Array 1 26810-25014 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLK01000037.1 Streptomyces albidoflavus strain FXJ.2339 Scaffold20_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 26809 28 100.0 33 ............................ GAGCACTACGGCCAAGATCCGCCTGCGGCGCGA 26748 28 100.0 33 ............................ GGGTGCTGATGGCGGCCTGGTCGCCGGGGGCGG 26687 28 100.0 34 ............................ GGAGTTCGACCCCCAGCGCATCCAGCAGCGCGCC 26625 28 100.0 33 ............................ TGCCATGATGTGGCTCCGTCCTGTAGGGCGGGT 26564 28 100.0 33 ............................ CGCCCCGGCCGTGTCCGCCGTGTCCGCCGCCCC 26503 28 100.0 33 ............................ GTCGCGGACGCGGATGGCGGCCTCGTACGCGTC 26442 28 100.0 33 ............................ CGTGGGCGCGACGGACGGCGCCAACAACACGAT 26381 28 100.0 33 ............................ GCACTCCACGAGGTGCGCGTGGGCGTCCCAGAG 26320 28 100.0 34 ............................ CGTGCAGTGGGTCCACCTGCTCAACGGCGTCCGC 26258 28 100.0 33 ............................ GAGCGTGCCAAACCCTGTCCACGTCAGAGTCCA 26197 28 100.0 33 ............................ GGTCCAGGAGTGGGCCGGGTGGCGTACCCGCAA 26136 28 100.0 33 ............................ GGAGGCGGGCGCCTTCCAGCTCGGCGAGGGCGA 26075 28 100.0 33 ............................ CCGGGGTGACCAACTGGGCGCCGCGACAACCCG 26014 28 100.0 33 ............................ CGCCGGAGCTTCGTGTCCGCCGTGCAGGGTCTC 25953 28 96.4 33 ..........................T. CGAGAACGGCGTCCTGGTCTGCGGCAAGTGCGG 25892 28 100.0 33 ............................ CCGGTCGGCGGACTTGATCTCCACCCGCAGCCG 25831 28 89.3 33 .............G.A........T... CTCCGCCGGAGCCTGACGGCCGTGACGCAGCGC 25770 28 92.9 33 .............G..........T... GGAGACCAGCACGGTGCCGTCGGGGTCCTCGGT 25709 28 92.9 33 .............G..........T... GATGCCGGAGAGCCTGAACCACTGGCGCGTCAC 25648 28 100.0 33 ............................ CCCGCACCACCGAACTGGTGGCTGACCTGCGCG 25587 28 96.4 33 ..........T................. GCAGTGGGTGAACGGCAAGCTGAAGGATCACTG 25526 28 85.7 30 .....................C.C.G.T GATCGCGCACCTCGCGGAGCGCGGACTCGT 25468 28 96.4 33 .............G.............. TGGGCGCTGAGCTTGTCCAGGTCGTCCAGGGTC 25407 28 100.0 33 ............................ GCCGGGGCCGTCGAGGTAGTCGGCGCGGACGGT 25346 28 96.4 33 ....................A....... GGCGGCGTCTACGAGGGGAGCCAGGGTGCGCGC 25285 28 89.3 33 A.....T.T................... CGCTGGTGCCCGGTCGCTGGCAGGCGGTTGTCT 25224 28 96.4 33 .....................G...... GCCCCGCGACCCCGACTCCGGCTGCACGGGCCG TG [25201] 25161 28 92.9 33 ...........G..............T. TGCCGTCGTCGTGGCGTTGCCGCGGTCGGACCC 25100 28 92.9 31 .......T...G................ CACGACGCAGCCCGCTACGCCCGGCGCTGCC 25041 28 85.7 0 ......T...TG.........G...... | ========== ====== ====== ====== ============================ ================================== ================== 30 28 96.8 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : AAGGCGAGGGCGCGTCACCGTCCCCGGCCCCTTCGCCCCCGCCAGCCGTTCGGGTGTGCTCACCAACAGTGATGCGGTGCGACCCCGCGTCCCCGTCTGCCTCCGAGCGGACCACCGCGGCGCCGGCGCCGGACGCCGGCGGGTACTGGCCCGTGTGGTAGATGACGGTAAGGAACGGAAGCACCGCGTCCGTGCTGATCAGGTCGCCGTTGCCCCTGACCGGCAGGAGTTCGGGAGAGTGCAAGCCGCCTACCGGCAGCGCCTGGAGCAACGCCCCGTACCCTCAGCAGAACCAACAGCCGCCTCAGCGCGACGAGCAGGCACGCACCGTCCGGGGATTGGGAAGGTGTGACACCCTCCGATTCCGTACGGTCCGCGAGCCTCTCTCGGAGGTCGCGTACATCGCGATCTCTGACGATCCCATCCCGACCCACGAACGAAGGGTGAAGCACATGAATGAAGATGAGGCACCCTGGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : GAGCCAGCCTGTGGTCATTCGATCGGGGCTCGCTTCGGGCCGCTGCGGCAGCTCACCTTCGGGCTCACTGCGCGCGGCGGGGCCGGTGCTGCGGCGGGATCGCGGGTTTTGCCCTCGTAGGGGCGTGATCGCACGGTCCAGGGCCCGAGCGAGGCCCGAACGGGAGGGTCATGCCGCCTTCCTGCGGCCGGGGCCGAGGATCTCCAGCCGGCGGACGGTCTCTCGGCCGCCGGTCTCCTCGGCGATGCGGTCGAGGAGCGCGTGCTGGCGGTGGCGGACAGCGGTGGCTGCGGCCGAGGAGTCGGGCTGGAGGGTGAGGGTCGCAGTGTTCTCGTCGTACTTGACGGCGGTGACGCGGCCAGCGAGGTCGTCGGCGATGTGCGACCACCGGTCCAGCAAGCCGCCGGCCGCGACCGGGGCCGTCCAGGCGCGGTCGGCGATGAGCTGCTGGATAGCCTCGCCGAAGGAGACCGGCTCCCGACTGCCGGTCCTGCGGGTGG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32517-30418 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLK01000037.1 Streptomyces albidoflavus strain FXJ.2339 Scaffold20_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32516 28 100.0 33 ............................ GACGACGGCGCTCCTGGCCCTGTCCCTCTCCGG 32455 28 100.0 33 ............................ CTGTCCGTGTGTGGTGAGCGGTTCCCGTTCCGC 32394 28 100.0 33 ............................ TCTGCCACGCCTCCTCCAGCACCAGGTGACGGT 32333 28 100.0 33 ............................ CCCGTCCAGCTGACTGCCGGTCGACACCCGGAT 32272 28 100.0 33 ............................ CTCCTCCTCCGTGACGCGGACTTCCCAGCCCGA 32211 28 100.0 33 ............................ CCGCTGCCCTCCGCCTCCGTGCGCCCTCCCCGC 32150 28 100.0 33 ............................ TGTTGAGGAGCGTCGACTCCTGTAGGGCGGTCA 32089 28 100.0 33 ............................ CTGGTTGTCGATGATCTGCCCATCCGGCGTCGA 32028 28 100.0 33 ............................ GATGAGGAAGAGGTCCCCGAGGAGGCCCCCGAC 31967 28 100.0 33 ............................ GTCAGCCTCACGGTGGCGCTCGCCACCGGCACC 31906 28 100.0 33 ............................ GGCGTGGGACGCCGTCGTAAACCTGACGAAGAA 31845 28 100.0 33 ............................ GTGGCGCCGGGAGATCGCGTCGGCGACGACCCG 31784 28 100.0 33 ............................ GAGGTGGCGGTGTGCCCTCCTCTGACGCGCAAG 31723 28 100.0 33 ............................ TGGCTGGGGGCGGACACGGCCGACCGTGACGCT 31662 28 100.0 33 ............................ TTCCCTAGGGAGAGGGAGGGGCCGCACAGTGCG 31601 28 100.0 33 ............................ GGCCGCGCCGCGCTGACCGACGACCAGGCGGCG 31540 28 100.0 33 ............................ GTCCCGGGACTTGATCGAGGCGGTGGAGACGGG 31479 28 100.0 33 ............................ CGCCTCGTGGCAGACACGCCGCCACCCACACCC 31418 28 100.0 33 ............................ CCTTGAGTCGGGCGTGTCCCGCCGTCGCCTTCC 31357 28 100.0 33 ............................ GACGACGAGGACGGCACCCTTGGCGTCGGATTC 31296 28 100.0 33 ............................ CGAGCGATGGCCCGGGATGTAGGAGTCCCGGGC 31235 28 100.0 33 ............................ GCCCAAGGAGGAACCCCCGGAGGAGCCCCAGGC 31174 28 100.0 33 ............................ CCAGAGATCGTCAGACGTGTCGCGGTACTCGGC 31113 28 100.0 33 ............................ GGCGGCGGCCTCTGGACGCGCGGCACGCAGCCC 31052 28 100.0 33 ............................ CTGGCAGCTCGGCCTGGTCGCCGCGCTGGTCGT 30991 28 100.0 33 ............................ CCGTGGCCGGCCAGACCGTACCGCTCCAGAAGA 30930 28 100.0 33 ............................ CGGTGGGCTGGGGTGAGCGCATCGGCCTGGCCG 30869 28 100.0 33 ............................ GCGCCACGCCACGCGCCGGGAGCTGCTGCCCTT 30808 28 100.0 33 ............................ GCGATCGTCGTGCGGCGCGGACTGCTCGGCTCC 30747 28 100.0 33 ............................ CACGGTGCGGTCGTACGGCACGGCCTGGCGGGT 30686 28 100.0 30 ............................ CCCCTCCGCGATGGTGAGCGGAGTCTCGCC 30628 28 100.0 33 ............................ GCGCGATACGAGGAGAGCCCATGGCGCAGCAGC 30567 28 100.0 33 ............................ GTCCTGCTTCGGCAGCATGCCGATGATGGACGT 30506 28 100.0 33 ............................ GAAGGTTGGGGAGATGGTCGATCCGGCGTTGCT 30445 28 82.1 0 ..T.T............A...GC..... | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.5 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : ACGCGCCGGCCTCTTCGTCACCCACCGCCTCGCCTCAGCCCGCATCGCCGACCGCGTAGTGGTCCTCCACCACGGCCGCGTCACCGAATCCGGAACATACGACGAGTTGCTACACCAGCCCGGCAGCCGCTTCGCCGAGCTACACCAACTCCAAAACGGAACCGAACTGGTCCCGTGAACATTGCCCCCGCCTGGCGTCGGCCCTCCCACACCTGACCCCATTCCCGGGAGAGCACAAGCCGCCTACCAGCACCGCCTGGAGCAACGCCCCGTACCCCCAGCAGAACCAACAGCCACCTCAGCGCGACGAGCAGGCACGCACCGTCCGGGGATTGGGAAGGTGTGACACCCTCCGATTCCGTACGGTAGGCGAGCCTCTCTCGGAGGTCGCGTACATCGCGATCTCTGACGATCCCCATTCGCTCCCGACCCACGAACGAAGGGTGAAGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CCGCAACGGAGAGCAGTTGGAGATCACCCTCTAGCACTCCAGCAGCACTTCGTGATCATGGGCTATGGGGCATCGGGCAGGCCAGCTGTGGAGTCACTGGTTCATGCCGACAGGCGTGTGGTCAGGGCGTTGGCGAACCGGTGGTACTCGGCGACGACCGGCATGCTCGTGTTCTGCCCGTAGTGGGCGAGTCCGTGTGCGAGGTCTGAGCGGGCCTCGTTCGTGTCCCCGCGCAGGAAGTGAAGGGCTGGGAGGAGAATTCTGGTCCGATCGGGGTTGGGCACGTTTCCGCCTGCCCGAAGGGCGGTCAGTAGTGCGTCTGTGCTGGCGTGCTGCCGGGCGAACGGCAGGCCGTAGGCCTGAACGAGTTCGCATAGCTCGTCGGTGGCGCGTTCCGCGTCGCCCGGTTCGGCGACCCGTAGTTGCAGGAGGCTGTTGCCGGGGGTGAGGTGGCCGACCGGTCGGGCGATCGTGGCCGACGTCAGGGAAGCGGCCCCGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 39069-37088 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLK01000037.1 Streptomyces albidoflavus strain FXJ.2339 Scaffold20_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39068 29 96.6 32 ............................C CGCACCAGCGCCGAGCGGCAGCAGATCCGCGA 39007 29 96.6 32 ............................C GGCTGGCACCCGCACCTGCACGTCGCCGTCTT 38946 29 100.0 32 ............................. TGCTGTTCCAGCTCGGCCGCCGACTCCTTCGA 38885 29 96.6 32 ............................C TGCTGGATGCGGACGCGGGCGCTGCCCGGGTT 38824 29 96.6 32 ............................C CTCCTCGTTGTCGACACGCTGCTCGATGTACC 38763 29 100.0 32 ............................. GCCCTGCGGGCTGAGGTCTCCTACCGCCGGAT 38702 29 96.6 32 ............................C TCCCCGCCCCCGGGTCCGGCCGGCACCGCGAC 38641 29 100.0 32 ............................. CTGGAGCGAGCGAATGCAACCACCCGAACACC 38580 29 100.0 32 ............................. CCGCCCACCGCGAGGAGGACGACCACCCCGAG 38519 29 100.0 32 ............................. GCGCCGTGCGCACCACCGGCGAGCCCATGACC 38458 29 100.0 32 ............................. CACTGGCCGCCGTGGATGGCGGCGTACTCCTC 38397 29 96.6 32 ............................C GATCTCCCGCCTGGTGTCCGGCCGCACCGCCC 38336 29 96.6 32 ............................C ATCGTCATCGTCGTCGTGGTGGCGCCACCACA 38275 29 96.6 32 ............................T TCCTCCACCCCAACCACCGCATGGGCGGGGAC 38214 29 96.6 32 ............................C CGTACTCCCGGCCGCGCCCGCCGCGAAGGAGC 38153 29 100.0 32 ............................. TTCCCGGCGGCCGACGCGAACTTCTCGCCCTT 38092 29 96.6 32 ............................C TCGGCTGGGACGTCCACGCCTCCGCCCCCCTG 38031 29 96.6 32 .................A........... CCTTCATGAAACAGCGAGAAGGAGTGAAAGGG 37970 29 100.0 32 ............................. TCCGCCCGCTGACGGCTGTCCCCGCCGGTCGC 37909 29 100.0 32 ............................. TGGCCACAGGCACCCCAGCGGCGGGCCCTGGA 37848 29 100.0 32 ............................. ACCGCGGTCGGCCGCGACTACGTGGACGAGGT 37787 29 96.6 32 ............................C TGTACGGCCTCAGTCGATTCGTGCATCGTGTC 37726 29 96.6 32 ............................A CCCATTCGTGACGGTCGGTGTCCGCATACACT 37665 29 100.0 32 ............................. GAGCTGGGGCTGTCCTGGCTGACCGTCGACAG 37604 29 96.6 32 ............................C CTCTCCAGCCGGGTCGACGTCATGGAGCAGAT 37543 29 100.0 32 ............................. CTCGCGGTGACGCTACTGCGCTGCGCCCCGAC 37482 29 96.6 32 ............................C CATCCTCATGGCGCAGGCCGCGCAGCCCCTGG 37421 29 96.6 32 ............................C CCGCGGCCGCCGCACATCGGGCCCATGGTCGA 37360 29 100.0 32 ............................. GTCCCCGAGGAGTTCCGCCGCTGGATCTCCAA 37299 29 96.6 32 ............................C GACCACGCTGGGCAGGCCACCATCAACGACAC 37238 29 100.0 32 ............................. GGCTCGTCGTTCACGTTCCGCGTGCTCGATGG 37177 29 89.7 32 .C...........CA.............. TACCTGAAACCGCAGCGCCTCTTCTTCGTCGG 37116 29 86.2 0 ...........G.C.............TC | ========== ====== ====== ====== ============================= ================================ ================== 33 29 97.5 32 GTCGGCCCCGCACGCGCGGGGATGCTCCG # Left flank : CGGAGCTCCAGACACTGCCTGGGCAGATGCCCGATGTGGCGGCGCCGGCCCCGGACACCGAACGGCCCCCTCCCGTCCGGTGCGCTGGCTGGCCCGGACCTGGCTGGCGCTCTCTGATGCTGATGACCGGGCGCTGGCGCCTCTGCGGGTGCTGCCCGCTGCCTCACCCGCTCTGGCCGGCGCCGTCTCGGCCGCCGTACTGCAGATCCGCCCGGCCTGGTACCGGGGCGGCATCGCCTGCATGGAGATTTCGCTCGCCACGGTCCTCGCCCTTGCGCTCTGCGGCCGACGGGCCCACTGGGTACTGGGCGCACGGCAGTTGCCCACCAAGGCACATGCGTGGGTGTGGACCGAGGACGGCGCATTCGGGCTGTCCGGCCGCGACCGCCCGGACCCCGCCGCCTCTGGGTCGGGGCCCTCGCCGCACCTCCCGTGCCGAAAGGGTGACGCACATGAATGAAAATGAGGCATCCTCGCGGTAACCTCGCAGGTCAGCAAGT # Right flank : TGTCCGCGCGGGACGCCGCGCTCAGCGTGAAGTCGGCCCCGCACCTGCGGAGGCACCCCGCTACCTGCGGCGAGGCTCGCGGGCCACGACGTGTCCTCTCCGCGCGAGCGGAGGTACCCCGTTGATGCCGTGCCCGAGGACGACGATGCCCTCTTCAGCGTGAGCGGAGGAAGCCCGCATCAGGACCTCGGCCAGGGAAAAGACGGGGCCTCTTCGCGCCTGCGGGGATGCTTCAATCTCACTGGGGAGCGGCGCGGTCAGCGTGCGGCTGTTCCCGCGCTCGCGGGGGGATGGCCCTTGGCGGTCATTTCGGCGAACGGCACGTTGGCTCCGTACTGAGCTGAGCACCCGCCGGGCAGAGTTATTCCATCCGACCAAGGGAGAGACTGCAGTGTCGTCCGTTCCCCGCTCAGAACGATACGAGAACATCCCGACCGCCTTGGTGTATGACATCTTCGCGGAGTTGGCCACCCAGCTCACCGGTCGCTACATCCGTCTGT # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 47597-45313 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLK01000037.1 Streptomyces albidoflavus strain FXJ.2339 Scaffold20_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47596 28 100.0 33 ............................ GACCTGGGCGTTCTGGTTGGAGCCTTCGCCGAC 47535 28 100.0 33 ............................ CACCGCGCTCGCGGACTTGTTGAGCAGGGAGCC 47474 28 100.0 33 ............................ GGTGCTGGTCGTGACGCTGGCGTGGATCGAACA 47413 28 100.0 33 ............................ GGCCGCGCGGTCGCACCGGCAGGCGGCCAAGTC 47352 28 100.0 33 ............................ CCCCTGACCCCGGACGCCGCCCTCGTGCGCCTG 47291 28 100.0 33 ............................ CCACGGCCGGGTCACGGTCGCGGACGCCATGCT 47230 28 100.0 33 ............................ CGACGACGCCGAGCGCTTCCGCTACCTCCTGGA 47169 28 100.0 33 ............................ GGTGACCTCGGAGGAGTCGTCGTTCGAGGAGTC 47108 28 100.0 33 ............................ GCTCGGCGGCGGCCGAGGAGCGCGGCGACCAGG 47047 28 100.0 33 ............................ TCGAGTCCCGCCGGGTATCGACAGTTGACGAAT 46986 28 100.0 33 ............................ TGCGCGGTCAGTCGTCGTCGTGCTCCTGGTCGT 46925 28 100.0 33 ............................ CACGGCCGGGTGTTCGGGCTGGCCCTCCGGTGG 46864 28 100.0 33 ............................ GGGCTGCCGGAAACGGGTCAGGCCCGGCCCGAG 46803 28 100.0 33 ............................ GTACACGCACATGAGGCCCGCGCTCGACGTCGA 46742 28 100.0 33 ............................ CGCCTGAGCCCGCCGGAGGGTTCCGGGTACGAC 46681 28 100.0 33 ............................ TCTTCGGCGCCACGTCTGCCTCCTCAGTCAGTG 46620 28 100.0 33 ............................ CCCGCCCGCGCCCGCGACCTCCGCCTCCAGGCC 46559 28 100.0 33 ............................ GCCGAGGCGGGGCTTTCGCGTGTCCGGGATCAG 46498 28 100.0 33 ............................ GCGCCGCGAACAGGCCGAGACCAAGCGCCGCGA 46437 28 100.0 33 ............................ GCCCCACCGGGGTTTTCCGGGAGTTACCAGCTC 46376 28 100.0 33 ............................ CCGACACGGCCGTCCGCGCGTTCTCCTCTGCCC 46315 28 100.0 33 ............................ GGCCCGCGAGGAGGAGGCCCGGCGCCAAGCGGC 46254 28 100.0 33 ............................ CCGTGCCCGGACCTCCGGCGGGACACCCCCGTG 46193 28 100.0 33 ............................ GGTGCGGCGGGTCCACTGTTCACGCTGGGGCAG 46132 28 100.0 33 ............................ GTCCCGGACGACATCGTGGACATGGCGTGCCGG 46071 28 100.0 33 ............................ GTTGCGGTACGCGACGCCCGAGGCCGCCCGGCT 46010 28 100.0 33 ............................ GGCGTACTCGTCCACGCTGACGCGGGTGGCGGT 45949 28 100.0 33 ............................ CGGGATGTGCACCCGGTTGTCGCGGATCACGGT 45888 28 100.0 33 ............................ GCCAGGCGGACCACTGCCAGTCCTGGGGGGTGA 45827 28 100.0 33 ............................ CCCGTGCAGAGTTTCCGTACAACCTTTTCGACG 45766 28 100.0 33 ............................ GTCGACGCCATCGAGCCCGGCACCCGCGACACG 45705 28 100.0 33 ............................ GCGGCGGTGCGCGCCGACAACACCGGCCTCGCT 45644 28 100.0 33 ............................ CGCCCTCGCGGCGCCCTTCATGGCGCTGATGCC 45583 28 100.0 33 ............................ GACGCGCACGAGGGGTTCGCCCTCGGGGACGTG 45522 28 100.0 33 ............................ CTCCTTCAACCCGGAGCCCATGTTCCCGGTGTC 45461 28 100.0 33 ............................ GAGCTTCCAGGACTTCCGCCCCCTCCTCCCCGC 45400 26 92.9 33 ....................--...... GGGTCTGTGGTCCCTCACCCTCGCCCCGTACGC 45341 28 96.4 0 .............G.............. | G [45320] ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.7 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : ATGCAGGCGTTGCCTTACCAAGATCGTGAACAGCGCAAAGCCACGCAAACAACCTGCGGCCCCGACCCGGACCACCGGCCACCTCATCCAGCAGGCCCCGCGTCGAAGGCGCAAGGAAGCTCTCCCACAGCCGCTCACCCACAGCCCCGGTATCAAGCAGATGCGACAGAAGAAGATTCGTCTGCCCACCGGCACGCTCCGCCGACTTCCCCCACAAGACCCCTAACGGGCCCTCCACCGACTCCAGCGGCACCCTTGCATCCGGCACGCCGGACCACCCTTCGCTCAGCACTCACGACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGACGGCCCAAAGACGAACATCCCCCACGGCGGGCGCCCGCACCACGCGGTCACACACCGCGCTCCCTGAACTCCACCACTCGCTGCCCGGCCCACGAACTAAGGGCGACGCACATGAATGAAAATGAAGCACTCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : GTGCGCGTGGAGGCGCTGTTCACCGGCGGGGTGCTGGGCGGCCGGTGGGCTCTGGTGGGGTCCACGACGGAGCGGGACCGGGCGCTGGCCTGGATGGACCCGGACTGGGCGCGGGCCGGTGTCGAGGGGGTGGTGGTGAAGCCTGCCGGCGGACGGTACCGGCCCGGCAGGGGCGGCTGGTGGAAGGTGCGGTCGCGGGAGTCCACCGAGGGCGTGGTGGGCGCGGTGACCGGGCCCCTCTCGGCACCGGACCCCCTGCTGCTGGGCCGCTGGGACGCAGAGGCGCGCTTCAGGATGACCGCCCGGACGACACCGCTCCCGGCCACCGCACGCCGCGAGATCGGCGCCCGCCTCACAGCAGCCGGCGACGACCACCCGTGGCACGGCGTGACGTTCTCGCCCGGCTGGGGGACACGCACACCGCTGCCGCACGTCCCCGTCGAACCGGCCCTCGTCGCCGAGGTCACCGCCGACACCTCGGTGGACGACGCAGGCCGGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 57927-59721 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLK01000037.1 Streptomyces albidoflavus strain FXJ.2339 Scaffold20_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 57927 29 93.1 32 ..........T.................C CAGCAGGCCGTCCTTGCGGCGGTCGGCTCCGG 57988 29 96.6 32 ..........T.................. CGGGTCGAGCCGCTGGTCGAGTTGGACCGGCG 58049 29 93.1 32 ..........T.................C ACCCACCCTGTCCGGGTGACGGCCTCGGAGTG 58110 29 96.6 32 ..........T.................. CGGTTGGCGGCCCGAGCGCTGGTCGGGCTGCA 58171 29 93.1 33 ..........T.................T CAGGTAGAGGCACGCGACGTGCGCGGTCGCCTT 58233 29 93.1 32 ..........T.................C CACGCTCTGACCTGCGTGACAGAGCGCGTCAC 58294 29 96.6 32 ..........T.................. TCGACCGGCAGCAGTTCGGCGCGCACTCCCAG 58355 29 100.0 32 ............................. ACCGTGGTCTTCAGCCACCTGGCCCACCAGAT 58416 29 100.0 32 ............................. TCCTTGATGTAGTCGGCGCGCTCCGACAGCCG 58477 29 96.6 32 ............................T TGACGTGTCATAGGGGATCAGCTTGGCGTTCT 58538 29 96.6 32 ............................C AGCCCGCGGAGGGACCCTTCGGTGTAGCGAGA 58599 29 96.6 29 ............................C ACGCGCTGGGACGACGACCTCTCCGGTCG 58657 29 100.0 32 ............................. CGGTGATCTCCCCGATTCGCGCCAAGGCCCGA 58718 29 96.6 32 ............................C GTGGGAGTAGCCAGGTGACTGCCGGGCAAGGG 58779 29 100.0 32 ............................. TGAGCAGGCGCTAGCCTCTCGCCCGCTGGTGG 58840 29 100.0 32 ............................. CGTCTGACCGGCGCTCAGGTGCTCGCGGCTGG 58901 29 96.6 32 ............................C CCCTGCGGCAACGACGCGAACATGCTCGATGT 58962 29 100.0 32 ............................. CGTCCGCCGCATTCTTTTTGCGCGCTTGCACG 59023 29 100.0 32 ............................. CGCTGAGCACGCATCAGCTCGTCGGTGTGGAA 59084 29 96.6 32 ............................C TGGAGGAACAAGCCGATGCGGGCGCTCCCCCC 59145 29 96.6 32 ............................C GCGGTACTCGCCAGCGAGGTACTTGGTGCTCG 59206 29 96.6 32 ............................C GACCTCCGCACCGGCGACGTCATCCGCACGGC 59267 29 100.0 32 ............................. GTCATCCAGGACACGCTCGCGGCCGTCACCGC 59328 29 100.0 32 ............................. GCGTCGCGGCCCTCGGCGGCCCGGCGTTCCAT 59389 29 96.6 33 ............................C CTCCTCCCCCTACCCCCTCACCGACCCCGCTGG 59451 29 96.6 32 ............................C TGTCCGCGAGCTGCCGGTGGTCCGGCTGGTCC 59512 29 100.0 32 ............................. GCCCGCCAGCTCCGCTACGACCTGGACGAGCT 59573 29 96.6 32 ......................C...... AGGTCATCCGCGACGGCGGCCGGACGTTCGCC 59634 28 89.7 31 .....T.T........-............ CGCGCCACGCAGGACCACTGGCGCACCTGTT 59693 29 93.1 0 ..............C.............C | Deletion [59754] ========== ====== ====== ====== ============================= ================================= ================== 30 29 96.9 32 GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Left flank : CCGCACAAGACACTCATCCGGCCACCCGCTCACACCTTGACCTCTCGCCAGCTGCGCTCGGGGAACAGCACATCGCCATCGTCGGACCAGAGTTCGAAGACCAAGCCCCGCCCCCGGGACAACAGCCATGACTGTCATCATCCTGATCGCGGCTCCAGAAGGCCTACGCGGCCACCTCACCCGCTGGATGGTCGAAGTCAACGCTGGAGTCTTCGTCGGCAACCCCAGCCGGCGAATCCGCGACCGTCTGTGGGAACTCCTCACCAACCGCATCGGCGACGGTCAAGCCGTCCTTGTCGAACCCGCCGCCAATGAACAAGGCTGGGCCGTCCGTACTGCCGGCCGTGACCGCTGGCGGCCCGTCGACTACGAAGGGCTTATCCTCTCCGCTCGAAGGCCAGCACATACACAAGATCGACAGAGCCGGAACTGATCGGTACACCGCAATGCAACTAAATGAGAACGGCAGACCGCTCAGATAACGCCGCAGGTCAGCAAGT # Right flank : CTTCCCTTGGCGTACGGCGTCGGGGAGCCAGCGGTCGGCCCGGCCGACTGGCAGTTGCCCTCCGGGGCGGCCGCGGATCGCAACCGCCCGGCAGGGGAAACCCCGGGCCTGGGGCTCAGTCGTCGGGGGTGGTGTTGGACGCGTCGCAGGACCAGCAGGTCCACTCTCCGGGCAGTTCGTAGTGCGTGGTGGTCCAGAACCCTTTGGGGCGTCCCCGGATCACGTTGATCTCCCAGCACCGCCAGCAGTTGAACTCGAATTCTTCCACCACTTCAGCATCAACAGCTTTGGGTGATCGGGCGGCCGACTGCCCGAAAGTCGATCAAATGCGGCTGAATCGTCAGGCTTGCCGAGCAGTCAGAGGTCTGGGCAAGCCTTCCACCTGGTCTCTTCGTGGGTTGGGCAAGCCTTTCGGCAAGTGGGCGTGTGGAGAGTGGGGCACATCCGTTCCCGAGGAGGTGTGCCGTGCACGACTGCGGACCGGCGCTGACGCCGTACGA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Alternate repeat : GTCGGCCCCGTGCCTGCGGGGGTGCTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 124925-124712 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLK01000025.1 Streptomyces albidoflavus strain FXJ.2339 Scaffold4_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 124924 30 96.7 31 .............................C TCCCGCACCGGCGGGTGTGGCTGGTCGGCGA 124863 30 100.0 31 .............................. ACCTCGTCCTCGACGAGCTGTGGCGCGTCCT 124802 30 90.0 31 ...........A...........A.....G AGGCCACTCCGGTCGTCACGAACATCATCGA 124741 30 76.7 0 ..............G......CAA.C.T.A | ========== ====== ====== ====== ============================== =============================== ================== 4 30 90.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : TGGGCAAGCCCACACCGCGCCCCCGCTACGCCACCGGCAAAGTCCGATACCAGGCGAACTGCTCGTGAGTGGGCATCCAGTGCTGGCCGCACCTGGAGCAGTACCAGCGCCAGTTGTCGGGGTCGTTGCGGAGGTAGGTCGTGTCCTTCCAGAGCCGGCCGTGGATGTCCGTGTGGCAGGCCCGGTCAGGACAGGGCGGGGGAACGGGCGTGGTGCGCGGGCGAGTTGTGGTCAGCATGGGCGCCTCCGTGACTCGATGGGGTCAGGAGGGTGAAACGAGGGGGCTCGGGGCTGGGTGTGGGGCCGGGGCGAGGTGCGTTCGTTCGCGTGATGAATGGGGGATGAGATGCGCGGGGGACCGGGGTCTGCTCCGCCGCCTCGGTCCGCTGCGTAGGATCTAGCGAGGACTCAAGGCGAGGTGGGCATTGGGGCGAATGTCGCTATCGGTGAAGCGTTCAGAAACTGGGGCAGGGGTGCCGTAAGGCCGCTGGTCAGGGAGA # Right flank : CCCCGCCTCACCCCGACCCGGCGCCCAGCGCCGCCACAGGCCTTGCTCCCCCCACCCCCACCTCCTACCATGAATGCGCTTTCACAACGCGTGAGGCGGGTCGGTGGGCTCGGGTTCTGGATGGTCGGAGCGGGCGGGACGGGATGAGGGTAGGGGCGCGTGGGTGACGGGGTGGCGGGGACGCCGACGGTGTATGACGTGGCCGGGCGGGCCGGGGTGTCGATCGCGACCGTGTCGCGGGTGTACCGGAGTCCGGAGTCGGTGCGGGAGGCCACGCGGGAGAAGGTGCTCGTGGCCGCGCGGGAGCTGGGGTACGTGCCCAGCGGGAGTGCGCGCGGGCTGGCGAGCCGGTCGACGGGGGTGCTGGGGCTCTGCTTCCCCGACTACTCCGACCCGGACGCCGAGAGCGAGGCGGCCACGGTGGACGCCGACGACGACCACGCGTTCATGCTCTACTCCGACCAGATCATCCGGGGTATGGAGCGGGCCGCGCGACGGCA # Questionable array : NO Score: 3.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //