Array 1 690068-690767 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIOJ010000001.1 Umezawaea beigongshangensis strain REN6 NODE_1_length_986907_cov_140.433691, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 690068 29 100.0 32 ............................. TCCCTCCGGGACAGGCCACCGCCGACGACGTG 690129 29 96.6 32 ............................G TCCTGCATCGTCGCCCTGCTCAAAAACCAAGC 690190 29 96.6 32 ............................G TCCGCGTAGCCGTTGGCCTTGAGCCACGCGCG 690251 29 96.6 32 ............................G GGTACGAGCCAGGACTCTCCGACATCCTCGAC 690312 29 100.0 32 ............................. ACCCGGCCGCTGTGCGTGCGGGAGCTGCCCGA 690373 29 100.0 32 ............................. ACGCGTAACGTTCCTCTTGTCAGCAACACGCA 690434 29 100.0 32 ............................. GCCGCCGCCACCGTGTGCCCGTCCACGATGTG 690495 29 96.6 32 ............................T GGTTAGCGTTCATCGGCACCGCCGTTCACGCG 690556 29 100.0 32 ............................. AGCTCGCGCTCGTCGGCGCAGACCGGCCAGGT 690617 29 100.0 32 ............................. ACCGTGTCCGTCTACCTGGACAAGCTCCGCGA 690678 29 96.6 32 .................A........... CTACGGACTCAAAATCCGTCCAGTGTGCGTTC 690739 29 86.2 0 ...............A.....TG....G. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.4 32 GTCTTCCCCGCGCGAGCGGGGGTGTTCCC # Left flank : CGGTGGGCATCGCGCTGGCCCACAACGCCAGGCTGGCCGGTTACGACGTGCTGGCCGTGACGGCGGGCGACGCGGAGCTGGCGAACGCCGTGGCGAGCCTGGACTCGCGCGACGTGCTGATCGCGATCAGCTTCTGGCGGCTGTACGAGAGCACGGTCCTGGCCGCGAACGAGGCCCGCTCACGTGGCGCGAGGGTGTTCGCGGTGACCGACGCGGCGAGCCCGGCCCTGGCGGGCGCGGCGGAGGAGATCGTGCTGGTCCCGGCGGAGGGCGTCGCGTTCTTCCCGTCCCTCACGGCCGGAATGGCCGTGGCCCAAGCGGTGGTGGCCCAACTGGCGACCGTGGACCCGGCCCGGACAGCGGCGTCGATCGAAGCGGCGGAAGCGATGTGGTCGAAGTTCGGCCTCCTGCACCGGAGGCCGACGCAGGGGACGTGAGCGAGGTCGGGCAAAGGCATCCTGAAACGCCGGTATGCTCGGTATAGGTGCAGGTCAAGAAGT # Right flank : CCGCCATCGAGGAGGGCCGGAGCCCGGCCTCAATGGCGGCGCCCTGGTAGACAGCTCCTATCTTCTGCTGCTGGTCCGGGGGCCCGGCCTCACTTCAGGTGCCGGGCGAAGAACCGGTTCACCTCGTCCCCCTCGAACTGCGGGACGCCGGTGTGCCCGCCCGTGTTGGCGTGCAACGTCTTCTCCTCGGAGCCGAAGGCGTCGAACAGGTCCAGGGCCAACTGCCGGTCGTTTCCTTCGTCGTCCCACTGAAGCAGGACCAGCAGCGGAATGGCGACCTGCCGGGCCTCCTCGAACATGGTGCGGGGCACGAAACTCCCGGCGAACAGGAGGGCGGCCGAGATACGTGGCTCGACCACCGCCAGCCGAAGACCGATGGCGATCACTCCTCCTGCGTAACCGACCTGCCCGCCGATCTCGGGCAGCGGAAGGAGGGCGTTCAGGAGGGCCTGCCACTCCGGGACCGCCTTCTCGACCAGCGGGAGAACGAGTCGGTCGAC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 448421-447599 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIOJ010000003.1 Umezawaea beigongshangensis strain REN6 NODE_3_length_729970_cov_198.923979, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 448420 29 100.0 32 ............................. TCGCCGACCACGGCGACATCAAGGGCATCGAC 448359 29 100.0 32 ............................. GCCTCCATCTGCTCCCGCTCCGGAGACGGATC 448298 29 100.0 32 ............................. CCCACCACCCAGAGCCCCGAGGCGACCACCGA 448237 29 96.6 32 ............................G ACGATGCCAGCGATGTCGAGTGTTTCGTTCTG 448176 29 100.0 32 ............................. ACCACCACCCTGATCGCCCTGACCGTGATCGC 448115 29 100.0 32 ............................. ACGTGGGCGACGTCGTTCTCGATGCGCCCGGT 448054 29 96.6 32 ............................G GCGGCCCGGCGCGAGATCGACGTCGAGACCGA 447993 29 96.6 32 ............................G CCTCTGCGGGGGTTGCCTCCCCCTGGACCACG 447932 29 100.0 32 ............................. TTGAACGTGAACCTCGCGTCGACCCAGCGGCC 447871 29 96.6 32 ............................G GTCCTGATGGAGATCATGACGCAGGGCCGAGC 447810 29 100.0 32 ............................. TCGATGCGCTCGGTGGCCGGGCGCGGGTCGGG 447749 29 96.6 32 ..............T.............. TACATCGGCGATGCCGACGACATCGCGGAGAC 447688 29 89.7 32 .................C........T.G AGCCCGGCCGTGTCGCTCGTGCCGGAGCCAGG 447627 29 93.1 0 ....C...................C.... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.6 32 GTCTTCCCCGCGTACGCGGGGGTGTTCCC # Left flank : TCGCGCGCACCTGCACGGACGTCCGCGAACACGGCCGAACACACCAGGACTGAGACGACGACTGAGACTGATTGCGGACGACCCACCGGCCCGACGCCCTGATCCCTTGCCCACACTCCACATCTAGACCAATGTCCGACCAAATCGCCCTGCGCTGCGACCAGCCACGCCGGTACCCCTCCCCAAAGCGTCCCATCCGTCCCAAGCGTCCCAGTGCAGGTCAACCCTGGGACGCTTTGAACGAGCGGGACGCTTCATCCGTCCCATGGGACGCTTCAAGCGTCCCGGCGAATCAAAGCGTCCCAGGGCTGACCTGCGACGGGACGCTTGGGACGCTTGGGACGCTTCGCCCCCAGGAAACGACTAGAGCAGCCGCCACTACCTCCGCAACCGCAGACCAATCCTTCTCAAGCCACTGCGGCAGCCTCACGGCTATGCTCCACCCGTACAAACCCATGCTGAAAGCCCACCACTCGACACAAAGCACCAGGTCAAGAAGT # Right flank : GCCACTCGGGCCACGATGCCGTTGAGTGGCGAGGCTCCCCGGTACGCGGAGTGCTTCAACTAGCACGTGGGTCAACGGTCTCGCAGGAGCTGATCCCTGAACTCCCAAGCACGCGACAGGATGCAGGCTCCAGGGGACGCCATTGGTTCCGAAGTAAGCATCCTTTGCACGGTTTCCTCCGTGAAGGGAACACCGTCCGACACCGCCGTTGATTCGATAGCCGACACGAGCGAACCCTCAGCATTTATCTTCACGGTGTCGCCAAAAAGTTCATCAAAGACGTGGTCGTCGATCACGACCACAGTTAGCAGCGTGGCCGTCAAAGTTAGGGTGTCTAACCCCAACCCTAGACAGTAGGCGTTTACAGTGCCTTCACTGCGACTTTGCTGAAGCGACCGATAGAGCGACCAGTTGTCGTAGTCAATCGGCTGCCCTTGACTTCCATCGCGCTCCGGCTCCCCCAATAGCTCTTCCGAGTACTCGCGCACCATGTTCCGCCA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGTACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5998-4688 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIOJ010000014.1 Umezawaea beigongshangensis strain REN6 NODE_14_length_126557_cov_122.442916, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5997 29 96.6 32 ............................G TCCGCACGAGACTGGCGCACCCCCGCGGTGGG 5936 29 100.0 32 ............................. GCCGTGGTCGAGGTCGACGAGGTCGAGATCGT 5875 29 100.0 32 ............................. CCCGCACCTCCGCCGCCCAGGGCGTCGGTGTC 5814 29 100.0 32 ............................. CGACTGCCGGGCTGGCCGGGGACGCTCCCCTC 5753 29 96.6 32 ............................G CGGTCCGGACCGAGCAGCTGCGCCGCGCCACC 5692 29 96.6 32 ............................T TCGTCTGCGCCAACACGGCCGACGTGGACGAG 5631 29 100.0 32 ............................. CGGCCGTGTCCGGCGTGTGGACCGGATCCGTG 5570 29 100.0 32 ............................. ACCGGCGACACGACGCCGGACACCGCGCCCGT 5509 29 100.0 32 ............................. GACAACCTCAACCTCCGCATCGCCGAAAACTC 5448 29 100.0 32 ............................. CTACAGGGTTCGGCGGAGAGATCGGAGAGCAC 5387 29 96.6 32 ............................T TGCGCCTCGATCCGGGCGCGGTCGGTGGGCTT 5326 29 100.0 32 ............................. TCGCGCAGCGACAGCCGCGGGAACGCGTCGTC 5265 29 96.6 32 ............................T GCGGATCAGCAGCGCGTCGGGCACGAGCTCGT 5204 29 100.0 32 ............................. GGCCGTTTCGGTCAGCCCGAGAGGTAGGTCCA 5143 29 100.0 32 ............................. CGGGCGACCGCGTGCGCCTCGTGCTGCACGTG 5082 29 96.6 32 ............................A CTGGTCTGCGTCGGCACCCAGTCACCTCCTGT 5021 29 96.6 32 ............................G TCCGGGTGCCCGCCCCCGGTCACCGGCAGGGC 4960 29 96.6 32 ............................G TGCCTCGTCCGGCTCCCCCACGCCCCCAGCTC 4899 29 96.6 32 ............................G CCCGTGTAGACGTGGACGGAGACGCCGTCGCG 4838 29 96.6 32 ............................G ACCACACGAGACTGGCGCACCCCCGCGGTGGG 4777 29 100.0 32 ............................. TGCTCGACACCATGGTGGAGCTCAGCTCGACG 4716 29 93.1 0 ......................GT..... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.1 32 CTCGTCCCCGCGCACGCGGGGGTCTTCCC # Left flank : CCAGCGAACTGTGGGACGACGAACTCGGCGCCGTGTCCAGCGGTGTCAACTGGGCCTCCGACCCCGACACGCCACCCGGCGAGCATCTGCTGATCATCGGCCCCGAGTTCGACGACACCCAACCCGCGAAGGTGGAGTTTTGACCGTCGTCGTCCTCATCGCCGCACCCGAAGGGCTCCGCGGCCACCTCACCCGCTGGATGGTCGAAGTCTCCGCCGGCGTCTTCGTCGGCACACCCAGCCGCCGCGTCCGCGACCGACTCTGGGAACTGCTCTCCGAACGCATCCGAGACGGCCAAGCCGTCATGACCGAACCAGCCGACAACGAACAGGGCTGGACCGTCCGCACCGCCGGGCACGACCGCTGGTACCCCGTGGACTACGACGGCCTCGTCCTGTCCGCCCGACTCCGCCGACCAAGACCTAACAGCCGCCAAGAAGCCCTCAAACGCAGTGAATCAGAAACACTGTGACCATTCACAAAACCGCAGATCAGTAAGC # Right flank : CTGGAGAACACGTCTGATAACCCCGAGCCGATCTCGTCACCGCGCGGGGGTCTTCCAGCAGATTCTCCCTGTACACGCGGGGCTTCCCGCGTTCGCGCTGAAGTGGCCCGGTCGGACGGTGGATGTACGACTGCGGTTTGCTTCCTGGGCAGTGGTTCTCGGCAGGGAAGGAGGAGCGGATGAGGAGGCGTCGGTCTGCCAGAGATGACGTGAACATGCGTCAAGTGACGTCAACTGTGCCGAGGCAGCTCATAAAGAGGACGTTTCCGCAGGTCAGGACATGTTTTAGACGTGTCTGGGGGTCAAGGGGTCACAGGTTCGAATCCTGTCGTCCCGACGGTCTGAATCAGCCCTGCTGAGCAAGGTGTAACGCCTGGTAAACAAGGCTTTTTCGTGTCCGGTGGTCGATCTGGGGCATGATCTACATGAGGCACAGTTGTGGACCACTTGTGGGCCGTTGCAGGTGTTTCGACAGCAGATTACCCGCGTCGGTGACCGAT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCGCACGCGGGGGTCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16372-17804 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIOJ010000014.1 Umezawaea beigongshangensis strain REN6 NODE_14_length_126557_cov_122.442916, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16372 29 100.0 32 ............................. CGTGTGGACCCTGAGGAGGCCCGTGCGCGTTC 16433 29 96.6 32 ............................G TCGAGGAACGCCTGGTGTACCTGCAGGCGCGG 16494 29 96.6 32 ............................G TCGCCGCCGATGCCCTCACGGGCCCGGTCGGC 16555 29 100.0 32 ............................. GAGCTCACCGCGGCCAGACGCCGCGCCCTCGT 16616 29 96.6 32 ............................G CTCATCGGGTCCCCCGCGGCTGGGTGGGGACG 16677 29 100.0 32 ............................. CCGAGCGTCACGCCCGCGGTGAACTCGCGGCT 16738 29 96.6 32 ............................G GGGTGAGGCGGGATGGCCGCGTCGTTCGCCAC 16799 29 96.6 32 ............................G ATGCGATCCATGATCTCGTCGCGATGCATCTC 16860 29 100.0 32 ............................. CGCGCGCTGGGCGTCGGCGAGCGGGTGTGGGT 16921 29 100.0 32 ............................. GTAGAGAGGAGGTGACCGACTGTGGCCGTGAT 16982 29 100.0 32 ............................. CGCGTCACGCACCACGCACGGCCCAGGGGCCC 17043 29 100.0 32 ............................. GGGACGAGCACCCCCTCCGCGTGGGAGGGGCT 17104 29 100.0 32 ............................. CTCGGGTGGACCGTGGCCGGTCGGCTGGTCGA 17165 29 100.0 32 ............................. TGGGCGTGCTGGGCTGCGAGCGCCGCGTCGGT 17226 29 100.0 32 ............................. GTGGTGGCCCCGGTGCCGCCTGTGAACTCGGC 17287 29 100.0 32 ............................. GTCGCCTGGATGTCCGTCCAGCCCTTGACGTG 17348 29 96.6 32 ............................G TGTCGCAGTACGAGATGGGAAACACCGATCGA 17409 29 96.6 32 ............................T ATGCTGGTCAGGGTGCTTGGCTGCACCCCGTA 17470 29 100.0 33 ............................. GATGGGGTCGGTGCTGGTTTCGGGGGTTGCCTC 17532 29 96.6 32 ............................A CGGGCGAGTTCCCCACCCTCGGCTACGCGGTC 17593 29 100.0 32 ............................. TGCTCGCGCTACCCGACGTCGCCCACGTCGAT 17654 29 100.0 32 ............................. GCCGCCCGGATCGACAGCTGCTGCTGCCGGTG 17715 29 96.6 32 ............................G CGAGTGCCGCCGTCGTAGGAGCCAGCGCTGGA 17776 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.6 32 CTCGTCCCCGCGTACGCGGGGGTCTTCCC # Left flank : AGACGATAAGCTGACATTAGATGGACTAAAGGCATGACTGCGAGCAACGTCGGGCCATGCACATCGCTACCCTAAAGCCGTTCACCAGCGAAGACGCCGCATGAGACAACAGGGCCATGTCACTTGCGGCGCGAACGTCGGACGGCGATGACGTCACTGCCGGTCACCCCGGCGCGACCAGAAAGACTCAGATTGTCAAGGACAAGCCAAAATCTCAGCATTACGCGGTCGTGCTCGCCCCCGAAGATCCCCCACCTGCACGAGATCGAACTCGACAGGCTTGCTCATGATCTCACCGCGCTCGGAAGATCCCCACGAGCGCGGAGTCGAGCAAGGATGGACCGTCCGTACGCCAGCCACAACTGCTGGCACCCGTGGACCACAATGGCCGCGTCCTGTCCTCCCGCCTCCACCGATCATGCCCCCACCCCCACCAGGAAGCCCTGAAACACAGTGAATCAAAAACACTGTGAACATTCAGAAACCGCAGCTCAGCGAGC # Right flank : ACGGCCTCCGGCGCTGTGGGGTGCCAGAACTCTGCACTGGCATGTTGAGCTGCGACGATCGCGCATGCTGGACCTCCAGGGCATGATCGTGAGGTGTGGCGTTACGACTGCTGTACCTGATCTTCGTCCGGCTCGGTGACTGGTTGGTTCTGCTCGGCCGGTCCTCCGCGGCCAAGAACGTCGAGCTGCTGGTACTGCGGCATGAGATCGCCGTGCTGCGACGAACCAACCCAGGTCCGCGGCTGGAGTGGGCCGATCGTGCGGTGCTCGCCGCGTTGGTTCGCCGATTCCCCCGACGGCTGCGCGAGCACCGGTTGGTGACACCGGGCACCATCCTGCGATGGCATCGACGCCTGGTCGCGAGGAAGTGGACCTCCCCGAACCGCACCGGCCGACCGCCGGTCGACGACATCGTCGTGGCGTTGATCGAACGAATGGCACGGGAGAACACCGGCTGGGGCTACCGCAGGATCCAGGGCGAACTGCTCAAGCTCGGCCAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCGTACGCGGGGGTCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 490356-489107 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIOJ010000004.1 Umezawaea beigongshangensis strain REN6 NODE_4_length_582904_cov_189.934349, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 490355 29 100.0 33 ............................. AGCGCGTCAGGCGTACCGATCTGGCGTCAGGTC 490293 29 100.0 31 ............................. GCTTCGCCGCGGTCGTGGTGGTAGACCGCGA 490233 29 96.6 32 ............................G TCGTCCGATGGTGACGACGAGGCGGGCACGCC 490172 29 100.0 32 ............................. ATCGTCACCAGCATCGTGAAGTGGATGCGGGC 490111 29 96.6 32 ............................G GCGCCGAACCTGGCACGACGAACGTCCTCGTC 490050 29 96.6 32 ............................G GCGTCGAGGCCCTGGCAGATCGAGTGCAGCAG 489989 29 96.6 32 ............................G GCGAGCCGTTCGAGCTGATCGACTGGCAGGCC 489928 29 100.0 32 ............................. GCACCCACCACCAGCCCCAGCAGGTCAGCGCC 489867 29 100.0 32 ............................. TGCCACTCCCACTTGCGTGGAGCGAGCATCCG 489806 29 96.6 32 ............................G GCGGGGCCGGTGAGGTTGGCCCAGTGCAGGTC 489745 29 100.0 32 ............................. GCCAGCGTGCGCGTGCCCGCGGCGCCCAGCGG 489684 29 100.0 32 ............................. GGGGCGAACGGATTCCTGACGGAGTGGCTGGA 489623 29 100.0 32 ............................. TTGAAGCTGGTGCGACAGAAGGACCGGACGAA 489562 29 96.6 32 ............................A TCGCCAAGCGTCTCACCTCGCGCGAAGAGCTC 489501 29 96.6 32 ................T............ GCGGCGGCGAGGATGAGGCGGGTCTGCTCGGT 489440 29 93.1 32 ....................A.......G TCCGAGGCCACTCTCGACGGGGACGAGACGTG 489379 29 96.6 32 ............................G TCGAAGATTCTTCGGAGCGTCCCTTGCACGAT 489318 29 96.6 32 ......T...................... GCGTTGATGTCCTCCTGCTGGTCCTCGATGTA 489257 29 100.0 32 ............................. ACCGTCACGATCGTGGGCAACGTCCCGGCCAA 489196 29 100.0 32 ............................. GCGCACTGGGCAGGTGTCGAGTCCGCAGGTTG 489135 29 69.0 0 .....T..............A.CCCGTGG | ========== ====== ====== ====== ============================= ================================= ================== 21 29 96.7 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : CCCGAGGCCTTCGAGGACCCCGACGTCGTGATGCTGTGGGACTACAAGGGCCCAGCCGTCGCGGGCGGCACGGCGTACGGAGACGACGAATGACCGTCATCGTGGTCGCCGCCTGCCCGGTCGGCCTGCGCGGTCACCTGACCAGGTGGCTGCTGGAGATCTCCCCCGGCGTGTTCGTGGGAAAGGTCAGCGCGAGGGTCCGCGGTCTGATGTGGGTCCGCGTGGTGGACATGGTCAAGTCCGGTAGAGCGATCATGGTCCACAACGCGGACAACGAGCAGGGACTCGCGTTCGAGGTCCACGACCACAACTGGGTGCCGACGGACTTCGAGGGCATCAGCCTCGTGCTCCGCCCCGCTTCGGCGGACGAGGCAACCACGACAGCGCCTCCGTCGAAGGGCTGGAGCAGTGCGAGCAAGCGACGCCGCTTCGGTCGCCGCTGACCGTCCAAACCCATGCTGAATCGCCGGTAAGCTCCGCAAAGCAGCAGGTCAATTAGC # Right flank : GGCGACATCAGCAGCCGCCCCGCCCAAGGCACCCGCGAGCGGGAACCCCACCGGAGGGACGCGACCTCTCGGGTCAGGCCAGGACCGTCGTCACGAGCGCCCAGTGCGGCAGGCCGCCTGCCAGGACTCCCACCGCCGCGCCCACCCACACCTGTGCGGTCGTGTGGTCGCGCAGTTCCACCCTGGACCAGCAGACCAGGACCACCGCCGGGGTGAGCAGGGCCAGCAGGGGGCCGTAGGCGGCCACCAGCATCACCACCGCGCCCGACGCCACGGCGGCGTGCATCGAGACCTTCCAGTGCAGGCCGAACGTGATCGTCACGCTCACGACCAGGGTCACGAACATCGCCACGGCCAGCGCGGTCATCTCGCCCGGCGCTCCGCCCAGCACCAGGATCGCGATGCCCACCGCCAGGGACGACGTGCAGACCGCGAAGGGGATCACCCTGCCCTCGCGGTTCGTGACGTGGTGACCCTCCCACGCACCGCGGCGCGCTCCC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 500451-499568 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIOJ010000004.1 Umezawaea beigongshangensis strain REN6 NODE_4_length_582904_cov_189.934349, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 500450 29 100.0 32 ............................. ATCTGGAGTCGCCGATACTGTTCTTGCAGGTC 500389 29 100.0 32 ............................. GCAGGCAGCAGCGGGTTACCGAGGATGTTCTC 500328 29 100.0 32 ............................. ACCGTCGAACGGCTGAGCCGGAGCGGGAAGAA 500267 29 96.6 32 ............................G TCGGGGGCGGCGTTGGTGAGCAGGAAGTCGCC 500206 29 100.0 32 ............................. GTCGTGATCGGCTTTTTCGATCCCGAGCGCAC 500145 29 96.6 32 ............................G TTCGGGTGGGCGGTCGACCACATCGACGAGAT 500084 29 100.0 32 ............................. AGGTACGACGCGAACGCGCCGACGCCGATGGC 500023 29 96.6 32 ............................G GTCGGCCGCGGCAAGACGCACCAGGCGTACGG 499962 29 96.6 32 ............................G TCGTCGCTGGTCGACGCCTTGGCCTACCGGGC 499901 29 100.0 32 ............................. GGGGCTCTCTGGTTGGCGGTCGTCCGTGACGA 499840 29 96.6 32 ............................G CCCTGCCGGACCTTCACCAGCGGCGCCCCGGC 499779 29 100.0 32 ............................. CACTGGCAGGTGGGCGAGCCGTGACCGGCGGC 499718 29 100.0 32 ............................. GCGAGGCGATCCACGTCTGTTCGTTCCGCCCA 499657 29 100.0 32 ............................. CGGTCGGCCGCGGCGACGTCCGGACCGAACGC 499596 29 93.1 0 .........A..................G | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.4 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : GGACGTGCAGGGCCGTTCTGCGTCGTGTGAAGCTGACGAGGCCACCCGAGACTGGTTAGCTGACGCGTGTGGACGAGGTACTGCACGAGAAGATCCGCGACACCGTGAAGGCCGTCCCGCGCGGACGCGTGGCGACCTACGGCGACATAGCCGACATCGCGAGAGCCCCCTCGGCGAGACTGGTCGGCACCGTGCTCAACCAGGACGGCCACGACCTCCCGTGGCAGCGCATCCTGAAGGCCAACGGCACGTTCGCCCCGCACATCGCCGACGAGCAGGCCCAGTTGCTGCGCGGCGAGGGAGTGACGGTGGTGGACGGCAAGGTCGACCTGCGCGTCTACCGCTGGGAGGACGCCGTGAAGGAAGCCCCACCGGAGGAACCCGGCCTGTGGTGACGGCGGTCGCGGTTCACCCGCGCAGGCGCCAGAGCGGTGCTGCCGAGCGGCGTCAAACCCATGCTGAATCGTTGGTAGGCTACGCAAAACGCCAGGTCAGTTAGT # Right flank : GCCTCACCGCCGCAGCGAGGTTCACGGCCAGAGTCTTTCCCGTGAACACCACGTCGTCGAGTGCCCGCTTGGTGGTGGTGCGGGGTCAATCACCTCGGCCTCGGGTCGCACAAATGCGGTAACGAGCGATCGACGCTGGTCCGTTCGAGCGAACATCGGACGTCAGGAGTAACAGGCACCTCCTGGCGGACTATTCCTTTCGCATGTGGACGCAACAGCGTTCGAACGATGGGGAACACCACGGATGCTTGACCGAGTTGGACTGTTGTCGGTGTGGGCGAAGTCTGCCCGTGACGAGCAGGGGAACATCACCGATTGGCTTCCACTGCACCAGCACCTCGACGATTCTGGCGCGGTGGCCGATTTCCTGGTCGAGCACTGGTTGTCCCCTCAGGTGCTGCACCGGATAGCTCGCGATCTCCCGGACGGTCTTGACGGTGTTCGTGTTCTCGCGCATTGGCTGGCCTCCGTTCACGACGTCGGCAAAGCGAGCCCGGCCT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 134084-132774 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIOJ010000005.1 Umezawaea beigongshangensis strain REN6 NODE_5_length_398228_cov_194.049765, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 134083 29 96.6 32 ............................G CGGATGCAGAACGATCCGTTGATCGACCCCCG 134022 29 100.0 32 ............................. CCGGAGCCCGACCTCGGCGACGTCGACCTGGA 133961 29 100.0 32 ............................. TCCTGGACGCCGAGCGCGCCGCCGCCATCGAG 133900 29 96.6 32 ............................G TCCTCGACGGCCACCCGGCTGTCGTTCGTCCC 133839 29 100.0 32 ............................. GCGTCGACGACGCCCTGCGCGCCCGCCGTGTT 133778 29 100.0 32 ............................. GTCGGGTGCGCGGTCAACAGCGACTGGAACGT 133717 29 100.0 32 ............................. GCACCGATCACCGGCACGGTCTGTCGGCCGGG 133656 29 100.0 32 ............................. AGCGCGAGCGGCCTGTGGTCGATGCTGTCCCG 133595 29 96.6 32 ............................G CGCACGCGTGCCTGGTGGAGCTGATGCCGACG 133534 29 100.0 32 ............................. CTTGTCGGTGCCCGCGCTGTTGGTGACCCGGA 133473 29 100.0 32 ............................. CGGTCGCGGGCGTTCTTGCTGAACTCGTCGTT 133412 29 93.1 32 G...........................A TTGGTGATCAGGTCGACCTCGCCGCGCAGCAG 133351 29 93.1 32 G...........................G GTGTTGTCCGTCTGGGTCTCGTTGGTCGCGGC 133290 29 86.2 32 GGTC......................... CAGGCGGCGTCAGCGACCAGGAGGCGCAGCCG 133229 29 96.6 32 G............................ CGGAGCGCGTCGCCCAGGGAGCCAGCAACCGT 133168 29 96.6 32 G............................ TTGTTCTGCCACGCCATCTCGGTGGTCTGCTT 133107 29 96.6 32 G............................ ACCAGCGCGCGGCCCTGGTCGACGTGCTCGAT 133046 29 96.6 32 G............................ ATGTCCGCCGAGTACCAGTCGCCGACGGTGTC 132985 29 93.1 32 G..................A......... CCGACGCTGTGCCCGACTATCGAGATCGGCTT 132924 29 89.7 32 G.......T...................G TGGGAGGCGGGTGGGGAGAACATCCATCCGCG 132863 29 93.1 32 G........................A... CGGCCCGTCGCCGTGGTGTGGTGGGTCGGAAC 132802 29 79.3 0 G..........A.A.........CA..G. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 95.6 32 ATCTTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : TGCTGACGAAGGCAGCTGTGGCGTCTTCCCCACGCGAGCGGGGGCTCCCCGGCCTGTCAACATGATCATCGTCTAGTCAGCAGCACCGCTCCAGCCCGCCTCCCCCACCAGCCGCAAGCAGACCAATCTCCGCATGAGCGGCCCTGTCCTTCTGGGATCGGTAACTGCGGTAACTGCGGTAACCGTGCAGGTCAGGCGGTTACCGCAGCGGTAACCGGTTACCGCAAGCCGGGTTACCGGTAACCGCGCCATCGGTAACCGCAACCAGATCGGTAACCCTCCGACCTGCGAGGTTACCGCAGTTACCGCAGTTACCGATCCCAGAGAAGGACGCCCTCGAAGAGGGCCAAGGATGAACCAATCCCTGCATGAGGACGCCAGACTCCGCAACTGCAGGCCAACCCTTCTAGAGCCACTACAGCAGCCCCACGGTTACACTCCACCCCGCAAAACCCATGCTGAAAGCCCGCTGCCCGACACAAAGCACCAGGTCAAGAAGT # Right flank : CAAATTACTATAGTCTTATCGTCATGACGTTTTGCCCGAGGCAGGAGTACGCCATTCCTATCTTCTGTCTCCTCCCAGTCATGCAGCCGTTGAAGAAACCCGTCCAAGTCTCCCTTGGGCAAATTGGCAACCCTTTCCCAACCGATTTCAAGGTGGTCTACAATTCTTTGCGCACCGTCAGTCGCAAGCACGCACCATTCAATCAGATTACACGGAAATTGACGACTTACGGCTTCACCCGCCGCTCGCGGTTCAGACTCAGCAATCCAATAACCATTCGGCACGTTCCTGTATTGAACTTCCACTTCTTGCAGCTTACTCATTAGAAACTTATGCTCCTCGTCATAGCCGCTACCGCTCTGCAACCGCTCGCGATAGGTACGACGCATGTCATGGGCCACCCCACCTAGGCGCGCGTCTGTCACCCGGTGAATTTCACCCTTTTTGGTGGCGATCAGCGCAGTGCTGTCCCCTAACGCCAGCACTTCCAAAACACTGGC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 135415-134533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIOJ010000005.1 Umezawaea beigongshangensis strain REN6 NODE_5_length_398228_cov_194.049765, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 135414 29 100.0 32 ............................. CTCTACTACTCCGCGGCCTATCCGTTCCGGTG 135353 29 96.6 32 ............................C CCGATCAACTTCGCGTTGCAGGACGAGACGGG 135292 29 100.0 33 ............................. TAGCCCGTCACCACCCGCCCGGACCGGCGGACC 135230 29 96.6 32 ............................C GAACCCCTGTAACGCTTGTTGTAAGACAAAGC 135169 29 100.0 32 ............................. TACGCCCGTCACGGCCTGTCCGTCGCGGACGT 135108 29 96.6 32 ............................C CTCGTTTCAAGGTTCGCCCAACTCGTCGAGGA 135047 29 100.0 32 ............................. TTCCGGATGATCTCCGGAGCGCTGCACTACTT 134986 29 96.6 32 ............................C GCGATCGTGTCCGACCGGCGGCCCTTGTGGAC 134925 29 96.6 32 ........................A.... GCGTCACGGGTGGCCGGGATGAGGTTCTGGTG 134864 29 93.1 32 ................T...........T AGTTCGCAGCCACACTATGCGCATGACCACGT 134803 29 96.6 32 ............................T CTCCTGCTGATAGGTGGGTGGTGGAACCAGGT 134742 29 96.6 32 ............................C CTCACCGTCAACGGGACGCTCGGCGGCTCGGG 134681 29 100.0 32 ............................. TCCTCCTGGGCCTTGCGCATCAGCAGGCCGAT G [134659] 134619 29 86.2 26 .........A..............AAG.. GCGCTGCTGACGAAGGCAGCTGTGGC GCC [134594] 134561 29 82.8 0 .........A............CTCC... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 95.9 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : CTGGGACGCGATCGAGTCTTCCCCGCGCGAGCGGGGGTGGTCCGCGCCAGCCCGAGAAGACCGCCGACCTCGCCGAGTCTTCCCCGCTCCAGCCTGCACTCGCCCGCCAACCGCGAGCAGACCAATCACCGTATGAGCCGGGGCGGGCCACCCTGCCCTTCTGGGATCGGTAACTGCGGTAACCGCGCAGGTCAGACGGTTACCGCAGCGGTAACCGGTTACCGCAAGCCGGGTTACCGGTAACCGCGCCATCGGTAACCGCAACCAGATCGGTAACCCTCTGACCTGCAAGGTTACCGCAGTTACCGCAGTTACCGATCCCAGAGAAGGACGCCCCCACCCGCGACCGACGATGAACCAATCCCTGCGTGAAGACGCCAGCCTCTGCAACTGCCGGCCAACCCTTCTGGAGCTACTGCGGCAGCCCCACGGTTACACTTCACCTCGCACAAACCCATGCTAAAACCCGCTGATCGACATAAAGGACCAGGTCAAGAAGT # Right flank : GCCTGTCAACATGATCATCGTCTAGTCAGCAGCACCGCTCCAGCCCGCCTCCCCCACCAGCCGCAAGCAGACCAATCTCCGCATGAGCGGCCCTGTCCTTCTGGGATCGGTAACTGCGGTAACTGCGGTAACCGTGCAGGTCAGGCGGTTACCGCAGCGGTAACCGGTTACCGCAAGCCGGGTTACCGGTAACCGCGCCATCGGTAACCGCAACCAGATCGGTAACCCTCCGACCTGCGAGGTTACCGCAGTTACCGCAGTTACCGATCCCAGAGAAGGACGCCCTCGAAGAGGGCCAAGGATGAACCAATCCCTGCATGAGGACGCCAGACTCCGCAACTGCAGGCCAACCCTTCTAGAGCCACTACAGCAGCCCCACGGTTACACTCCACCCCGCAAAACCCATGCTGAAAGCCCGCTGCCCGACACAAAGCACCAGGTCAAGAAGTATCTTCCCCGCGCGAGCGGGGGTGGTCCGCGGATGCAGAACGATCCGTTGA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 136572-135809 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIOJ010000005.1 Umezawaea beigongshangensis strain REN6 NODE_5_length_398228_cov_194.049765, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 136571 29 100.0 32 ............................. GCCCAGGCCAGCACCTCCTCGCGGGAGACCTT 136510 29 100.0 32 ............................. GCGACTCCTCGACAAGCCCGGTGTTGAGAAGA 136449 29 96.6 32 ............................G CGGGCAGCATCGGCGCGGTTCTGCGCTTGGAC 136388 29 100.0 32 ............................. TCGCGCTCGGCGGCGTCCTGGTCGACGTCGAC 136327 29 96.6 33 ............................A CAGCCTGCACGCGCCGGTCTCGTGCCAGGTCGG 136265 29 100.0 32 ............................. AACCCGCTCGCTCGCGACCTGCGGCCAGCGCT 136204 29 96.6 32 ............................G TCGAAGATGCTGACGTTCCAGCAGATCGGCGC 136143 29 96.6 32 .....................A....... AGGAGATCGGCGGCGAGACGGTCCTCACCATG 136082 29 100.0 32 ............................. CGCGGCCCCGCACCCCTGCCGACGCTCTACGG 136021 29 100.0 32 ............................. GGCGGTGCGGGGGTAAACCAGGCGGGCGGTGC 135960 29 100.0 32 ............................. ACGTCAGCGGCTGAACTCTGGGACGCGATCGA 135899 29 96.6 32 ............................G CGCCAGCCCGAGAAGACCGCCGACCTCGCCGA 135838 29 69.0 0 ...........T.C...CT.CA.C.C..G | C [135816] ========== ====== ====== ====== ============================= ================================= ================== 13 29 96.3 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : ACGTTCGTCAGCGGAACCCGCGCGAGCGGCACTCGCCGTCTCAGCGGAGCGGCGTTCGAGCGGCAGCAGCACTGCTCCAGCTCGCACTCCCCCACCAGCCGTGAGTAGACCAATCACCGTATGAGCCGGGGCGGGGCGCCCTGTCCTTCTGGGATCGGTAACTGCGGTAACTGCGGTAACCGCGCAGGTCAGACGGTTACCGCAGCGGTAACCGGTTACCGCAAGCCGGGTTACCGGTAACCGCACCATCGGTAACCGCAACCAGATCGGTAACCCTCCGACCTGCAAGGTTACCGCAGTTACCGCAGTTACCGATCCCAGAGAAGGACGCCCTCGAAGGGGGCCAAGGATGAACCAATCCCTGCATGAGGACGTCAGACTCCGCAACTGCAGGCCAACCCTTCTAGAGCCACTACAGCAGCCCCACGGGGTTACACTGCACCCCGCACAAACCCATGCTGAAAGCCCGCTGCCCGACACAAAGCACCAGGTCAAGAAGT # Right flank : CCAACCGCGAGCAGACCAATCACCGTATGAGCCGGGGCGGGCCACCCTGCCCTTCTGGGATCGGTAACTGCGGTAACCGCGCAGGTCAGACGGTTACCGCAGCGGTAACCGGTTACCGCAAGCCGGGTTACCGGTAACCGCGCCATCGGTAACCGCAACCAGATCGGTAACCCTCTGACCTGCAAGGTTACCGCAGTTACCGCAGTTACCGATCCCAGAGAAGGACGCCCCCACCCGCGACCGACGATGAACCAATCCCTGCGTGAAGACGCCAGCCTCTGCAACTGCCGGCCAACCCTTCTGGAGCTACTGCGGCAGCCCCACGGTTACACTTCACCTCGCACAAACCCATGCTAAAACCCGCTGATCGACATAAAGGACCAGGTCAAGAAGTGTCTTCCCCGCGCGAGCGGGGGTGGTCCGCTCTACTACTCCGCGGCCTATCCGTTCCGGTGGTCTTCCCCGCGCGAGCGGGGGTGGTCCCCCGATCAACTTCGCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //