Array 1 14156-13320 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLYM01000024.1 Mannheimia haemolytica strain 16041065 GH NODE_33_length_23549_cov_52.503841, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 14155 32 93.8 36 C....................C.......... CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCAC 14087 32 93.8 35 C....................C.......... GTGGCACAGTAACACGAGCAGATGCTGATAAACGC 14020 32 93.8 34 C....................C.......... CAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCG 13954 32 93.8 36 C....................C.......... TACACTTATTGCCATAGGGTAGTAGTAATCTTTTAC 13886 32 93.8 34 C....................C.......... TGCGATTTTTGGATTTTTCGGGCGATAAATGATA 13820 32 96.9 34 C............................... TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGG 13754 32 100.0 35 ................................ TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAA 13687 32 100.0 34 ................................ TTTACCGTTTACCGATTGGATTTTAATGCTAGAG 13621 32 100.0 35 ................................ CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGC 13554 32 100.0 35 ................................ CTCATAACGAATCCAATCCTGTTCGGTTAATCCCC 13487 32 100.0 37 ................................ AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAA 13418 32 100.0 35 ................................ CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG 13351 32 93.8 0 ..........T............T........ | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 96.9 35 GCAGCCACCTACGCGTGGCTGTGAATTGAAAC # Left flank : TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA # Right flank : GGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAAA # Questionable array : NO Score: 8.88 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTACGCGTGGCTGTGAATTGAAAC # Alternate repeat : CAGCCACCTACGCGTGGCTGCGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.30,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //