Array 1 537583-536625 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVF010000001.1 Listeria booriae strain FSL L7-0979 NODE_1_length_870362_cov_39.953626, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 537582 30 100.0 36 .............................. GAAGTTGAACAGCTGCTTATTAATTCTCATGCAGAA 537516 30 100.0 36 .............................. AACTGAGATAGATAAAGAGATTGTCGAAACAAAAGA 537450 30 100.0 37 .............................. TGGGCTCTCCTAACTACATCACCATACTTGAATTCGT 537383 30 100.0 36 .............................. ACATTTTGACGATAAAGGAGAGCTTTGGTCAGCTAC 537317 30 100.0 36 .............................. GTGTTCTTTACCGATTCCGCTAAACTCTTATTAGTG 537251 30 100.0 36 .............................. TTACGATTCGGAATTCAAGTTGATGGCGGAAGAACT 537185 30 100.0 37 .............................. AACAATCGAAAAACAGAAAGATAGATGGATTTGCAGC 537118 30 100.0 37 .............................. ACTCGTTATGGCGCTAATAAGCGGATTAATTCAAATA 537051 30 100.0 36 .............................. TCAAGTTTGCCGCAGTTACATCTATGTCGTCACTGT 536985 30 100.0 36 .............................. GCTGGAAGAATTGTACTTATTAAAATGAGAGCCTTC 536919 30 100.0 36 .............................. AACGTAAGTATGATACTAAGCCGCGGCGTTCGTGCC 536853 30 100.0 36 .............................. TACTTCAACAAAATCCTTTAGTCGAATGTTTTCCAT 536787 30 100.0 37 .............................. ATCCTTTCCAAGATCGCCAATCTTCGCTTTCGTGTTG 536720 30 96.7 36 .................A............ TGGCATCAATTTCCGCTTGAATCACGTCGTACAATT 536654 30 96.7 0 .............C................ | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 99.6 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAGAGAGGGGATGGCTGATAAGTGGTGTTTGGTAAGGTGGGGACAAAAATCTGTCGACCGTCGGTAGTGTGGAATTTAGGGGGCATCGACAGATTTTTGTTAAGCATTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTCAATCGGGTACCT # Right flank : ATCCATTTCATGTAATCCTTTGCTTTATCTGCCGATTGTCTTTATCTAAATAATATGAATCCAGACTAGATTGCCCACAGAAGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCCGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAAGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 252736-251011 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVF010000002.1 Listeria booriae strain FSL L7-0979 NODE_2_length_566192_cov_43.439593, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 252735 30 100.0 36 .............................. ATAGTAGAAGGAGATATTGTCGTGGACCGGATGGTC 252669 30 100.0 36 .............................. AAGCAATTACCTGAAACATTTTTAGGGTATTCTTTC 252603 30 100.0 36 .............................. CAATGATGGCACGAGGTTTAATTTCTTTGACGTCCC 252537 30 100.0 34 .............................. TCTCTGGATGCATTACTGAACCAAAAAGACTTTT 252473 30 100.0 35 .............................. TTGGGATGAACATTTTTATAGATTATTCGTGTGCT 252408 30 100.0 36 .............................. TCGGATAACCACCCAAGCCAATCCGCGTATTTCTTT 252342 30 100.0 35 .............................. TTCGTATGCTAGGAGACTACCGAGGATTAACCGTA 252277 30 100.0 35 .............................. CCGATAATCATGTTAATAAATTTCGCCTTCGTTTC 252212 30 100.0 36 .............................. TTTTAATCCAGCCGCTTTTTTCCGAGCTTGGGCAAA 252146 30 100.0 34 .............................. CCACCAAACACATCCGGATGCTTCGCAAGTTGTA 252082 30 100.0 34 .............................. TTTGTAAAGCCTGTATTTGAAGCAAATAAAAAAC 252018 30 100.0 36 .............................. ATTTTAGACGATAAGCGTTGCACTCAAAATAGAAAA 251952 30 100.0 34 .............................. TTTATAGTGCATCGTCAGTAGTATTGTAGGCTTT 251888 30 100.0 35 .............................. ACGATTGCCCAGCGTCGGAGCTTATTCCAGCCAAA 251823 30 100.0 36 .............................. ATATTCAACGAGACACGTTATTCAGGAAGGTTAGGG 251757 30 100.0 34 .............................. CCCCATTTCAAATTGGTATAGGTGAACCTTTTGA 251693 30 100.0 34 .............................. AGCAGTAGATAACTTCTATCAAGCCTCCTCCCTA 251629 30 100.0 36 .............................. TCTATAGTATAAACTAGTAAGATAGTAAATATAATA 251563 30 100.0 35 .............................. GTCGAACTATATCCTAGTCCGCCTAAATTCCAACG 251498 30 100.0 35 .............................. TGGGAGTTATACTAAGTTTTTCTGTACCAGTTAGA 251433 30 100.0 36 .............................. TTGTATGGGAGACTGGGAACAACTGGAGCAGCGCGG 251367 30 100.0 35 .............................. TTTTTAACATAGGCGTTCTTACTCAACGACCGTGA 251302 30 100.0 36 .............................. CTTCTCGATTTCATCCGGCCACGTTTTCGAAGCAAC 251236 30 100.0 36 .............................. CTTCGCCCTGTCACTGTTGTTTCTGTTTCGCGTTTG 251170 30 100.0 35 .............................. AGTTGTTTTAAAGCATCTTCAAAACCATTCTTATT 251105 30 100.0 35 .............................. ACTGCAGATATCTTAGTGCAAATTGGCTGTTTCTT 251040 30 93.3 0 ...............G.A............ | ========== ====== ====== ====== ============================== ==================================== ================== 27 30 99.8 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATCTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGTAGAAATGAAAGGTGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACTTCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGAGGTACCT # Right flank : TCGCCTTTCCTCCTCATTTTTTACAAATCTGAATCAACTGTTTTTATCTAAAAATAAAAGATACTAATATAGTTCATATCGTGGTATACTAACCGCGAAGGGAATAAGGAGGCATTTTGTATTCTCCCTGACTATACTAAGGAATCGGAAGGAGATAATTACTTTGAATCACAAAACAGTAAAACTTATCACTCCTGTCATGGGACTCTCCCTGCTACTCTCAACTCTAGCTCCTGTTATTCCAGTGTCTGCGAACGAAACAAATGAAAGCGCTGTAGAAGAAGCCGCAAGCCAATACGCGTTAACAGATGTAGATATAGGTATAGCCAATCAGTATATTACGCTCAATGCAACAAGTAATAATTTTAGCGTCTCCCCCTCTATTTCAAATGTCCTTTCTAGTGAAAAAGTGAACATTATTAATGCATTCGTTGCTACTGCTAATACTTTTATAAAAACTGCCAAAATGGATATATCGATGCCCATTTACGCTATTGATC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 51295-50280 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVF010000008.1 Listeria booriae strain FSL L7-0979 NODE_8_length_151036_cov_43.834385, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 51294 30 100.0 35 .............................. ACGTTCATCACTTCGTTACTCGTGCACGCATCACC 51229 30 100.0 37 .............................. TATTTTTAATTTGCTTTTCAGTCAAATCCATCTGTTT 51162 30 100.0 36 .............................. AACAATCCATCTTCGTATTCAACTTCAATGTACCTT 51096 30 100.0 35 .............................. ACAAAAGTTGCGATGGATTACGATTCTTCACCTAT 51031 30 100.0 35 .............................. AGCGTTTTGTCATTTAGAGGTAAAGCGGCTTCGGC 50966 30 100.0 36 .............................. AAGCTACATCATCTTCTAATATTTTTAGAAGTTTTG 50900 30 100.0 36 .............................. TAATAAAAAGCACTACGGGGGATGTAGCGCCTGCTC 50834 30 100.0 37 .............................. CCCGTTCGATGAAACAGGGCATAGACGCTCTGTTAGC 50767 30 100.0 34 .............................. TATACCATTGGCTACTCCCTCCTCTAAGTTCTCA 50703 30 100.0 36 .............................. ATCCAAGAAGCGAAGGAATACATTCAGAAGAAAATC 50637 30 96.7 36 ........................A..... GATTTAGCAACTATATTCAAGGGTAATTTGCTAATG 50571 30 100.0 35 .............................. CGGGGTGGTCCAGCTGACGAACTTTGGGTATCTGG 50506 30 100.0 36 .............................. GATACTAGCACACGTCGCGGACGATTGGGCATTTTA 50440 30 96.7 35 .............C................ TAATAGAAGAATTTTTTCGATATACAGATTCTATC 50375 30 93.3 36 ..C.................C......... ATATCCGAACTTAATTTCAAAACACTCGGACTTGTT 50309 30 80.0 0 .............C...A.....CA...TC | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 97.9 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GATGCTGAGCGCAACATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTATTAATTGCCGTCGGATTCGCAGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGATGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGATTTCTATTTAATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTCGGGGACATCGACAGATTTTGTTTTTGCTTAGGGAGAGAATGGAGTAGGATGTTTTTCGAGAGGTTGAAAAAAATAAGCAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCAAATAAGGAGGGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACCCCACTCGACGTATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAATACACTAACCATGAAAAAACCACTCGATATCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAACC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //