTATGGCGTGGTATAAGCTTGAAGATATAGCAGC 2357 30 100.0 37 .............................. CAGAAATAGAAGGAACGCCAGAGATGCGAGAAGATAT 2290 30 100.0 36 .............................. TCTAATCCTTCTTATTGCGCCATTGATTCGTCTATA 2224 30 100.0 37 .............................. TCATTTTTTGTTGACTATCTGAAAATGTAACGCCTGA 2157 30 100.0 36 .............................. ACTTGTATCGTATGGCAATAATCAGACAATGTATGT 2091 30 100.0 36 .............................. AGCAATTCAGCAAAAATGATTGTGTACCAATTCAGT 2025 30 100.0 37 .............................. TTATTTTTTGAAAACAAGAATAGAATATTAAAAATTC 1958 30 100.0 37 .............................. TAGCATCATATCTAGGTCTATATTCCTTTACTTCCTT 1891 30 100.0 37 .............................. CTGTATCCATCAGATTTATACTGGAGTCTATAATTAA 1824 30 100.0 36 .............................. CTTTTATCCGCACGGTTGAAACACGCGTATAGCTGT 1758 30 100.0 36 .............................. AAGAAGTGAGGAGGCATAAACTATGATTATATGGTA 1692 30 100.0 38 .............................. TAACGTGAAATGAAGGAAGGAGGTCATAGAATGGCTAG 1624 30 100.0 37 .............................. AAGAAGTAAAAGTAAGACAGCCTATCGAAACCAGAAG 1557 30 100.0 37 .............................. TTTGCAGAACCAAGGCCACCCACTAAAATTCCATTAG 1490 30 100.0 35 .............................. TCATTTATCTCTACGCCATAATCACTGGCAGCTAA 1425 30 100.0 37 .............................. TTTCCTTCGCATTTAGTTTAGAATTTTCATCCTTCCA 1358 30 100.0 36 .............................. TATGTCAATGCCCTTATCTGCGCATCTGTCATCTGA 1292 30 100.0 38 .............................. CTATCTGGAGATGAAATTAGCCAGTTACCGAACCTGGA 1224 30 100.0 36 .............................. GCGGCTACGAGATCATCAAAAGTTAGTTCCTGCTGT 1158 30 100.0 36 .............................. TAGAAACAGAAATATCTATAGTTTTAGCTGCGGGGC 1092 30 100.0 36 .............................. AAAATTTTAGAGATGCAAAGAAAGCAATAGACGAAG 1026 30 100.0 36 .............................. TATGGAGAAGATTAGAAAATATTTTGGTTGGCAGTT 960 30 100.0 37 .............................. TTCCTAGTGCAGCTGTAAGCCATGCACTTACATTTCC 893 30 100.0 37 .............................. CTCTCTGCGTAGCAGTCTGTCCTGCAGGAAGCAGAAA 826 30 100.0 35 .............................. TCTTCTAGGAGGATTCTTTGGGGTGGCAACACAAG 761 30 100.0 35 .............................. CTTCCTCATTCATGGTCCCAATATTGACCAAATCA 696 30 100.0 38 .............................. AGTATAGCAATATAATTCCCTCTATCCAGATGAATTCC 628 30 100.0 37 .............................. AAAATATTGCAGGATAGTTTCCATTCATATAAACCTT 561 30 100.0 35 .............................. CTTCTTCTGCCCGTATTTAATTTTGATAAATAATC 496 30 100.0 35 .............................. TACAAGGCATTGAGTCAAAGATAAATGCAGTTAAG 431 30 100.0 37 .............................. CATAACTCCATAAGCTCTATTGAGCCCATAATATCCC 364 30 100.0 36 .............................. CTGTACCGTCTGTGTTGTGCAGAATACTAAAGGTTG 298 30 100.0 37 .............................. AAAATAAGTTTGGTTCTAATATGGATCTTACAGCGTA 231 30 100.0 38 .............................. CCAATAAATTGTCTCTTTTGACTATCAACATCGAAACC 163 30 100.0 37 .............................. ATAGACTTTCAATCCAAAATTATGCTAAGAATTCTAT 96 30 100.0 36 .............................. TAGAAACAGAAATATCTATAGTTTTAGCTGCGGGGC 30 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 53 30 100.0 36 GATTTTAGACTACCTATAAGGAATTGAAAC # Left flank : TTTTCTGAACCATGATACCCTTGGTTGAACCTTAACATGAGATGTATTTAAATCGCAGCATCCCTATGTTTGCATCTATAAGTTTATTAGTTGAACCTTAACATGAGATGTATTTAAATTTCCTGAAATTATCAACTAATCTCAATATGTTTCCACGTTGAACCTTAACATGAGATGTATTTAAATAAACTTTGGTATATTTGACAATTTAAAAGTTGTTGAGTTGAACCTTAACATGAGATGTATTTAAATATTTTCTCCCTCCTTCTTTGTAACTCTCATACAATCGGCTGAACCTTAACATAAGATTAGTTTAAAAAATATTTTGGAATTATATTAAATTTTATGCCGTCGACCATGAATAGAGTAAAAATTACCGGAGGTCGACGATTTTTATGTTTGCAGTTAATTAGCCGCCTGAGATTAATTTCTAAAACTTTTGTAGAAATATTTCTGAATATTGCATTTTTCTAGATGCTGATGTATTCTATATTTGATGG # Right flank : C # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTTAGACTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 8034-3669 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXJK01000114.1 Clostridium sp. HV4-5-A1G NODE_114_length_10245_cov_297.194, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 8033 30 100.0 36 .............................. CCTTTCCTGCCAACCTGGTAAATGTAAGTGCCAACA 7967 30 100.0 36 .............................. CGTTTGTTCTCATTAGAATCTTTATAATTCGTTACA 7901 30 100.0 36 .............................. AAGAAAATTTTAGATATATAAGGAGGAAATAAAAAT 7835 30 100.0 34 .............................. TACTAAAGGAATTCCCAATAAACATCAAGATAAA 7771 30 100.0 35 .............................. AAATCAAATTCATATTCTTTACTTTCAGTACTTTC 7706 30 100.0 36 .............................. AAATAACTTTCAGTTATCGGCACTGGCACTGGCACT 7640 30 100.0 36 .............................. AAATTGCATACTTTTTCTTGTTGCCTCGTTATCTCC 7574 30 100.0 36 .............................. GGTAACTGCATTCGTAACATTCCCCTGGGTACTAAC 7508 30 100.0 36 .............................. TGTAAATTATATAATGAATAAAATATTTCATAAAAG 7442 30 100.0 34 .............................. TAGCAGATGAAAATAATTTATATCTGATGAAGAA 7378 30 100.0 36 .............................. GGGTTCTTCTTAATTTCCAATATTCTAAACTTCAAA 7312 30 100.0 36 .............................. TTATTCAATCTCTCTATCGTGTGGCTGCCATATCTC 7246 30 100.0 36 .............................. CCTTTGAAGTGAATTCATCCCATATTCCCATTGTCC 7180 30 100.0 36 .............................. TATTCATATTTTTGTGTCCTTGCTGCTTGCATGGTG 7114 30 100.0 36 .............................. AATTGTGCTGAACCTCTATATTGTCTAAATAAGTCC 7048 30 100.0 36 .............................. GTAATCCTACAGCAGCACCCAATATCTCTCCCCACC 6982 30 100.0 36 .............................. GAAAAATAATTTAAAGGAGATTTAAGCATGAATACA 6916 30 100.0 35 .............................. ATACCGAAGTTGGAGAAGGCCTGGCCATTGCGGCA 6851 30 100.0 36 .............................. ACAAACAAAAGCTGGCAATTCTGAAACAGTTGGAGC 6785 30 100.0 34 .............................. CTGCCGGGGCTCATTTAGTCGGTTGGTCTATTCA 6721 30 100.0 36 .............................. TTGCTATCGTTGTGATATTTTTGGTATTTGACTATT 6655 30 100.0 36 .............................. AAAAAGACAAGGGAATTGAAGATGAAGGAGTACGCA 6589 30 100.0 36 .............................. GTGGTCCAGTTCCCGTTCATGGCGGAAATAAATCCA 6523 30 100.0 36 .............................. CTAAACCATATACATAATCAGTCCATAAGCTGTTTT 6457 30 100.0 36 .............................. TGAGGTTCCTTATTTCAAAATGGCACAATGATTTAA 6391 30 100.0 36 .............................. TTTACATAAAAGTCTACTCTTATTCTCATAAAGTCC 6325 30 100.0 36 .............................. GTAGAATCACTTTCCTTCACAGCGTCTTCTACAGCT 6259 30 100.0 36 .............................. CCAAATGGCAAAAATCCAAAAAGGTAATAAAAGAGC 6193 30 100.0 36 .............................. GGCTGTAAGTTTTACCAACCAATTTATAAACTATGT 6127 30 100.0 36 .............................. TTCTCTTTTAATAGTTCTTTTATTTTCATATTATAA 6061 30 100.0 35 .............................. ATGTCTATGGTCAATATCCCAAACAAGGCATCTGC 5996 30 100.0 36 .............................. TCTTTAATTTTACTGTTATCAATGGTTTCATCTGTG 5930 30 100.0 36 .............................. TCCTCATCATCACTTATAACATTTTCCGTAGTCAGT 5864 30 100.0 36 .............................. ACGCTAAAAGTACAGGGGAAATATCTTTGAATGTAG 5798 30 100.0 35 .............................. TGTTTTATATAACCTCCTCTATATCCTTTGAATTT 5733 30 100.0 36 .............................. TATTGCTTTCCCTCCCAACTCTTTTTTCTGCTGTAG 5667 30 100.0 36 .............................. CGATATATTGGGTAAGGAGATGATATTATGAAAAAG 5601 30 100.0 36 .............................. CCTATTTAATTATACTAAAAAAGAGCACCTTAAGTA 5535 30 100.0 34 .............................. TAGTTGAACATAGGATAATTATTCCCATATTCGC 5471 30 100.0 35 .............................. GCACTAAACCTTTTATATCTTCTATGTTTATAGGT 5406 30 100.0 36 .............................. AGCACAGCCGACAACAATTAATTTAAATATGCAGCT 5340 30 100.0 36 .............................. GAAGTATACATTAGCACTATCTCTATTGTCCTTAGC 5274 30 100.0 36 .............................. TACATATGATACCATCTCCTTTACCCGATATATCGT 5208 30 100.0 35 .............................. GATACAATTTCTACGGAAAGATTAGTTGTACCATT 5143 30 100.0 36 .............................. ATAACGACAATACGAGCACCGTATGGTGAAAATGAG 5077 30 100.0 35 .............................. TAACTACAACTTTTAGAAGAAGCAAATTTGAGTTT 5012 30 100.0 35 .............................. GTATAAAATACTTCTGTTGTAGTTTTGCCTTGCTT 4947 30 100.0 34 .............................. ATCGCCACTTCTGGGCTTGTTTTAAGGCTTCATG 4883 30 100.0 34 .............................. TTTATCAGTATCAGTTTTCCAGCATCTACATCAG 4819 30 100.0 36 .............................. ATACAAACGGTACACTTCCAGAAAAGATGGAAGAAA 4753 30 100.0 34 .............................. GTATAAATGTGAAAAAGAAAAGGAGGAATTATAA 4689 30 100.0 36 .............................. AAAGTGTTAAAGATGATATAGACCAAAGATGCTTTT 4623 30 100.0 36 .............................. TTTTCTATATTACTTTCAAATGTCCAACCTGTGCCC 4557 30 100.0 35 .............................. TCATCTTTTACTATTACGGCACCATATTTCCTGCG 4492 30 100.0 35 .............................. TACCAGGATAATTCTTTATTACAGTTTATAACCTT 4427 30 100.0 36 .............................. GCCTAAAGGTAAAACAGCCATATATGGGCTGTATAT 4361 30 100.0 36 .............................. GGTTCTCTTTTATGCTGTCCTTCTATAAGAGTATTC 4295 30 100.0 35 .............................. TTGTCAGACCAATTGTAAGCGAAATTCCTTGGCAA 4230 30 100.0 36 .............................. ATAGCACTTCTAAATAGCTCCTTATCTTCTTCCTTC 4164 30 100.0 36 .............................. TTATCTACCTGTAGGAAGTTTCAAAGGGCAGAAAAG 4098 30 100.0 36 .............................. TATTTTGCCCTGTATTCTATGCTGTAGTTAAAGCCT 4032 30 100.0 38 .............................. AGTATATAGCCACTTTTTTCTGAACCATGATACCCTTG 3964 30 100.0 36 .............................. CGCAGCATCCCTATGTTTGCATCTATAAGTTTATTA 3898 30 100.0 37 .............................. TTCCTGAAATTATCAACTAATCTCAATATGTTTCCAC 3831 30 100.0 36 .............................. AAACTTTGGTATATTTGACAATTTAAAAGTTGTTGA 3765 30 100.0 37 .............................. ATTTTCTCCCTCCTTCTTTGTAACTCTCATACAATCG 3698 29 86.7 0 .C.............A....-........A | G [3675] ========== ====== ====== ====== ============================== ====================================== ================== 67 30 99.8 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : TTCCATCAAATTTATTTAATTTTTCATAGGCAGTTAAAAAAGTCTGCTGAGCTATATCTTCTGCATCAAAATAATTTTTTGTAAAAGAAAAACAGATGGTAATGACTAGACCTTCATATTGTTTAATATATTTTTCAAATTGATTTTCTTGAATAATCATCACCGCCTTTTTTAGCCTTACAATAATACAACGATTTATAAATAAAAAACACTTCAACAATTCAATTTTAACGTAAAATATTTTTGATAATCTATAATTTTTATAATACCCATTTTATAATTCAAGTACAAATTATAATCTTCATTTGATTAGACATCTTCTGTTTTCCAACCTACAAATAATAAGAAATTATTGCTAGCCCTTAGATTACAACGCCTCCATAAATCTTGTACTATTTATTTGTCTATAATAAAAATCGACTGGAAAAGTTTCGTTAAAATCCTTTATTTATAGTACTTCAAAGGATATAATAGAAATGTAAAATGACTATTTTACACAG # Right flank : AATATTTTGGAATTATATTAAATTTTATGCCGTCGACCATGAATAGAGTAAAAATTACCGGAGGTCGACGATTTTTATGTTTGCAGTTAATTAGCCGCCTGAGATTAATTTCTAAAACTTTTGTAGAAATATTTCTGAATATTGCATTTTTCTAGATGCTGATGTATTCTATATTTGATGGGATTTTAGACTACCTATAAGGAATTGAAACCTTTTTATAGGAGTTGTAATATGCTGGTTTATATTAGGATTTTAGACTACCTATAAGGAATTGAAACGCACTTGCAAATGCACAAATGAATTTAGATAAAGCTTGATTTTAGACTACCTATAAGGAATTGAAACTTGCCTTTTTTAATTCCATACATTACAGAGCCAGCCGATTTTAGACTACCTATAAGGAATTGAAACGCTTTTCCCCTGCCCCTATTTTGAGGTGGGGATATTTGATTTTAGACTACCTATAAGGAATTGAAACACCCTTGAGGAACAGAATAAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 422-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXJK01000264.1 Clostridium sp. HV4-5-A1G NODE_287_length_421_cov_461.91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 421 29 100.0 37 ............................. ATCCATCTGGCAGTGCTATGACTCCCTTGTCGTCCCT 355 29 100.0 37 ............................. ATTGATGGGGTATCTAAAACATTTGTGGCTAAATTAA 289 29 100.0 37 ............................. AAGGCTATTTGTAATGGAACATAGAAGCTACTTCCCT 223 29 100.0 36 ............................. TTGAAAATCAAGAGTTGAATGACAGGCAAAAATTAT 158 29 100.0 36 ............................. TTAGCCTTTGTACTATATCAATTTGAAGGGGACAAA 93 29 100.0 36 ............................. TATTAAAAGATTCAAGTAAGGTAGATGGGACACTTG 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 99.5 37 GTTTTAGAATACCTATAAGGAATTGAAAC # Left flank : | # Right flank : A # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAATACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 470-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXJK01000120.1 Clostridium sp. HV4-5-A1G NODE_120_length_9455_cov_476.092, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 469 29 100.0 38 ............................. TAATATACTCATCACCTTCTATATTAGAGTATATTTTA 402 29 100.0 35 ............................. CACATTTCTATATAATACTCTATCCCTACATCTGG 338 29 100.0 38 ............................. CTCTGTGCTCCGCTGTTTCCTATACCTGCTGCCAGTTC 271 29 100.0 38 ............................. TTGAATATCAGCCTTACCATTACTTCTGTATTTAGCTG 204 29 100.0 35 ............................. CCCTTAGCCTAGAAAATCAATTACATCAAGTTTCA 140 29 100.0 34 ............................. CAGAAAAACAAGCAGGAAAACTGATTAATATCCA 77 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 100.0 36 GTTTTAGAATACCTATAAGGAATTGAAAC # Left flank : CCGTATAGTGGTTTTGTTGCGAGGTGGTAATTGGTGTTTGTAATACTTGTCTATGATTTTGGAGAAAAACGTGTCGGCCGTGCTCTTAAAACATGTAGAAAATATTTAACCTGGGTTCAAAATTCTGTTTTTGAAGGAGACATAAGCATGGCTAATTTAAAGAAATTAAAGTGCCAGCTTTCTGATATCATGGTAAACAGTGAGGATTCAGTGATAATATATACCTTTAAAAGTACCAGATATTCTAATAGGGAAGTTCTTGGAGTGTCGAAAAATCAACAGGATATATTTTTATGAAATGGCCTGTTTAATTTTCAAAAACATTTTAGGATTATCTTAATTTTTTTGTCGTCGACCCTGAATAGAGTAAAAATTACCGAGGGTCGACAATTTTTATGCCTGCAGTTAATTGGCGGGTTAAGATTGATTTTTGAAACTATTGTAGAAATTTTCCTGGATATTGCAATTTTGGACAAGCTGATGTATTCTTTATTTGATGG # Right flank : CATCCATCTGGCAGTGCTATGACTCCCTTGTCGTCCCTGTTTTAGAATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAATACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 51-997 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXJK01000065.1 Clostridium sp. HV4-5-A1G NODE_65_length_20295_cov_634.91, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 51 28 100.0 38 ............................ TGCAATAAATCTTTTGTTATACGTAAAATCAAATTCGG 117 28 100.0 37 ............................ TTAAGAGGCTTGCAGGCTCATTATGTGGCAAGATTGT 181 28 100.0 39 ............................ TTATATCGTCTTGTATCATATCCTCTGCTTCTACTATGT 247 28 100.0 37 ............................ TTTTGCTAGAAAGGAGTTTTAAATGTTCGCGGAAAGG 312 28 100.0 36 ............................ TAAATACTGATATCTTTCTGCAAAGAGTAAGCTTTA 377 28 100.0 38 ............................ CATTTTCCATAGCCACCCATGATTCTTTTGTTCCTTGT 442 28 100.0 38 ............................ TTTGAAGAGAGTTATAAAAAGGTAAGATGCAGATACAG 508 28 100.0 37 ............................ ATATATATGGTATCGTGTTAAGAGAAACTTCTGTTGT 572 28 100.0 40 ............................ GGCTATCCAGATAAGTATTAGTTACTATGGTTGCGGGTGT 639 28 100.0 39 ............................ TTCCTTGTGCCTAACTCATTAGGCTTGTTGCCGTGGCGA 706 28 96.4 40 ...............G............ TTTGGCCGGGGGGTGTAAAAATTTTGAAAAATAATTTTGA 774 28 96.4 37 ...............G............ TTGTTATAACCACATGCATACACAGTATTGTCATTGA 839 28 96.4 37 ...............G............ GTAAATGTAAGAAGTAAATTCTCTGCAGCAATTGTGA 904 28 96.4 38 ...............G............ TCCGAGTAATAGCCTTTAGACTGCCCTTTAAACCTAGA 970 28 78.6 0 .......T.......G....G.A.T..T | ========== ====== ====== ====== ============================ ======================================== ================== 15 28 97.6 38 TTTTAGAATACCTATAAGGAATTGAAAC # Left flank : AAGGAATTGAAACTATTAAAAGATTCAAGTAAGGTAGATGGGACACTTGGT # Right flank : TATCAAAAATACTTTTTTCTAGAAGTGTTGATATTACTTGCATTGTGGGCATGTCGGAATCTTGCATATGCCCGGCTGGTGACAAATTGGGGACAAAATTATTTACCTTCAAATATGTCCTTGAACTGGTCGAATTCCTGAACAACTTTGTTTTCCATTTTCTTCGTAACACGCAGATACGTGTCTTCTGTAACTTTTTCGGTTGAGTGTCCAAGTCTTTCCTGGATAGATTTTACGGTGGCACCATGTTCCAGGAGATACGTAGCACTTGTATGACGCAGGCCATGGAGTTTTACGTGGCGTATCTTATTCTTTTAAAAAAAATTCCCCACCCAGAGTAGGGCAGGGAATACATTAGATGTTTAGCTTCTGCTTTATTGCTTCCTGTAGTAACTGGGAAAAATTAATTTTATTTTCCTCAGCTTTATACTTTAGCCACTGCGGCATTGTCACGTTGGTGTTTACAGTTTTGTTGTTCATCTGAGCCCTCGCAAGCTTCA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAGAATACCTATAAGGAATTGAAAC # Alternate repeat : TTTTAGAATACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 3189-4005 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXJK01000065.1 Clostridium sp. HV4-5-A1G NODE_65_length_20295_cov_634.91, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3189 29 100.0 38 ............................. ATAATAAAAAAAATGACCTTAACAGGTCTTAAAAGGAG 3256 29 100.0 36 ............................. CAAGAACTATAGCAGAGAGCTTCAATATGTCGCATG 3321 29 100.0 37 ............................. TTATGCTTGCGCAGCTATTATAGGTTCTGAACATCTA 3387 29 100.0 37 ............................. CTATATTCAAGTATCCCATCAAGAGTTATATAACTGG 3453 29 100.0 37 ............................. CTCGTGGCAATATCAAATCAATGCTGCAGTAGGAAAT 3519 29 100.0 36 ............................. TAAAATTCAGTTTTTTACATATTGTTCGGGTTTATA 3584 29 100.0 37 ............................. GTTTAACAAAGTTATACCAATGACTTCCCATGTTAGG 3650 29 100.0 37 ............................. TCAAAAAGGCAAAATTAAAAATCGTTAGTTCCAGTAT 3716 29 100.0 36 ............................. CTTATAACCAGTTTAATACTGTAAGGTATAATTTTA 3781 29 100.0 35 ............................. TTGCAAATTAATTATTGCTCTGATATGTCATGACA 3845 29 100.0 37 ............................. ATATAATCCCCTTTCAATACTTAACCCTATTTATTCA 3911 29 100.0 35 ............................. CTAATTGTATAGGCGAGTATTAGCAATATAATACC 3975 29 93.1 0 ........................T...A | TG [3997] ========== ====== ====== ====== ============================= ====================================== ================== 13 29 99.5 37 ATTTTAGATTACCTATAAGGAATTGAAAC # Left flank : ATGGTTTTTTTTATATTTTTATGTAATTATCATGAAAAATATTGTAAATTTGGTTTCCAACCTAATTTATAAATGAAGACAGCAAAAACTGTTAATTCACAATGTATTATGATGCCTTTCTATATTTATTTCAGAAAACTAAAAATACCTGGAAAATTTTTAAAGGAACTCTTTATTTATGCGACTTTAAAGCATATAATAAAAAATGGCTGTTTTACATTGCTGAACCTTAACATAAGATGTATTTAAATCCTGCACCTGAGGATTTTGATTTTAAAGTGCAGAATGCTGAACCTCGACATGAGAGATTAGTTAAAAAATGTTTTAGAACTGTATTAAATTTTATGTTGTCGACCCTGAATAGAGTAAAAATTATCAGAGGTCGACGATTTTTACGTCTGCAGTTAATTAGCGGCCTGAGATTAGTTTTTTGAAATTCTTCTAAAGATTTTCCTGAATATTGCAATTTTGGACAAGCTGATGTATGCTTTATTTAATGG # Right flank : ATTAAAAGAAAGTTTGACCAAATTACCATGAAAATAATTAACAAATTACGAATAAAAATGACTGTTTTACATTGGCTGAACATTAACATGAGATGTATAATAAATCATGCTATTTCTAATATTATGAATAAATGTAAAAATAAATATGATATAATTAATTCATAGCTAATGTCTAAAATATGTTTTGAGTAAGGATGGATTTTGTCATGAATAGAGTTGAATTGTTAAATATAATTGAAAATGGAGAAAATTCATATATAGAATTTAAAGAGGAAGGCATAAAGGCGAAAGAATTGGCGGAAGAAATTGTAGCTTTTGCTAATAGTGAAGGCGGGACAATATTAATAGGTGTATCTGATGACGGTAAAATAAAGGGAATAACTGATAAAAACATAGAAGAGAAAATTATGAATGTGTGCAGAAATAATTGCATACCTAATATAATTCCTGTTTATGAGAGTGTGGAATTAGATGGATTAAGGATATCAGTAGTTAATATT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGATTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 3 15003-15621 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXJK01000065.1 Clostridium sp. HV4-5-A1G NODE_65_length_20295_cov_634.91, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 15003 30 100.0 36 .............................. TTTATTATTCCTTCCATATTTATACACCTCATTTAT 15069 30 100.0 36 .............................. AGTTTTTTTGCCAGTTTGTTAAGTTCATTCAAATTC 15135 30 100.0 36 .............................. AAGTTGCTACAATTAATGCTAATAAGGATAGAGCCA 15201 30 100.0 34 .............................. GTGACTTTATCTGGCTATTCTGCTAGTGAATTAG 15265 30 100.0 35 .............................. ACTTCAACATACACAGTTTTCATATTAGGATCTGG 15330 30 100.0 36 .............................. CTTATATTGGAAGGTTAATTATTAGCTGGCTTTGTT 15396 30 100.0 36 .............................. CAAAGAGGTCATTGCGGTAATAGACAGCAGGGGAGG 15462 30 96.7 35 .....................C........ GAAGTTGGACCTGACCCTGTTCCAGCGTTAGAACT 15527 30 100.0 36 .............................. TAAAGAAGTTCTTGTTCTGGTACGGGGTATTCCTCC 15593 29 96.7 0 .......................-...... | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 99.3 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : ATATATATTACATTTCAGATGGTGAAAAATATATAAAAGACGGCAAGTTCAACCAGGAGATATTCATTGGACAAACTCCTGATGAGGCAAATTTGTTTATATAATTACGGGGTGATTCAGCATGAAAATAAACGGTACGCTCATAAATTATTATTTTCACTGCAAGAGGCAGTGCTGGCTTCATGGAAGCAGAATCAATATGGAGGACAATAGTGAGGATGTTCACATAGGAAAGATAATTCATGAATTAAAATCCGAAGGAAAAAAGAATTCGGAAATATCCATAGACAATGTGAAAATAGATAAAATCACAAAAGATTATCTGGTAGAGATAAAAAAATCTGATGCAGATATAGAAGCTGTGAAATGGCAGGTGTTGTTCTATCTCAGCTTGTTGAAAAGCAAGGGAATTAATAGAGAGGGAAAAATTGAATTTCAGGAAAAAAATAAGGATGTATTTAAATTTGAAAATCTTGCTTTTTTAAGGCATTTAGGTTTTC # Right flank : TAATAATTGATAGTACAGAAAATCCGGGATTACCAATCCATTTATACGACCCTTGTTTAGGATAACTGTAGTAGTATTTGTCACAGTTATAGCATCAAAATTGAATATGAATTGTACTGTAGTTTCAGTTGTGGGGATATCGTTAGTAATATTATATAATCTAGTAAGGTTTTGTTGTAAATGGAAAGAAAATCAAGTCGGAATAATGTACTAAAATAATTAGCTAAGAAATATTAGTAATCCATAACTGGTTGGCATACCATCAAAAAATAGTAACCCATTGCATTTAAGCATACTAGTAGAATAAAGTAAACCAGAATTAATGAGTGTGTTATGGATGGAAAGTAATCAAAGCTGTATAGTATTACTTGGCAGAATAATAATCTAAACTTCTAGTATCAAGTAAAGGATTTGTTGTGAATGGCAATCGGAGAAATAAGTTTATTAAGATGACATCAGAAGAGTTTAATACTTGCGTAGGGTTTGCCCTGCACAATGGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 8783-5096 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXJK01000017.1 Clostridium sp. HV4-5-A1G NODE_17_length_47174_cov_751.555, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 8782 30 100.0 38 .............................. TATGGAAAAGGGCATAGCCTAGAGGCTACACCCTTTCT 8714 30 100.0 37 .............................. CTCGATCAATGGGGTTAGAAATAGGTGAAAACTTGCA 8647 30 100.0 38 .............................. AGTTCAAAACATGGCTGCTTCTTATTTTGCGAATTGAT 8579 30 100.0 37 .............................. TAAAACAGTTTATCCCTGTGGTATGTGTTTCAGCTAT 8512 30 100.0 37 .............................. CCCCAATGTAGCCAAAACAATAGACTATAATGCTCAA 8445 30 100.0 36 .............................. TATTCTAATTGCCTCCTAAATTCATACCAACTTACT 8379 30 100.0 37 .............................. ATCTTTAAATTATAATTCTGTTTCTTTTTTAGGAACT 8312 30 100.0 38 .............................. ATCCATCATCTATTATTTCTATAAGCCCATTTTCTATA 8244 30 100.0 38 .............................. TCAATTTCCTTATTATCCTACAAAATTTAATTCTATCT 8176 30 100.0 37 .............................. AATATTGTATTGAAACCATAGAAGAAATCATTTTTCC 8109 30 100.0 37 .............................. TCAAATAGAAGTTGTATAACTCTCATTTTCAATTACA 8042 30 100.0 37 .............................. TTACTTACATTCACCAACATAAAAGGTGGCGTATTTT 7975 30 100.0 36 .............................. TATAAATCCTACATGGAGAGGATTGTTTGAATTTAG 7909 30 100.0 36 .............................. ACCTCTGCATCAGCCTCAATGATATTGCTATCATCT 7843 30 100.0 37 .............................. TTATGCACCTCTCATTGTAAAAGAGGATGGGAAATAC 7776 30 100.0 37 .............................. TAAGTTTGACTTTGATAAGAACCAATTTGTAATTAAA 7709 30 100.0 37 .............................. TCTAAAATTAAATAGATTAAGGAAGGAAGGGAAAATA 7642 30 100.0 36 .............................. TAAATTGATATCTAGTTAAATGTTTTGCAGTCTCTT 7576 30 100.0 35 .............................. CTGCTTATTGCGGTATATTGTCCATAAATGGGATA 7511 30 100.0 36 .............................. TTTCCCTGTTCTCAGAGAAAGCTTCACCGTATTCAT 7445 30 100.0 36 .............................. TGGGAGTGGTTTTGGTTATGTTAGATTGGCTTGTCA 7379 30 100.0 35 .............................. TTTGTATAAAGTTGACGATCAAAATTGAAAACTAT 7314 30 100.0 35 .............................. CCCACTGTTTTTTATAAAAAATTATTCAGCACAGG 7249 30 100.0 37 .............................. ATACCTAACTTTTTAGTTACTTCTCTTTCCAATTTTT 7182 30 100.0 36 .............................. TTTTTATGCTTGAAAAGAGGTGAGAACAATTACAAA 7116 30 100.0 36 .............................. CTTTTAGAACCATAACGGTCACATTCAATCATCTGC 7050 30 100.0 37 .............................. TTTGTTTTTCCCTTTTCTATCAAATCTTCCACATTTA 6983 30 100.0 37 .............................. AAAGTTGTTCCATACTTTTGCCTCCTTTCTTGTTTTT 6916 30 100.0 36 .............................. TTCCATTCCATATAGGCCTTTCTACCGTAGCATCTG 6850 30 100.0 36 .............................. TCATGATCATCCAGAATTATATCTGCCGGGACCCCT 6784 30 100.0 37 .............................. TTATGCAGGATTATTTAGACCATATAGACATAACCGA 6717 30 100.0 35 .............................. CAGGATCTTCTTCTCCACCTTTTATATGCCCCCAC 6652 30 100.0 35 .............................. AAATATACTCTTCCATCTTCACAATAAATTTCATC 6587 30 100.0 37 .............................. TCTTTAGCCTTACGATAAAACTCTTTTGATACTTCAA 6520 30 100.0 36 .............................. TCATTATCTCTCATTGGAATTAAAATATTATACAAA 6454 30 100.0 38 .............................. AAATATGGGCTTAAGGGTTTATATCGAGACGGGAGAAT 6386 30 100.0 38 .............................. TCCGGCAAAAAACAAGGTACAGCAACACAATATCGTCC 6318 30 100.0 32 .............................. TTACAAAGTTTAAAATTGGATTTTGTAGATTT 6256 30 100.0 35 .............................. CTTCATCTCCCTCAAAGATCCTCTAACCCTTTTAG 6191 30 100.0 36 .............................. CTAAATCCCCAACCGAGAACCTGCCACATCTGTCAA 6125 30 100.0 39 .............................. TGATTTAATAGATTTAAGAGAAGAAGTAAAACTTATACA 6056 30 100.0 36 .............................. CTTAATATGTTTTTCATATCGTTATCAGATATTGTA 5990 30 100.0 36 .............................. CATATAATGCAAATTTATTATTATCATCTTGAAACT 5924 30 100.0 35 .............................. CTTTCTCTCCAGAATCAATAATTTCATCTAACAAA 5859 30 100.0 36 .............................. TTGCATAATTCATCATATCATCTTGCAAATTGTTTA 5793 30 100.0 37 .............................. TTAATTCCCTTTATAAACGTTAAGTAGTCCCATATAC 5726 30 100.0 37 .............................. TCTATTTCAGTTTTTAAACCTTCTATATGCTCTATAT 5659 30 100.0 37 .............................. ATATCAAAGAATACTGTTTTTTTTCTTGTATCCATAA 5592 29 96.7 35 .....................-........ ATATCTGCTAATATAAAAGCAAATACCAGTATATT 5528 30 100.0 37 .............................. CTGAAAATCCTAATTTGAAGTTTGAAATGCTAGATAA 5461 30 100.0 38 .............................. TGGATATAGGCAACAAGAAATTGGGGATATGATGGGAC 5393 30 100.0 36 .............................. CTAAAATAAAGGTATCAGACATACAAGGTGTAATTG 5327 30 100.0 39 .............................. GTATCTCTATTCCTTTTATTTTTCTTGATCCACACGAAA 5258 30 100.0 36 .............................. TAAATGTTAAATACTCCCACAGACTCATATACATAG 5192 30 96.7 36 .............................C TGTAAAGAACTATACAAAGACGGTATAGAAACAGGA 5126 30 80.0 0 .GC......A..T...G............C | C [5108] ========== ====== ====== ====== ============================== ======================================= ================== 56 30 99.5 37 GATTTTAGATTACCTATGAGGAATTGAAAT # Left flank : AAGTTTTTTATGTTTTTGCACAATTATTCTGCAAAATATTGTAGACTTATTTTCCAACCTAATTTATAAATAAAAACAGCAAAAATCGTTGACTTACAACGTTTTATGCTGCTTTTTTCATAGTTATTCCAGAAAACTAAAAATGTCTGGAAAATTTTCAGAGAAATTCTTTATTTATGCGGCTTTAAGGCATATAATAAAAATAAAGAATGGCTATTTTACGACGCTGAACCATAACATGAGATGTATTTAAATTTTGGCGCAGCAGGATATATCGGCTATGAGGGAGTGCTGAACCTTAACATGAGATTAATTAAAAAATGTTTTAGATCTGTATTAAATTTTATGTTGTCGACCCTAAATAGAGTAAAAATTACCGGAGGTCGACAATTTTTATGTTTCCAGTTAATTTGCGGCCTGAGATTGATTTTTGAAATTCTTCCATAGATTTTCCTGGATATTGCAATTTTGGACAAGCTGATGTATTCTATACTCGATGA # Right flank : CTTATCGGTTGAAAGACATAATTGTATTTATGACTGACGTTTTAGATTATTGCTTTATAATGAAAGGTTACAAAAAGTTAATTGATACATTTGAAAGATTTCTTAAGGATATGGCTTGTAGTGTGATAGGAAAGTTGATAAAAAGTGAGTAAAAAAGAATATTAAAAGTTATGGAAAACTTGGATAAAAAATATGACGGGCTTGGAATAATGAAACTATGAATGAAGTTGAATTTTAACAATTAATTTGATGTTTTAATTGAGTGTTTAAAATGTTTTACATTATTATATAGTATATGTATAAGAAGTCGTTATGGTTTTAAATGATTAAATTATTTTTAGTTTAAAAATGCACTGCACTGCTCGGCGAAGGGTGTATTTTTAATTTTTTGAATGATTATTTTCGTCATCAACAGTGATGAAAATCTCATTATTATCCTTAAAATTATTTTTACGTTTAAGTATAGCTTTTTCCTTTAAATATGTGAGTATAGCAAAAAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTTAGATTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 14341-11515 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXJK01000017.1 Clostridium sp. HV4-5-A1G NODE_17_length_47174_cov_751.555, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 14340 30 100.0 37 .............................. TCCATCACTTTGTAATCAGATTTTAGTTCCTCTCCTA 14273 30 100.0 36 .............................. CTGGATCTTCTTTCCTCATAGTGGTTATTGCAACTC 14207 30 100.0 38 .............................. ACAGTTTTGTTCAGAAATACGAATAAGGCATATTTACA 14139 30 100.0 35 .............................. CTAATTTATGATTATGTTGCATATTCTTCACTTGT 14074 30 100.0 36 .............................. ACAGGTTGGAAGAAATAGAGTATTGTAGTGAAAAAA 14008 30 100.0 38 .............................. ATCTGACTATTACCGATCATTGTTTTTAAATCGTCTTT 13940 30 100.0 35 .............................. TTAAATATAAAATAGTAAATGATACTGCATATCTT 13875 30 100.0 37 .............................. TGATGTAGAAGAATTAAATCAAAAATCAAAGGAGTGT 13808 30 100.0 37 .............................. CTTCAAGAAAAACGAAATGATTCTGACCAGCAATGGC 13741 30 100.0 37 .............................. ACGTTTATAAAGGGAATTAATAATGCCCCAAAAGCTT 13674 30 100.0 37 .............................. TACAAAAACCATTTTTCTTTTTTTCTATTCTTGTAGT 13607 30 100.0 35 .............................. ACAAGTTTGTTCCATAATTCAATTATGTCCGGACA 13542 30 100.0 37 .............................. AAATTCATCCTGTTTTCTAAAATTGGTATAGCCCATG 13475 30 100.0 37 .............................. ATCTATTTTTAATTCTTCTATGTCTCTGATATATTCT 13408 30 100.0 38 .............................. TTTCAAAATGGCACAATGATTTAAGCGCTAACCTCATG 13340 30 100.0 37 .............................. AAGGAAACACCAAAGGGAAGGCGCAAAATGCCCAGGG 13273 30 100.0 37 .............................. TTTTTATAAGATTTAAATTTAGGATGCTTATCTAAAT 13206 30 100.0 36 .............................. TTTGCTTACCAAATTTTATTTTCTTTGCATCTTTTA 13140 30 100.0 38 .............................. TTAAAAAGGCAAAAATATATCGCCTCGCCCTTACCGCC 13072 30 100.0 36 .............................. ATCTCTATTATCTGACAATTCATAGTCAGCCCCCAC 13006 30 100.0 37 .............................. TCTGCATCATACAATACTTCACCTAAGTTGCCTTTCT 12939 30 100.0 36 .............................. TTAAATACATCTTGATATGTTTGTACTTTGCTCTTT 12873 30 100.0 38 .............................. CCTCCTTCTTTTCGTATTTAACATAAGCCTATTAGATA 12805 30 100.0 37 .............................. ATAAAAAGGAGTGTATTATTGTGAAAAATGAAAAAAG 12738 30 100.0 39 .............................. TACTTTATGTTTATATATTGTCTTACCTTTCTCCATTCA 12669 30 100.0 33 .............................. CTAATAGCCTTATATTGGGAACGTATATAGCCC 12606 30 100.0 36 .............................. TTAAAATCTTTACAAAGTGAGATATAATAATATTAG 12540 30 100.0 36 .............................. CCATTTGGCAATAATTTCATATGTTCTTCCATATCT 12474 30 100.0 36 .............................. TTATTTTATTAATACACTAACTATAGAACTGCTGCG 12408 30 100.0 36 .............................. ATGGTTGCCCTGTAATTGCGAGTGCCGCAGACAACC 12342 30 100.0 36 .............................. TTTTTATAACGTGAAAATAGCAGTATTTTGATGGGA 12276 30 100.0 36 .............................. TAAAACTATCTCCTCTATAAGCATTTGATAGAGCAG 12210 30 100.0 38 .............................. TCAATATGAAGGGATAGAAAGTGCTTACGGTGATGAAG 12142 30 100.0 35 .............................. ATATTTTTTCTGGTTCTTCTTTAAAACATATAGAA 12077 30 100.0 36 .............................. TCCAACTGTCTTCCAATAGATGCATATACTTTATCA 12011 30 100.0 36 .............................. CCGTATCCAGCATCTTGTTCGTGCTCTATTCCTAAT 11945 30 100.0 38 .............................. ACTTGTACACTAGGTATACTGGGAACACTGCCCCCAAA 11877 30 100.0 35 .............................. AACGAAGGTCGAATAAGGTCAGACAAGGAGCGAGC 11812 30 100.0 36 .............................. TATGATGATGCTAATGAACAAATGCAGGAAGTTTAC 11746 30 100.0 35 .............................. TTAAATAAGCATTTTGTTGCTCTGTTTGATATTTA 11681 30 96.7 37 .A............................ CTTCAAGTGCCTCTTTGACCTTATCCAGAGTACCCTT 11614 30 96.7 38 .A............................ TCTCCTTGGTGGCACTGGCGTTGTAAAAGACAATGCAT 11546 30 86.7 0 .A.....................A.A...T | AA [11520] ========== ====== ====== ====== ============================== ======================================= ================== 43 30 99.5 37 GTTTTTAGATTACCTATGAGGAATTGAAAC # Left flank : TGACCACCAAGGGATTTAAAAATTTACCGCCTGTTTTTAAAGGTATATGACAGAACTGGCCGTCAGTTGATTGATGGTCCTTATTTACAGCGGGATTTTGAACTTGTATAATTGTATTAAAAATTTAACTGAGGCTTGTTTTTATCCGAACGCTACCATTTGCTAATACTCTCCAGCTTCTCAAAGTGGGAGATAAGCACTGCTACGCGCCTGGGTTCTTCCCCTAAAGGATAACGTATTTTAAGTGCTAAAGGCACTAAGAATACTGTTAATAAAGTTCAGGTGGAGGAAAGTAATCCTTATTAGCAAACTCCATCTGAACCTAAGAATCACTTGAGGTAACTTTTGTTGTCGACCCTGAATAGAGTAAAAATTACCGGGGGTCGACAATTTTTATGTTTCCAGTTAACTTGCGACTTGAGATTGGTTTTTGAAATTCTTCCAAAAACTTTCTTAGATATTGCAATTTTGTACAAGCTGATGTATGCTTTGTTTGATTG # Right flank : GTTTGAAGGGAACTTATATGAGAAAACGGCATTATTATAAAGGTGAACCAATGGATATGTTACATACGGTAGCATTTAAAGAGATGCATACTATCATTTCCTGTATGGTAAAATTATCTTCACCTGTTAATGTCAACCGTCTTAAGAAAACTGTTGAACTTACAAGTGTGCAAATTCCCGAAATCTTATGTTATTATCAACCTGCAAAAAATCGATGGGTTTATTCATCAAAATTGAAGCACACAGTAGTTGTCCAATTGGGAGAAAATGATGATCCTCCGCAGCAGCCAATTGATTTTCTTAGAGATACCCAGCTTAAAATTTTTATAAAAAATATACCGGAACCTATGATTTACATAGTGATGAGTCATATATTCACAGATGGTTCGGGTTTTAAAGAATTTCTTTATTTACTGGCTAATAATTATAACCATAAAAAATTAATCTCGAATTTTCATAACCAGCGTTCAAGTGAATCTATTGTAAAAACACTGCTCGGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGATTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 3 23639-20614 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXJK01000017.1 Clostridium sp. HV4-5-A1G NODE_17_length_47174_cov_751.555, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 23638 30 100.0 35 .............................. TATAAAAAAGCCTCCTGACTTGGAACCTCATTATA 23573 30 100.0 37 .............................. TCATATTCTATAGAAGTTTCTTCTGACGGTGTAACAT 23506 30 100.0 37 .............................. ACATCTAATCCCATGTGATCTGCAAGCCAGTAGAAAC 23439 30 100.0 36 .............................. CCTTTCCTGTTCAGTGGGAACCCTTGCTTGCTTTTT 23373 30 100.0 39 .............................. TCCTTCCTAAGTCCCCAAACTTGTACAAAATCCAATGTG 23304 30 100.0 38 .............................. CCTTTTTCATCAAAATTCCTCCTTAATTGGTTATTTTA 23236 30 100.0 36 .............................. TGGAGCACAGAGCAGATGACTTGAAAAACTATATTT 23170 30 100.0 37 .............................. AGATAAATCCTCAAAAGGAAGTGTAAATAATGTTTTT 23103 30 100.0 35 .............................. AATCATGTTGTGAATTTATAAAACGGCATCTATAA 23038 30 100.0 38 .............................. TTGGGTTGGGATAAGGAAGAATAAAAATTTCATGAAAG 22970 30 100.0 38 .............................. GAATAAAGGTTTAACTAAAAAACCATTGCCGAGTGTTG 22902 30 100.0 36 .............................. TATAACACTCTGCACATAATAGAGGTTCATATCTCT 22836 30 100.0 38 .............................. TTCTTCTGGCATGGTGAAATACTTCTGGTCCATGCTTG 22768 30 100.0 36 .............................. ATTTCCCCTGTAACAGCCCTGTGTTAATATTACTTG 22702 30 100.0 36 .............................. GCGCGAATATGATGGTTACAGGCGGAATACCAGACA 22636 30 100.0 37 .............................. ATTCTATTTTCTTGTGAAGAAGTTTAAAAGCTGGTCT 22569 30 100.0 37 .............................. ATAAATCCAAATATAGTAACAGGAATAACCTCTGTAC 22502 30 100.0 37 .............................. TAGGGTGCGGCTAGAAAGGAGAAATAACGTACTGTAC 22435 30 100.0 37 .............................. TCGGTTCTTTGACGCTTACGCCGTATGTTAGATATCC 22368 30 100.0 36 .............................. TTTTCCACTAAACTTACATAACTATCCGATTTATTT 22302 30 100.0 34 .............................. GCATACTCAATCTCTACTTCTCCCCTGTGGTGAA 22238 30 100.0 38 .............................. ATGTTAGGGTTATCTGGTTGTGGAGACAGTGAAGAAAA 22170 30 100.0 35 .............................. CCTTGATACCTAATGGAACTATAGGAACTACTGTA 22105 30 100.0 39 .............................. TTCCCGAAGTTTTAGCTGTGGTAGATGGTGGAGAATTAG 22036 30 100.0 36 .............................. ATGAAAAAATAGCAAGCATAAAAGCGAAAATGGCCG 21970 30 100.0 38 .............................. CTGCTAATAAATACTGGGTTGCGTTACGCCGAAGGTTT 21902 30 100.0 38 .............................. TTCCAACGGAGGGGAATAGGTTCATTGTGGCAGATTTT 21834 30 100.0 38 .............................. TCATTTCGCGCAGATATATCAGAAATTAAAACATCAAT 21766 30 100.0 36 .............................. CTGCCAAATCCTGTATTTGTGCAGTTTCTACTTGTA 21700 30 100.0 37 .............................. GCTATTGGATTATATATATTGTCCAGCCCGGGCAGGT 21633 30 100.0 35 .............................. ATGTTGTTCCACTACCTGCAACAGGGTCTATAACT 21568 30 100.0 37 .............................. TTGTATCTAATGAAGGATTAATTGCCTCTCCATTTTT 21501 30 100.0 35 .............................. AACCTAATAATTCATCAGGAGTAACTTCCAGTGCT 21436 30 100.0 38 .............................. AACATTGCTGCGTAGTAGCTGTGACATTTCCTGTAGTC 21368 30 100.0 36 .............................. CTGGTAGCGCTCCCGCAAATTCCGATTCTATAGTTC 21302 30 100.0 37 .............................. TGCCATGCTCTATCCTTATCCAGCCGTTCAATAATCC 21235 30 100.0 35 .............................. TGAATTAAATCATCATATTGTCCTTTTAACCTCTT 21170 30 100.0 37 .............................. AACATTCTTTTACTCTGTTGCCACTGCTACTTAAATT 21103 30 100.0 36 .............................. ACCCCTAAAAAGAAACATGGTAAGGTAATTTGCATA 21037 30 100.0 36 .............................. CTGCTTTTGCCCTTTCTATTTCTTTCTGTAGCTTTT 20971 30 100.0 36 .............................. CTCAAGTTTCCACCACTGTCAGTAGTACCACCAAAA 20905 30 100.0 36 .............................. TTGAATATTTTGGTGGTACTGTGGTGCATTTAAGTT 20839 30 100.0 36 .............................. ACATCTTCCATCTTGAATATGTGTTCAATCATCTTT 20773 30 96.7 35 .................G............ GCAGATAATTCAGGGTGTTTTTCAACTTGATTGAT 20708 30 96.7 35 .................G............ AGTAATGTTGGTCCACCTTCCCAGTATGTTGTACC 20643 30 83.3 0 C.......AT.......T..........C. | ========== ====== ====== ====== ============================== ======================================= ================== 46 30 99.5 37 GATTTTAGGATACCTATAAGGAATTGAAAC # Left flank : TTACAACAAATTGCCCAGCGAAATAGCGAGGGTTGAACCTTAACATGAGATGTATTTAAATTCCCTCCTAGGCTTCTTTCTGCATTAGATATCTTTGTTGAACCTTAACATGAGATGTATTTAAATTAGCAAGTATCTTGGGGTCATTCCTGGCATTATAAGTTGAACCTTAACATGAGATGTATTTAAATTGTTCTTTATCAAATTTTTCTTCATGCCCATTATTGTTGAATCTTAACATGAGATGTATTTAAATCTGGGATTTCGACATATTCCCCGTCGCCCTTCTTGTTGAACCTTAACATGAGATTAGTTTAAAAAATGTTTTAGAATTATATTAAATTTTTATCGTCGACCCTGAATAGAGTAAAAGTTACCGGAGGTCGACGATTTTTATATTTGTAGTTAATTAGCCGCCTGAGATTAATTTTTAAAACTTTTGTAGGAATATTTCTGAATATTGCATTTTTCTAGATGCTGATGTATTCTATACTTGATGG # Right flank : CCAAATTACTAAAGTACAACAACTTGCAACATTGCGGATTTGGCCTATATTCGAATTGATGAACATATATGAGTTAGCTATAATAATCATATGGAGGAAATAAGAAATGTCAGGTAATGGTAAGAAGTATAATACAGAATTCAGAGCAGATGCTGTAAGGCTTGTAGTAGAAGAAGGTAGATTTGTAAACAGTGTGTCAAATGATTTAGGCATAAATGAGCAAACCTTGAAAAACTGGTTCAGACTCTTGGTTTTCAGCAGCACAAAATTTTGGAGTAAATGCTAGGGAGCTAATAGAGATATGTACATGGGCGCAAAATTCTGATATGTCGTATGTTTCGAATACTAGGAATTTTAGATTGCAATTAGATATAAGCTATTATAATAATTATACGACTGTTATGTTAGATTAGGAGAAACTAAAATGTATAAATTTCAATACAAAGATGGTGCTGAAAAGCAAAACATAATTGACCAAAACAAAGATAAAATATTAATTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTTAGGATACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.40,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 4 25952-23819 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXJK01000017.1 Clostridium sp. HV4-5-A1G NODE_17_length_47174_cov_751.555, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 25951 30 100.0 37 .............................. TATTTTCAACCCCTTTGGCATATGTCTTATTTCCCTG 25884 30 100.0 36 .............................. GATGATCGAGATCAGAAGCCTAGCAATGAAGAACCT 25818 30 100.0 36 .............................. AAAGAATAAGGACTCGAAAAAATATATCTACGTATG 25752 30 100.0 36 .............................. TAGTTTCATAGTCAAGCCCTACAGCTCCGCGAGCGT 25686 30 100.0 36 .............................. GACAATGGCTTAACTATAAGCGAGGCGAATTTGATT 25620 30 100.0 36 .............................. GGCTTTTATGATGGATGATAAAGTCGGAGATGAGGA 25554 30 100.0 35 .............................. GTAACGAATACAGTTTTATCCCATGCAGGGGGCTT 25489 30 100.0 37 .............................. CCGACGCCGAACTTATGGATGATACTCTGGATGTTAT 25422 30 100.0 34 .............................. GTTTGTCTGCTGTTCGCTTGGCTTCCTCAAGCAG 25358 30 100.0 37 .............................. ATGTGGATTGTGCCATATTGGCTTCCTTACATAACCT 25291 30 100.0 34 .............................. TTTAATTCGTGCCGTTCCCCACCATAGGCGGATT 25227 30 100.0 36 .............................. GGTATGCCAGATAGGATTGTTTTAATGCCACACGGT 25161 30 100.0 34 .............................. TTATTATCCCGAACTTCAAATTCTACTCCTTTAT 25097 30 100.0 35 .............................. AGGGATTTAATGGACTTTGACTGGTATTTTTATTT 25032 30 100.0 36 .............................. TGCTCAGGTAGATTTCTGATCCTGCCACCGTTAACT 24966 30 100.0 34 .............................. CCCCATTCCAATTCCAAACAATCTTCCAGGTCAG 24902 30 100.0 36 .............................. TAGGGTATAAATTTCATGCTATCACCTTCCTTCACT 24836 30 100.0 37 .............................. TGCTTAGTCTTAATCCTTTTCCACTCTTTCCAAAAGC 24769 30 100.0 38 .............................. GGGCAATATCGTTGACCTGCATTTATAATCTTCCCACA 24701 30 100.0 37 .............................. TAACCATTCAACTCCTTATATACATCCTTGTGTGGTC 24634 30 100.0 36 .............................. CAAGTTCTTCAGCTCTCCCCAGAATGTCAGCAATAT 24568 30 100.0 37 .............................. AGCTGTTAGGTGCTGGTGTTCCTGTAAGTCCCACTAT 24501 30 100.0 36 .............................. TATAGACCTGTTGAGAATTTACCTCCAGCATACCAG 24435 30 100.0 37 .............................. AGACTAGAACCAACGCCATCAATTACAGTTGCCAAAT 24368 30 100.0 35 .............................. AATACAAGGGCAAGACTGAGAGAATGGCGACATAC 24303 30 100.0 35 .............................. AATTATTAAGTGTTTGAGATGGTTTTTGACTTAAG 24238 30 100.0 35 .............................. TAACTATACACCTGCCTTTGCTCCTTCTCCTTCTT 24173 30 100.0 36 .............................. GAGCGTTACAACAAATTGCCCAGCGAAATAGCGAGG 24107 30 100.0 35 .............................. TCCCTCCTAGGCTTCTTTCTGCATTAGATATCTTT 24042 30 100.0 35 .............................. TAGCAAGTATCTTGGGGTCATTCCTGGCATTATAA 23977 30 100.0 35 .............................. TGTTCTTTATCAAATTTTTCTTCATGCCCATTATT 23912 30 96.7 34 ......T....................... CTGGGATTTCGACATATTCCCCGTCGCCCTTCTT 23848 29 93.3 0 ....................-........A | G [23825] ========== ====== ====== ====== ============================== ====================================== ================== 33 30 99.7 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : GTGAAACGGGTTGATGTAAAAGATGCTTATAAAATTATAAAAATATTGGATCCAGGCTTATCAAATGTGATTTTCCAATGTCAATGAGGATATTTTGACCCAGAGTCTGAGATTACACTCCACAGCATAAGTAAGGAAAACAGGAACCGTAGAAACTATAGGGATAACTTGGAAAATAAGAGAAACTAGAAACTACTGTTGGTAAAAAAATATTCCGTGGAGTCTGCTCTCTTTCCAGGAAACTCCAACTTCAAGCTTGAAGTACCTCTGGATGCAGCTAAGTGGTGATTAGTTTACTATAAGTAAACCACTTGTTGCAAAATGATTTCCAACCAAATTAAACTCTAAAAGTGTTTCAATGTTTTGAAATGGAATGGATTGAGATACCTGTTTTTATTTCTCTTAAAAAAATAAAAACAGCTGGAAAACTTTCGCCGAAATGCTTTATTTATGCGACTTTAAGTCCTATAATAAAAATAAAGAATGGCTATTTTACGTTA # Right flank : AATGTTTTAGAATTATATTAAATTTTTATCGTCGACCCTGAATAGAGTAAAAGTTACCGGAGGTCGACGATTTTTATATTTGTAGTTAATTAGCCGCCTGAGATTAATTTTTAAAACTTTTGTAGGAATATTTCTGAATATTGCATTTTTCTAGATGCTGATGTATTCTATACTTGATGGGATTTTAGGATACCTATAAGGAATTGAAACTATAAAAAAGCCTCCTGACTTGGAACCTCATTATAGATTTTAGGATACCTATAAGGAATTGAAACTCATATTCTATAGAAGTTTCTTCTGACGGTGTAACATGATTTTAGGATACCTATAAGGAATTGAAACACATCTAATCCCATGTGATCTGCAAGCCAGTAGAAACGATTTTAGGATACCTATAAGGAATTGAAACCCTTTCCTGTTCAGTGGGAACCCTTGCTTGCTTTTTGATTTTAGGATACCTATAAGGAATTGAAACTCCTTCCTAAGTCCCCAAACTTGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //