Array 1 141308-139733 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFHU010000002.1 Bacteroides fragilis strain FSDTA-HCK-B8 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 141307 35 100.0 34 ................................... TTTTTTTTGTTTCATTCTCAAATATCCTATAGAT 141238 35 100.0 36 ................................... ATCTGGTCTTTTATCTTGACCTGACGCTGTCTCCAG 141167 35 100.0 32 ................................... TTTAGGCAGAGTTTGTGTCGTAACAAGTTTGT 141100 35 100.0 36 ................................... ATGTTACTCGTCCAAGTTGAATATCTTCTTCATTCA 141029 35 100.0 36 ................................... ACCACAGCTGGTGTAAACACTTTGCGGTTTGAAGTT 140958 35 100.0 34 ................................... CGGTTGCATTGACTGGCGGGCATTTTTTACTGTA 140889 35 100.0 35 ................................... CTTTTGCGATACCGTAAATATCCGATAGGTCGGAT 140819 35 100.0 33 ................................... ACAATGGCTATGGCTAAAATGATTAATAATGCT 140751 35 100.0 36 ................................... GCATTTGCATTGTGGTGATCCACTTCTATCGAACCC 140680 35 100.0 37 ................................... GAACATAGGTGTTTTCTTGCTTCGCTGTCACAATCTT 140608 35 100.0 35 ................................... CCAATAGGTCAGGGGAATGTACATGTCATTTCTTT 140538 35 100.0 34 ................................... ATAGAAGTTCCAATCTGTCATGTCGTTTTGTTTT 140469 35 100.0 39 ................................... GAAAAGCAGACCGATGATATTACAGAAAAAATTTACTAT 140395 35 100.0 33 ................................... GATAAATTCTTCCGCATTAAATATTCACAATCT 140327 35 100.0 34 ................................... TCACAGACAAAGCACCCAACATATCATTAATCAT 140258 35 100.0 36 ................................... GCTTTCGATGCGTCCTTCAAATGAAATTTTGGTGAT 140187 35 100.0 35 ................................... AAAAACGGCTTGGCCAAGAGACATAACAAAACAAT 140117 35 97.1 36 ................A.................. GGCTTACATTGCTGTAAACCTTCAAATCCAATGTCT 140046 35 100.0 36 ................................... TTGAACGGAATAAATTCCATGTTCGCCAAATTTTCA 139975 35 100.0 35 ................................... CACTCTCCGTTGCTGTTAACGCGATAAAGTCCTCC 139905 35 100.0 34 ................................... ACATAAGCAGCATCAATTTCGCTACGACACATAA 139836 35 100.0 34 ................................... ATCGAGCCGCCTCGGTCAATCTTCGGAGTCTTAA 139767 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 23 35 99.9 35 ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC # Left flank : TTATATATCAACCTATACGAAAAAAGATAATTAAAACCGTCGAAATAGTCTAAACCTCTTGCGAAAATCAGAATTTGTTTAATTCATTGATTTTCTGCTTATTCTTTTAAATGAAAAATAATATATAATGTATAAAAGCTACGAAAGAACTAGCTTTTTTGTATATTAGTAAATCATTTGCGAAAAAAAACAAATAAGCAATTCGTTCTTTGACATAATACACTTATTATCTGATAATTATAAATATAAGATTAATCTTATTTTCGAAATAGGCTATAATATAACAAATGAAGCAGGCATTTGCGAATAATGAATCGATCATATCAAAGTGATAATCAATTAAATATCTCTATATTCTACAAATTATTTATTTAAATTACAGAAAAAAAGAGTACATTTGCGAAAATCAGTTCAACACTTCATCTATCTAACTGAATAATAAGTTATTATATATTTATACAGATAGAATACATATTTTATAATAATCTGATTATCAATAT # Right flank : CAATGCCCAGAAATACTGCAAACTTTCCTTATTAGCATGTAGATGTATTCCAATATAAAAATTTAACTACATTAAATAGAATAAGGGGAGAAGTTCAGACATAACGGCTTGGATAAGATCGTCATGGACTTCGGTATTGCTTTTAACATTGGGAAAATGATCAATAAGCAGGAAAAGAAGAAGAGAGGCAGAACTAATTTATTGGTAACTATTTTAATAAGCTGTGGAATAGCTTACCAAAAATACACAAAGGCGATAATACTACGGGGCTGTCCAAAAAGCAAAGTGCCCCCAAAAGTCGGATAGCCCCTTTTACCATTGTTTATTTCGGTGAAAAGCCTCATATTACCGTTGTGAAAAATTAACAGTAATAGTTAAGATAGTATTTAGAGAGTTAACCTCCAGCCAAAATGTTCTTTTCCGGTTCGTTTATCGGAAAAAATATCTCCCAACCACCTTGTTCGTGTTGTAAATTACATTGTAGATGCTTTGGATATTAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 329-2834 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFHU010000005.1 Bacteroides fragilis strain FSDTA-HCK-B8 Scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 329 47 93.6 29 ...A......A.............................A...... AGTTTTCGTAGCTTAGTTCATTCAGAATA 405 47 97.9 30 ........................................A...... GAAAATGTACCAAACAGCATTGATAAATGC 482 47 97.9 29 ........................................A...... AACGAGTTGATTGATCGTTTACTTTTATA 558 47 97.9 30 ........................................A...... AGAGCTATTAAGATATCCCGCAACGTATGA 635 47 100.0 29 ............................................... AATAACGTTAGTAGGCGTATACTGATAAG 711 47 100.0 30 ............................................... TTATTGAGTTATTTTGAGAAAACCATAGCT 788 47 100.0 30 ............................................... TATACACTGAGGGTTGTTTTTGACCCGGTT 865 47 100.0 30 ............................................... TTCCGCTTCACGGATTTCCTCTTCACGTAA 942 47 100.0 30 ............................................... AGAACTATTTTATCATCTATGAATTTCGTA 1019 47 100.0 30 ............................................... CAGCGTTGATCCGCTTTACACTCTCCTCAA 1096 47 100.0 30 ............................................... ATGGCACGTGCCTACGAGGAAAAGATACAA 1173 47 100.0 30 ............................................... TCCATTTCCTCACCTACCTTTAGATCGATA 1250 47 100.0 30 ............................................... TCCGTCTTTAGAATACCGTGCCCACAAAGA 1327 47 100.0 30 ............................................... CACGACGACTTCCGGGAATAAGAAAGACCT 1404 47 100.0 30 ............................................... TATGTTCCGGCTGTGTCCTGCAATAGACAA 1481 47 100.0 30 ............................................... TTGAATTGACAGTTGCAAAGCAATTGGTCT 1558 47 100.0 30 ............................................... GAAAAGAGCACAGAAGCAGCAAGAACGTAT 1635 47 100.0 30 ............................................... TCTCACCTGTATATCACCGGATGGCAGATA 1712 47 100.0 30 ............................................... AAGATCGGCAAGAAGTACACCGTTAACCCT 1789 47 100.0 30 ............................................... AGTAGTCATAAACTGCAAATCAGGGCCTGT 1866 47 100.0 30 ............................................... ATTTAACAACAGAACGACCATCAGGATAGA 1943 47 100.0 30 ............................................... CTTTCGGTTTAATGATAATGTAACCCATAT 2020 47 100.0 30 ............................................... CGGATTGACTTTAAACCATGAATAAGTAAG 2097 47 100.0 30 ............................................... CGGATTGACTTTAAACCATGAATAAGTAAG 2174 47 100.0 30 ............................................... GAAAGTACGCTTAGCCTGCTCAAACAAACT 2251 47 100.0 29 ............................................... GGGAGGCAGAATTTCCAATAGACAGGTAG 2327 47 100.0 30 ............................................... TCGTAATGGTGAGTATAAGGAGAAGAAGAG 2404 47 100.0 30 ............................................... TTCTCTTCATCGTTATAAGAATTAACACAT 2481 47 100.0 30 ............................................... TGACGAAAACACCACCATTGCCGTAGATAT 2558 47 100.0 30 ............................................... CGTATTTTGCAAAGAATCTGCCAATTGTTC 2635 47 100.0 30 ............................................... TGTGTCCTGCAGTAGATTATAGCACGCTGT 2712 47 100.0 29 ............................................... TTGATTTCTTTTTCCATTTCTGTATTTGT 2788 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 33 47 99.6 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGGAACAGC # Left flank : GTATCTGCAAAAAAAAGGATAAGTGCCGGACCGAAAGGGATAGTTGCGATTAGGGCAAGTATGGGGGCAGGGGATTTTAAAAGCAAGGTTGGGAGTGAAAGCAGGAGGAGTTTACTGCTAAAGACCATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGCG # Right flank : CAGATTTCACATAACATATTGATTTTCAATCAGTTAAGAGTAAATTAAAAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTGTTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGGCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGGAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //